Wall clock time and date at job start Mon Mar 30 2020 03:16:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46892 * 111.00127 * 2 1 4 4 H 1.09005 * 109.47480 * 32.11684 * 3 2 1 5 5 C 1.50702 * 109.47658 * 152.11796 * 3 2 1 6 6 H 1.08002 * 120.00440 * 119.99198 * 5 3 2 7 7 C 1.37888 * 119.99746 * 300.00523 * 5 3 2 8 8 N 1.31510 * 119.99486 * 359.71586 * 7 5 3 9 9 Si 1.86792 * 119.99922 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.47142 * 179.71919 * 9 7 5 11 11 H 1.48499 * 109.47394 * 299.72174 * 9 7 5 12 12 H 1.48507 * 109.47174 * 59.72488 * 9 7 5 13 13 C 1.50708 * 109.47212 * 272.11749 * 3 2 1 14 14 C 1.38224 * 119.98443 * 333.91474 * 13 3 2 15 15 C 1.38187 * 120.04770 * 179.76443 * 14 13 3 16 16 C 1.38496 * 120.02700 * 0.51536 * 15 14 13 17 17 F 1.35098 * 120.01330 * 179.76803 * 16 15 14 18 18 C 1.38398 * 119.97127 * 359.74036 * 16 15 14 19 19 C 1.38438 * 119.94928 * 0.02562 * 18 16 15 20 20 F 1.35108 * 120.01095 * 180.02562 * 19 18 16 21 21 H 1.09002 * 109.47140 * 304.86488 * 1 2 3 22 22 H 1.09003 * 109.47549 * 64.86576 * 1 2 3 23 23 H 1.08999 * 109.47144 * 184.86936 * 1 2 3 24 24 H 1.00898 * 111.00208 * 123.95620 * 2 1 3 25 25 H 0.97001 * 120.00688 * 0.27811 * 8 7 5 26 26 H 1.07997 * 119.97685 * 0.02562 * 14 13 3 27 27 H 1.08004 * 119.98721 * 180.25195 * 15 14 13 28 28 H 1.07998 * 120.02341 * 180.02562 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 1 1.3130 2.0226 0.5464 5 6 3.3479 1.3904 0.6644 6 1 4.2156 1.7223 0.1136 7 6 3.4776 0.9837 1.9756 8 7 2.4202 0.5846 2.6478 9 14 5.1541 1.0066 2.7990 10 1 5.0239 0.5324 4.2002 11 1 6.0816 0.1140 2.0585 12 1 5.6897 2.3917 2.7930 13 6 2.1264 1.8592 -1.4199 14 6 2.3019 0.9525 -2.4484 15 6 2.4173 1.3981 -3.7514 16 6 2.3680 2.7544 -4.0270 17 9 2.4855 3.1900 -5.3004 18 6 2.1976 3.6634 -2.9973 19 6 2.0772 3.2156 -1.6929 20 9 1.9103 4.1018 -0.6869 21 1 -0.3633 0.5875 0.8432 22 1 -0.3634 0.4365 -0.9304 23 1 -0.3633 -1.0239 0.0872 24 1 1.8305 -0.5261 0.7813 25 1 1.5496 0.5724 2.2202 26 1 2.3446 -0.1051 -2.2340 27 1 2.5504 0.6885 -4.5547 28 1 2.1586 4.7213 -3.2113 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259389814.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:35 Heat of formation + Delta-G solvation = -84.018791 kcal Electronic energy + Delta-G solvation = -15611.964545 eV Core-core repulsion = 12683.998306 eV Total energy + Delta-G solvation = -2927.966239 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.96227 -49.93121 -40.07719 -37.61437 -33.98529 -32.08934 -31.67353 -28.42728 -25.72519 -24.65619 -23.80668 -22.02988 -19.55818 -19.10802 -18.12166 -17.03908 -16.83036 -16.56002 -16.26174 -15.93463 -15.64224 -15.47039 -15.14515 -14.99043 -14.41787 -13.99948 -13.55857 -13.19153 -12.80700 -12.68422 -12.62878 -12.32749 -11.98844 -11.87829 -10.95440 -10.78373 -9.97693 -9.48494 -9.32288 -8.65221 -6.49503 0.04833 0.11444 1.54525 1.60064 1.80781 2.44089 2.56798 2.91989 2.99129 3.51792 3.61559 3.78128 3.99043 4.09594 4.30344 4.47290 4.58425 4.79002 4.85039 4.89102 4.98933 5.02988 5.21271 5.48087 5.66098 5.88434 6.05639 6.33101 6.44295 6.68586 7.27859 8.63944 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.030065 B = 0.008954 C = 0.008177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.085435 B = 3126.312094 C = 3423.471673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.689 5.689 3 C 0.236 3.764 4 H -0.027 1.027 5 C -0.603 4.603 6 H 0.047 0.953 7 C -0.017 4.017 8 N -0.930 5.930 9 Si 1.116 2.884 10 H -0.282 1.282 11 H -0.266 1.266 12 H -0.278 1.278 13 C -0.099 4.099 14 C -0.044 4.044 15 C -0.152 4.152 16 C 0.107 3.893 17 F -0.133 7.133 18 C -0.189 4.189 19 C 0.095 3.905 20 F -0.147 7.147 21 H -0.003 1.003 22 H 0.061 0.939 23 H 0.079 0.921 24 H 0.344 0.656 25 H 0.260 0.740 26 H 0.152 0.848 27 H 0.170 0.830 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.673 0.947 -10.709 10.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.322 5.322 3 C 0.128 3.872 4 H -0.010 1.010 5 C -0.641 4.641 6 H 0.065 0.935 7 C -0.216 4.216 8 N -0.568 5.568 9 Si 0.938 3.062 10 H -0.207 1.207 11 H -0.191 1.191 12 H -0.204 1.204 13 C -0.100 4.100 14 C -0.063 4.063 15 C -0.170 4.170 16 C 0.088 3.912 17 F -0.112 7.112 18 C -0.209 4.209 19 C 0.076 3.924 20 F -0.126 7.126 21 H 0.016 0.984 22 H 0.080 0.920 23 H 0.098 0.902 24 H 0.164 0.836 25 H 0.071 0.929 26 H 0.170 0.830 27 H 0.188 0.812 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 0.128 0.600 -9.995 10.014 hybrid contribution -1.294 1.120 -0.193 1.722 sum -1.166 1.720 -10.189 10.398 Atomic orbital electron populations 1.22209 0.89102 1.01461 0.99211 1.60723 1.06555 1.15032 1.49915 1.17923 0.94492 0.86509 0.88307 1.00987 1.22221 0.93835 1.48519 0.99537 0.93468 1.27251 1.07505 0.91808 0.95025 1.70991 1.00123 1.45593 1.40130 0.82921 0.70393 0.77473 0.75440 1.20679 1.19097 1.20361 1.20415 0.99911 0.91592 0.98132 1.20896 0.94590 1.00922 0.89848 1.21472 1.03332 0.93962 0.98280 1.17211 1.03127 0.92485 0.78381 1.91494 1.93568 1.90394 1.35741 1.20996 1.07772 1.02110 0.89992 1.17502 1.03686 0.86608 0.84639 1.91446 1.92963 1.67942 1.60241 0.98425 0.91989 0.90195 0.83623 0.92897 0.83032 0.81235 0.82155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 10.32 127.69 1.32 2.47 15 2 N -0.69 -31.01 5.04 -522.48 -2.63 -33.64 15 3 C 0.24 11.77 1.52 43.43 0.07 11.84 15 4 H -0.03 -1.54 7.16 -2.38 -0.02 -1.56 15 5 C -0.60 -33.05 8.66 25.60 0.22 -32.82 15 6 H 0.05 2.62 7.74 -2.91 -0.02 2.59 15 7 C -0.02 -0.91 5.10 84.66 0.43 -0.47 15 8 N -0.93 -53.52 12.91 21.45 0.28 -53.25 15 9 Si 1.12 48.59 29.90 68.60 2.05 50.64 15 10 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 11 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 12 H -0.28 -11.63 7.11 99.48 0.71 -10.93 15 13 C -0.10 -4.22 4.92 -19.82 -0.10 -4.32 15 14 C -0.04 -1.57 9.32 22.25 0.21 -1.36 15 15 C -0.15 -4.35 10.02 22.32 0.22 -4.13 15 16 C 0.11 3.18 7.30 22.37 0.16 3.34 15 17 F -0.13 -3.63 17.27 44.97 0.78 -2.85 15 18 C -0.19 -6.15 10.01 22.36 0.22 -5.93 15 19 C 0.10 3.87 7.24 22.37 0.16 4.03 15 20 F -0.15 -6.56 16.55 44.97 0.74 -5.82 15 21 H 0.00 -0.12 7.81 -2.39 -0.02 -0.14 15 22 H 0.06 2.19 8.14 -2.39 -0.02 2.17 15 23 H 0.08 2.60 8.14 -2.39 -0.02 2.58 15 24 H 0.34 16.97 6.20 -89.70 -0.56 16.42 15 25 H 0.26 14.92 5.72 -92.71 -0.53 14.39 15 26 H 0.15 5.31 7.29 -2.91 -0.02 5.29 15 27 H 0.17 3.61 8.06 -2.91 -0.02 3.58 15 28 H 0.16 4.37 8.06 -2.91 -0.02 4.35 15 Total: -1.00 -60.03 251.71 5.01 -55.02 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.87 Total: 17.25 kcal Atomic # 6 Polarization: -30.28 SS G_CDS: 2.92 Total: -27.36 kcal Atomic # 7 Polarization: -84.54 SS G_CDS: -2.36 Total: -86.89 kcal Atomic # 9 Polarization: -10.19 SS G_CDS: 1.52 Total: -8.67 kcal Atomic # 14 Polarization: 48.59 SS G_CDS: 2.05 Total: 50.64 kcal Total: -60.03 5.01 -55.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259389814.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.995 kcal (2) G-P(sol) polarization free energy of solvation -60.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds