Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46892 * 111.00127 * 2 1 4 4 H 1.09005 * 109.47480 * 32.11684 * 3 2 1 5 5 C 1.50702 * 109.47658 * 152.11796 * 3 2 1 6 6 H 1.08002 * 120.00440 * 119.99198 * 5 3 2 7 7 C 1.37888 * 119.99746 * 300.00523 * 5 3 2 8 8 N 1.31510 * 119.99486 * 359.71586 * 7 5 3 9 9 Si 1.86792 * 119.99922 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47142 * 179.71919 * 9 7 5 11 11 H 1.48499 * 109.47394 * 299.72174 * 9 7 5 12 12 H 1.48507 * 109.47174 * 59.72488 * 9 7 5 13 13 C 1.50708 * 109.47212 * 272.11749 * 3 2 1 14 14 C 1.38224 * 119.98443 * 333.91474 * 13 3 2 15 15 C 1.38187 * 120.04770 * 179.76443 * 14 13 3 16 16 C 1.38496 * 120.02700 * 0.51536 * 15 14 13 17 17 F 1.35098 * 120.01330 * 179.76803 * 16 15 14 18 18 C 1.38398 * 119.97127 * 359.74036 * 16 15 14 19 19 C 1.38438 * 119.94928 * 0.02562 * 18 16 15 20 20 F 1.35108 * 120.01095 * 180.02562 * 19 18 16 21 21 H 1.09002 * 109.47140 * 304.86488 * 1 2 3 22 22 H 1.09003 * 109.47549 * 64.86576 * 1 2 3 23 23 H 1.08999 * 109.47144 * 184.86936 * 1 2 3 24 24 H 1.00898 * 111.00208 * 123.95620 * 2 1 3 25 25 H 0.97001 * 120.00688 * 0.27811 * 8 7 5 26 26 H 1.07997 * 119.97685 * 0.02562 * 14 13 3 27 27 H 1.08004 * 119.98721 * 180.25195 * 15 14 13 28 28 H 1.07998 * 120.02341 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 1 1.3130 2.0226 0.5464 5 6 3.3479 1.3904 0.6644 6 1 4.2156 1.7223 0.1136 7 6 3.4776 0.9837 1.9756 8 7 2.4202 0.5846 2.6478 9 14 5.1541 1.0066 2.7990 10 1 5.0239 0.5324 4.2002 11 1 6.0816 0.1140 2.0585 12 1 5.6897 2.3917 2.7930 13 6 2.1264 1.8592 -1.4199 14 6 2.3019 0.9525 -2.4484 15 6 2.4173 1.3981 -3.7514 16 6 2.3680 2.7544 -4.0270 17 9 2.4855 3.1900 -5.3004 18 6 2.1976 3.6634 -2.9973 19 6 2.0772 3.2156 -1.6929 20 9 1.9103 4.1018 -0.6869 21 1 -0.3633 0.5875 0.8432 22 1 -0.3634 0.4365 -0.9304 23 1 -0.3633 -1.0239 0.0872 24 1 1.8305 -0.5261 0.7813 25 1 1.5496 0.5724 2.2202 26 1 2.3446 -0.1051 -2.2340 27 1 2.5504 0.6885 -4.5547 28 1 2.1586 4.7213 -3.2113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259389814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = -67.976115 kcal Electronic energy + Delta-G solvation = -15611.268883 eV Core-core repulsion = 12683.998306 eV Total energy + Delta-G solvation = -2927.270577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.65734 -48.31814 -38.54802 -35.86069 -32.03060 -30.54788 -30.21852 -26.63962 -23.88726 -23.05436 -22.32639 -20.36008 -17.78806 -17.48094 -16.63223 -15.55477 -15.41521 -15.01136 -14.72180 -14.13639 -13.97934 -13.84616 -13.60508 -13.26021 -12.82931 -12.23331 -12.02180 -11.54130 -11.25699 -11.14852 -10.88061 -10.72592 -10.28445 -10.13081 -9.05815 -8.77411 -8.54530 -7.89400 -7.49769 -6.55000 -4.35598 1.50183 1.54618 3.36723 3.37441 3.56583 3.93667 4.34676 4.39452 4.90701 4.97237 5.11765 5.25434 5.48678 5.70562 5.77290 6.01231 6.19910 6.22988 6.42510 6.44620 6.49624 6.64311 6.77194 7.01340 7.29569 7.65355 8.16411 8.20470 8.49809 8.62235 9.34055 10.76105 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.030065 B = 0.008954 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.085435 B = 3126.312094 C = 3423.471673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.697 5.697 3 C 0.231 3.769 4 H 0.014 0.986 5 C -0.589 4.589 6 H 0.057 0.943 7 C 0.026 3.974 8 N -0.909 5.909 9 Si 1.073 2.927 10 H -0.281 1.281 11 H -0.284 1.284 12 H -0.286 1.286 13 C -0.070 4.070 14 C -0.043 4.043 15 C -0.172 4.172 16 C 0.097 3.903 17 F -0.145 7.145 18 C -0.200 4.200 19 C 0.121 3.879 20 F -0.130 7.130 21 H 0.014 0.986 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.357 0.643 25 H 0.268 0.732 26 H 0.151 0.849 27 H 0.132 0.868 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.306 1.287 -8.739 8.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.332 5.332 3 C 0.124 3.876 4 H 0.031 0.969 5 C -0.628 4.628 6 H 0.076 0.924 7 C -0.178 4.178 8 N -0.547 5.547 9 Si 0.900 3.100 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.072 4.072 14 C -0.061 4.061 15 C -0.191 4.191 16 C 0.078 3.922 17 F -0.123 7.123 18 C -0.219 4.219 19 C 0.101 3.899 20 F -0.109 7.109 21 H 0.032 0.968 22 H 0.067 0.933 23 H 0.071 0.929 24 H 0.179 0.821 25 H 0.080 0.920 26 H 0.169 0.831 27 H 0.150 0.850 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.488 0.935 -7.991 8.060 hybrid contribution -1.045 0.986 -0.689 1.594 sum -1.533 1.921 -8.680 9.021 Atomic orbital electron populations 1.22150 0.90983 0.99928 0.99262 1.60716 1.04858 1.16610 1.51043 1.18168 0.96484 0.86340 0.86651 0.96872 1.21955 0.92920 1.48830 0.99070 0.92428 1.25982 1.05116 0.92546 0.94168 1.70905 0.99923 1.43998 1.39826 0.83466 0.73525 0.76766 0.76206 1.20596 1.21058 1.21216 1.20541 0.97120 0.90460 0.99110 1.20892 0.94455 1.01375 0.89411 1.21195 1.05938 0.93410 0.98563 1.17202 1.04325 0.92447 0.78236 1.91453 1.93809 1.90483 1.36604 1.20831 1.09280 1.00564 0.91261 1.17256 1.01896 0.87006 0.83762 1.91496 1.92566 1.67540 1.59257 0.96760 0.93289 0.92919 0.82062 0.92027 0.83142 0.84995 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.32 60.06 0.62 1.14 15 2 N -0.70 -15.49 5.04 -116.50 -0.59 -16.08 15 3 C 0.23 5.61 1.52 -70.02 -0.11 5.50 15 4 H 0.01 0.37 7.16 -51.93 -0.37 0.00 15 5 C -0.59 -15.79 8.66 -34.44 -0.30 -16.09 15 6 H 0.06 1.57 7.74 -52.49 -0.41 1.16 15 7 C 0.03 0.71 5.10 -17.82 -0.09 0.62 15 8 N -0.91 -25.57 12.91 55.43 0.72 -24.85 15 9 Si 1.07 24.08 29.90 -169.99 -5.08 18.99 15 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 15 11 H -0.28 -6.10 7.11 56.52 0.40 -5.69 15 12 H -0.29 -6.25 7.11 56.52 0.40 -5.85 15 13 C -0.07 -1.51 4.92 -104.55 -0.51 -2.02 15 14 C -0.04 -0.80 9.32 -39.61 -0.37 -1.17 15 15 C -0.17 -2.78 10.02 -39.51 -0.40 -3.18 15 16 C 0.10 1.61 7.30 -39.43 -0.29 1.32 15 17 F -0.14 -2.27 17.27 2.25 0.04 -2.23 15 18 C -0.20 -3.46 10.01 -39.45 -0.39 -3.86 15 19 C 0.12 2.46 7.24 -39.43 -0.29 2.17 15 20 F -0.13 -2.82 16.55 2.25 0.04 -2.78 15 21 H 0.01 0.28 7.81 -51.93 -0.41 -0.12 15 22 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 23 H 0.05 0.88 8.14 -51.93 -0.42 0.46 15 24 H 0.36 8.64 6.20 -39.29 -0.24 8.40 15 25 H 0.27 7.42 5.72 -40.82 -0.23 7.18 15 26 H 0.15 2.76 7.29 -52.49 -0.38 2.38 15 27 H 0.13 1.75 8.06 -52.48 -0.42 1.33 15 28 H 0.14 2.05 8.06 -52.49 -0.42 1.63 15 LS Contribution 251.71 15.07 3.79 3.79 Total: -1.00 -27.55 251.71 -5.74 -33.29 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -2.53 Total: 5.43 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: -2.12 Total: -15.56 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.13 Total: -40.93 kcal Atomic # 9 Polarization: -5.09 SS G_CDS: 0.08 Total: -5.02 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.08 Total: 18.99 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -27.55 -5.74 -33.29 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259389814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.687 kcal (2) G-P(sol) polarization free energy of solvation -27.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds