Wall clock time and date at job start Mon Mar 30 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30662 * 1 3 3 Si 1.86808 * 120.00043 * 2 1 4 4 H 1.48503 * 109.46911 * 274.98901 * 3 2 1 5 5 H 1.48495 * 109.46757 * 34.98755 * 3 2 1 6 6 H 1.48498 * 109.46852 * 154.98820 * 3 2 1 7 7 C 1.40190 * 120.00395 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00467 * 173.68444 * 7 2 1 9 9 C 1.40954 * 119.99424 * 353.96028 * 7 2 1 10 10 C 1.41051 * 120.10122 * 185.87551 * 9 7 2 11 11 N 1.31493 * 119.87879 * 179.97438 * 10 9 7 12 12 C 1.33326 * 120.08596 * 359.97438 * 11 10 9 13 13 C 1.47975 * 119.89750 * 179.97438 * 12 11 10 14 14 C 1.39565 * 119.73854 * 359.72772 * 13 12 11 15 15 C 1.38393 * 119.05021 * 179.79464 * 14 13 12 16 16 C 1.38797 * 118.51735 * 0.47092 * 15 14 13 17 17 C 1.38418 * 119.39315 * 359.75140 * 16 15 14 18 18 N 1.31644 * 120.91592 * 0.02562 * 17 16 15 19 19 C 1.40118 * 120.20985 * 0.02562 * 12 11 10 20 20 N 1.31468 * 120.12398 * 359.74032 * 19 12 11 21 21 H 0.96996 * 119.99946 * 359.97438 * 1 2 3 22 22 H 1.08003 * 120.06205 * 359.95121 * 10 9 7 23 23 H 1.07996 * 120.48010 * 0.02562 * 14 13 12 24 24 H 1.08001 * 120.74720 * 180.22653 * 15 14 13 25 25 H 1.08000 * 120.30307 * 179.72551 * 16 15 14 26 26 H 1.07994 * 119.54410 * 180.02562 * 17 16 15 27 27 H 1.08000 * 119.93915 * 180.02562 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3827 2.1073 -1.3948 5 1 1.4948 2.6199 0.8028 6 1 3.5869 1.4120 0.5920 7 6 2.0077 -1.2140 -0.0005 8 1 3.0827 -1.2168 -0.1034 9 6 1.3087 -2.4314 0.1274 10 6 2.0176 -3.6444 0.2517 11 7 1.3612 -4.7775 0.3712 12 6 0.0279 -4.7803 0.3755 13 6 -0.7066 -6.0578 0.5098 14 6 0.0017 -7.2548 0.6255 15 6 -0.6996 -8.4408 0.7546 16 6 -2.0867 -8.3939 0.7540 17 6 -2.7251 -7.1719 0.6305 18 7 -2.0349 -6.0571 0.5135 19 6 -0.6800 -3.5773 0.2523 20 7 -0.0320 -2.4393 0.1369 21 1 -0.4850 0.8400 0.0004 22 1 3.0977 -3.6427 0.2483 23 1 1.0817 -7.2551 0.6182 24 1 -0.1792 -9.3824 0.8498 25 1 -2.6628 -9.3025 0.8485 26 1 -3.8043 -7.1325 0.6301 27 1 -1.7600 -3.5846 0.2567 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259590251.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:01 Heat of formation + Delta-G solvation = 52.048383 kcal Electronic energy + Delta-G solvation = -14178.536057 eV Core-core repulsion = 11707.159319 eV Total energy + Delta-G solvation = -2471.376738 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.21925 -40.24039 -36.12776 -34.12967 -33.55345 -32.83921 -31.11544 -27.94446 -25.15050 -24.76724 -23.57688 -22.65711 -19.61085 -18.26312 -17.93420 -17.12733 -16.64578 -16.23393 -15.84468 -15.38989 -15.34112 -14.44740 -14.36193 -13.93728 -13.56912 -13.34359 -13.03502 -12.66828 -12.47030 -12.01596 -11.79989 -11.53162 -11.08696 -10.76593 -10.42982 -10.35151 -9.38600 -9.28779 -8.48366 -6.71109 -0.12453 0.50244 0.80986 1.15853 1.40602 1.54550 1.59397 2.15229 2.64212 3.11498 3.26182 3.78888 3.95590 4.05646 4.12152 4.23671 4.37427 4.48623 4.53252 4.81557 4.95350 4.98878 5.10692 5.16084 5.36474 5.40784 5.66978 5.93411 6.04002 6.37313 6.57964 7.16951 7.25868 7.83663 8.18876 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.070698 B = 0.005935 C = 0.005490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 395.954032 B = 4716.583854 C = 5099.417929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.734 5.734 2 C 0.013 3.987 3 Si 1.002 2.998 4 H -0.259 1.259 5 H -0.268 1.268 6 H -0.245 1.245 7 C -0.406 4.406 8 H 0.116 0.884 9 C 0.165 3.835 10 C -0.059 4.059 11 N -0.417 5.417 12 C -0.100 4.100 13 C 0.192 3.808 14 C -0.179 4.179 15 C -0.070 4.070 16 C -0.187 4.187 17 C 0.093 3.907 18 N -0.525 5.525 19 C 0.122 3.878 20 N -0.498 5.498 21 H 0.290 0.710 22 H 0.163 0.837 23 H 0.129 0.871 24 H 0.166 0.834 25 H 0.172 0.828 26 H 0.182 0.818 27 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.954 -7.530 1.001 7.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.353 5.353 2 C -0.212 4.212 3 Si 0.820 3.180 4 H -0.183 1.183 5 H -0.193 1.193 6 H -0.168 1.168 7 C -0.436 4.436 8 H 0.134 0.866 9 C 0.041 3.959 10 C -0.234 4.234 11 N -0.129 5.129 12 C -0.235 4.235 13 C 0.058 3.942 14 C -0.200 4.200 15 C -0.096 4.096 16 C -0.207 4.207 17 C -0.066 4.066 18 N -0.237 5.237 19 C -0.049 4.049 20 N -0.215 5.215 21 H 0.101 0.899 22 H 0.180 0.820 23 H 0.147 0.853 24 H 0.183 0.817 25 H 0.190 0.810 26 H 0.199 0.801 27 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.623 -6.611 0.922 6.869 hybrid contribution 0.566 -0.011 0.035 0.567 sum -1.057 -6.622 0.958 6.774 Atomic orbital electron populations 1.70164 1.09623 1.30625 1.24914 1.27387 0.95820 1.05561 0.92426 0.84887 0.79218 0.74202 0.79677 1.18319 1.19263 1.16813 1.20356 0.96496 0.89676 1.37112 0.86621 1.20027 0.89784 0.94899 0.91154 1.23511 1.00303 0.88518 1.11101 1.67529 1.07996 1.30309 1.07108 1.19700 0.90152 0.93025 1.20634 1.19302 0.89054 0.91646 0.94245 1.22141 1.01699 0.92878 1.03275 1.21901 0.94895 0.98183 0.94605 1.22497 0.95158 1.00136 1.02895 1.23287 1.01323 0.87581 0.94398 1.67497 1.07626 1.33268 1.15269 1.23710 1.00612 0.89095 0.91487 1.69551 1.08540 1.25520 1.17902 0.89902 0.82011 0.85299 0.81672 0.81010 0.80093 0.83928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -37.92 11.49 21.87 0.25 -37.67 15 2 C 0.01 0.62 5.49 85.34 0.47 1.09 15 3 Si 1.00 34.52 29.57 68.60 2.03 36.55 15 4 H -0.26 -8.57 7.11 99.48 0.71 -7.87 15 5 H -0.27 -8.98 7.11 99.48 0.71 -8.27 15 6 H -0.25 -7.93 7.11 99.48 0.71 -7.22 15 7 C -0.41 -20.46 9.14 23.41 0.21 -20.24 15 8 H 0.12 5.12 7.86 -2.92 -0.02 5.10 15 9 C 0.17 9.09 6.54 40.16 0.26 9.35 15 10 C -0.06 -3.00 10.98 85.43 0.94 -2.06 15 11 N -0.42 -21.18 9.54 -182.10 -1.74 -22.91 15 12 C -0.10 -5.13 6.74 41.96 0.28 -4.85 15 13 C 0.19 8.42 6.73 41.90 0.28 8.70 15 14 C -0.18 -6.55 9.62 22.63 0.22 -6.33 15 15 C -0.07 -1.87 10.17 22.44 0.23 -1.64 15 16 C -0.19 -4.41 10.11 22.45 0.23 -4.18 15 17 C 0.09 2.70 11.18 84.76 0.95 3.65 15 18 N -0.53 -21.04 9.41 -184.86 -1.74 -22.78 15 19 C 0.12 6.61 10.75 85.20 0.92 7.52 15 20 N -0.50 -28.78 8.04 -187.71 -1.51 -30.29 15 21 H 0.29 13.33 8.29 -92.71 -0.77 12.56 15 22 H 0.16 7.06 8.06 -2.91 -0.02 7.04 15 23 H 0.13 4.80 7.54 -2.91 -0.02 4.78 15 24 H 0.17 3.01 8.06 -2.91 -0.02 2.99 15 25 H 0.17 2.45 8.06 -2.91 -0.02 2.42 15 26 H 0.18 3.86 8.06 -2.91 -0.02 3.83 15 27 H 0.14 7.36 7.52 -2.91 -0.02 7.34 15 Total: -1.00 -66.87 250.24 3.47 -63.40 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 1.19 Total: 22.70 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 4.98 Total: -8.99 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -4.73 Total: -113.65 kcal Atomic # 14 Polarization: 34.52 SS G_CDS: 2.03 Total: 36.55 kcal Total: -66.87 3.47 -63.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259590251.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.446 kcal (2) G-P(sol) polarization free energy of solvation -66.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds