Wall clock time and date at job start Mon Mar 30 2020 02:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00035 * 2 1 4 4 H 1.48497 * 109.47249 * 270.00106 * 3 2 1 5 5 H 1.48509 * 109.46804 * 30.00046 * 3 2 1 6 6 H 1.48501 * 109.47101 * 149.99745 * 3 2 1 7 7 C 1.37879 * 120.00219 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99539 * 0.02562 * 7 2 1 9 9 C 1.50693 * 119.99917 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47118 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.47505 * 54.99466 * 10 9 7 12 12 N 1.46907 * 109.46764 * 295.00069 * 10 9 7 13 13 C 1.50703 * 109.47703 * 174.99994 * 10 9 7 14 14 C 1.38262 * 119.96205 * 79.99340 * 13 10 9 15 15 C 1.38212 * 120.06719 * 180.02562 * 14 13 10 16 16 C 1.38415 * 119.99983 * 0.02562 * 15 14 13 17 17 F 1.35100 * 120.03071 * 180.02562 * 16 15 14 18 18 C 1.38647 * 119.92948 * 359.97438 * 16 15 14 19 19 F 1.35098 * 120.03361 * 180.02562 * 18 16 15 20 20 C 1.38210 * 119.96287 * 260.00173 * 13 10 9 21 21 H 0.96994 * 120.00080 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47663 * 60.00485 * 9 7 2 23 23 H 1.09000 * 109.47533 * 299.99746 * 9 7 2 24 24 H 1.00902 * 110.99912 * 299.99376 * 12 10 9 25 25 H 1.00893 * 111.00372 * 63.95064 * 12 10 9 26 26 H 1.08002 * 119.96642 * 0.02562 * 14 13 10 27 27 H 1.07995 * 119.99910 * 180.27401 * 15 14 13 28 28 H 1.08001 * 120.00275 * 359.97164 * 20 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0001 11 1 3.5866 -3.1758 -0.8414 12 7 3.6334 -3.2929 1.2557 13 6 5.5235 -2.6384 -0.1243 14 6 6.3088 -2.3966 0.9877 15 6 7.6864 -2.3974 0.8759 16 6 8.2812 -2.6397 -0.3502 17 9 9.6277 -2.6410 -0.4600 18 6 7.4936 -2.8821 -1.4652 19 9 8.0719 -3.1194 -2.6629 20 6 6.1143 -2.8816 -1.3499 21 1 -0.4850 0.8400 -0.0004 22 1 3.8753 -0.6796 0.8895 23 1 3.8746 -0.6808 -0.8905 24 1 4.0246 -2.8114 2.0514 25 1 2.6298 -3.3620 1.3324 26 1 5.8453 -2.2071 1.9446 27 1 8.2988 -2.2128 1.7461 28 1 5.4998 -3.0706 -2.2177 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259390042.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:18 Heat of formation + Delta-G solvation = -94.942127 kcal Electronic energy + Delta-G solvation = -15101.699032 eV Core-core repulsion = 12173.259121 eV Total energy + Delta-G solvation = -2928.439911 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.49622 -49.57856 -40.38018 -36.94485 -34.48711 -32.02599 -30.86291 -30.43379 -26.23224 -24.24490 -23.63728 -21.42014 -19.34738 -18.81705 -18.13033 -17.73131 -17.33242 -16.77100 -16.32377 -16.00944 -15.49651 -15.24784 -15.04788 -14.89658 -14.45186 -14.08683 -13.85488 -13.43594 -13.03987 -12.73872 -12.56197 -12.16246 -12.00830 -11.74429 -11.29675 -10.79376 -10.06605 -9.73186 -9.34631 -8.29909 -6.33899 -0.08023 0.04137 1.34711 1.37166 1.46359 2.33919 2.39341 2.77926 3.05777 3.27335 3.52103 3.70448 4.04559 4.14077 4.18915 4.41128 4.70651 4.78393 4.83268 4.92938 5.02958 5.18529 5.26457 5.55730 5.60478 5.77208 6.21796 6.35997 6.71909 6.74547 7.31479 8.85608 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.036306 B = 0.006789 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.046020 B = 4123.085340 C = 4259.254953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.246 1.246 7 C -0.524 4.524 8 H 0.046 0.954 9 C -0.034 4.034 10 C 0.144 3.856 11 H 0.075 0.925 12 N -0.830 5.830 13 C -0.047 4.047 14 C -0.088 4.088 15 C -0.111 4.111 16 C 0.044 3.956 17 F -0.138 7.138 18 C 0.054 3.946 19 F -0.140 7.140 20 C -0.128 4.128 21 H 0.265 0.735 22 H 0.027 0.973 23 H 0.015 0.985 24 H 0.340 0.660 25 H 0.348 0.652 26 H 0.156 0.844 27 H 0.176 0.824 28 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.471 -3.612 2.145 16.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.186 4.186 3 Si 0.765 3.235 4 H -0.200 1.200 5 H -0.214 1.214 6 H -0.169 1.169 7 C -0.562 4.562 8 H 0.064 0.936 9 C -0.073 4.073 10 C 0.032 3.968 11 H 0.094 0.906 12 N -0.360 5.360 13 C -0.048 4.048 14 C -0.106 4.106 15 C -0.129 4.129 16 C 0.024 3.976 17 F -0.117 7.117 18 C 0.034 3.966 19 F -0.118 7.118 20 C -0.147 4.147 21 H 0.074 0.926 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.153 0.847 25 H 0.161 0.839 26 H 0.174 0.826 27 H 0.193 0.807 28 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 15.788 -4.164 1.816 16.429 hybrid contribution -0.408 1.664 -0.405 1.761 sum 15.380 -2.500 1.411 15.646 Atomic orbital electron populations 1.70043 1.08126 1.28006 1.52429 1.25859 0.95384 1.03007 0.94326 0.85814 0.79667 0.79216 0.78840 1.19980 1.21360 1.16945 1.21322 0.91246 0.93332 1.50274 0.93607 1.20281 0.94746 0.95144 0.97163 1.20114 0.88698 0.93649 0.94332 0.90649 1.59221 1.17372 1.56073 1.03301 1.19955 0.96057 0.95993 0.92773 1.21147 0.92289 0.97573 0.99584 1.21316 0.95596 0.99984 0.96016 1.17839 0.76987 1.08003 0.94765 1.91487 1.28888 1.94484 1.96826 1.17747 0.91641 1.06707 0.80478 1.91482 1.84786 1.92306 1.43257 1.21039 0.91721 1.02088 0.99858 0.92598 0.95484 0.96662 0.84685 0.83895 0.82603 0.80693 0.83183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.43 13.96 21.45 0.30 -56.13 15 2 C 0.01 0.65 5.47 84.66 0.46 1.12 15 3 Si 0.94 42.14 27.47 68.60 1.88 44.02 15 4 H -0.27 -12.14 7.11 99.48 0.71 -11.44 15 5 H -0.29 -12.84 7.11 99.48 0.71 -12.13 15 6 H -0.25 -10.11 6.54 99.48 0.65 -9.46 15 7 C -0.52 -27.23 9.10 25.60 0.23 -27.00 15 8 H 0.05 2.59 7.39 -2.91 -0.02 2.57 15 9 C -0.03 -1.43 3.67 29.85 0.11 -1.32 15 10 C 0.14 4.95 2.99 44.17 0.13 5.08 15 11 H 0.08 2.76 8.00 -2.39 -0.02 2.74 15 12 N -0.83 -26.25 9.02 -171.78 -1.55 -27.80 15 13 C -0.05 -1.37 4.96 -19.86 -0.10 -1.47 15 14 C -0.09 -2.12 9.29 22.27 0.21 -1.91 15 15 C -0.11 -2.39 10.02 22.31 0.22 -2.17 15 16 C 0.04 1.15 7.31 22.41 0.16 1.31 15 17 F -0.14 -3.68 17.18 44.97 0.77 -2.90 15 18 C 0.05 1.54 7.31 22.41 0.16 1.70 15 19 F -0.14 -4.13 17.18 44.97 0.77 -3.36 15 20 C -0.13 -3.64 9.65 22.30 0.22 -3.42 15 21 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 22 H 0.03 1.09 7.20 -2.39 -0.02 1.07 15 23 H 0.02 0.64 7.57 -2.39 -0.02 0.62 15 24 H 0.34 9.41 7.34 -89.69 -0.66 8.75 15 25 H 0.35 12.17 7.90 -89.70 -0.71 11.46 15 26 H 0.16 3.18 6.66 -2.91 -0.02 3.16 15 27 H 0.18 2.59 8.06 -2.91 -0.02 2.57 15 28 H 0.15 3.99 8.04 -2.91 -0.02 3.97 15 Total: -1.00 -59.98 251.79 3.78 -56.20 By element: Atomic # 1 Polarization: 18.26 SS G_CDS: -0.22 Total: 18.04 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 1.81 Total: -28.07 kcal Atomic # 7 Polarization: -82.68 SS G_CDS: -1.25 Total: -83.93 kcal Atomic # 9 Polarization: -7.80 SS G_CDS: 1.55 Total: -6.26 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 1.88 Total: 44.02 kcal Total: -59.98 3.78 -56.20 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259390042.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.743 kcal (2) G-P(sol) polarization free energy of solvation -59.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds