Wall clock time and date at job start Mon Mar 30 2020 02:49:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30731 * 1
3 3 Si 1.86801 * 120.00324 * 2 1
4 4 H 1.48502 * 109.47188 * 240.00526 * 3 2 1
5 5 H 1.48499 * 109.46803 * 0.02562 * 3 2 1
6 6 H 1.48497 * 109.46930 * 120.00132 * 3 2 1
7 7 C 1.40044 * 120.00038 * 180.02562 * 2 1 3
8 8 H 1.07993 * 120.00331 * 179.97438 * 7 2 1
9 9 C 1.41417 * 119.99777 * 359.97438 * 7 2 1
10 10 C 1.40505 * 119.77766 * 180.25616 * 9 7 2
11 11 C 1.39294 * 118.83437 * 180.24556 * 10 9 7
12 12 C 1.48386 * 120.82135 * 179.77870 * 11 10 9
13 13 C 1.39465 * 120.10804 * 184.72142 * 12 11 10
14 14 N 1.31995 * 119.87086 * 180.28032 * 13 12 11
15 15 C 1.32208 * 120.08715 * 359.48962 * 14 13 12
16 16 C 1.38443 * 120.21090 * 0.51181 * 15 14 13
17 17 N 1.32005 * 120.13366 * 359.74492 * 16 15 14
18 18 C 1.40035 * 118.35852 * 359.51022 * 11 10 9
19 19 C 1.38542 * 119.41955 * 0.24768 * 18 11 10
20 20 N 1.31457 * 121.14411 * 0.02562 * 19 18 11
21 21 H 0.97008 * 120.00059 * 359.97438 * 1 2 3
22 22 H 1.07998 * 120.58203 * 0.02988 * 10 9 7
23 23 H 1.08002 * 120.05968 * 359.97438 * 13 12 11
24 24 H 1.07996 * 119.88861 * 180.23514 * 15 14 13
25 25 H 1.08001 * 119.92852 * 179.71948 * 16 15 14
26 26 H 1.07999 * 120.29151 * 180.26927 * 18 11 10
27 27 H 1.07992 * 119.42872 * 179.97438 * 19 18 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3073 0.0000 0.0000
3 14 2.2414 1.6177 0.0000
4 1 3.0951 1.6964 -1.2126
5 1 1.2764 2.7464 0.0006
6 1 3.0952 1.6962 1.2125
7 6 2.0075 -1.2128 -0.0005
8 1 3.0875 -1.2129 -0.0010
9 6 1.3004 -2.4375 -0.0005
10 6 2.0076 -3.6516 0.0044
11 6 1.2914 -4.8463 -0.0010
12 6 1.9933 -6.1536 -0.0010
13 6 1.2654 -7.3386 -0.1057
14 7 1.8942 -8.4991 -0.0997
15 6 3.2123 -8.5383 -0.0049
16 6 3.9384 -7.3642 0.0992
17 7 3.3179 -6.1990 0.0992
18 6 -0.1076 -4.7831 -0.0005
19 6 -0.7330 -3.5469 0.0000
20 7 -0.0359 -2.4323 -0.0005
21 1 -0.4850 0.8401 0.0004
22 1 3.0876 -3.6584 0.0086
23 1 0.1889 -7.3068 -0.1865
24 1 3.7237 -9.4894 -0.0041
25 1 5.0147 -7.4017 0.1810
26 1 -0.6938 -5.6901 -0.0001
27 1 -1.8118 -3.4980 0.0000
RHF calculation, no. of doubly occupied orbitals= 40
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259653805.mol2 27
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:49:56
Heat of formation + Delta-G solvation = 79.529262 kcal
Electronic energy + Delta-G solvation = -14198.357785 eV
Core-core repulsion = 11728.172707 eV
Total energy + Delta-G solvation = -2470.185077 eV
No. of doubly occupied orbitals = 40
Molecular weight
(most abundant/longest-lived isotopes) = 227.075 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.70320 -38.11671 -34.22866 -33.70826 -32.38294 -30.10417 -29.31801 -25.91971
-24.52369 -24.06725 -21.30202 -20.97190 -17.74844 -17.09439 -16.76367 -15.85121
-15.09264 -14.58306 -14.51315 -14.03446 -13.86046 -12.99694 -12.51274 -12.30212
-12.09837 -11.36153 -11.27853 -11.16656 -11.00333 -10.85374 -10.50005 -10.02463
-9.76538 -9.27080 -8.78869 -7.87309 -7.74256 -7.66461 -6.47400 -4.59160
0.84130 1.35192 2.69190 2.90662 3.05841 3.08207 3.15215 3.90531
4.12187 4.29859 4.50249 4.70769 4.73857 5.07059 5.46859 5.58964
5.66286 5.82752 6.01855 6.32597 6.58093 6.65893 6.77323 7.04432
7.22666 7.36941 7.51451 7.56385 7.87279 8.10362 8.15747 8.56142
8.82517 10.01972 10.24532
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.047921 B = 0.006468 C = 0.005712
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 584.157900 B = 4327.969256 C = 4900.713420
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.713 5.713
2 C 0.067 3.933
3 Si 0.909 3.091
4 H -0.264 1.264
5 H -0.277 1.277
6 H -0.264 1.264
7 C -0.425 4.425
8 H 0.086 0.914
9 C 0.248 3.752
10 C -0.213 4.213
11 C -0.010 4.010
12 C 0.152 3.848
13 C 0.051 3.949
14 N -0.440 5.440
15 C 0.019 3.981
16 C 0.054 3.946
17 N -0.436 5.436
18 C -0.301 4.301
19 C 0.126 3.874
20 N -0.479 5.479
21 H 0.275 0.725
22 H 0.113 0.887
23 H 0.171 0.829
24 H 0.163 0.837
25 H 0.165 0.835
26 H 0.100 0.900
27 H 0.124 0.876
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.584 -7.936 -0.013 8.708
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.334 5.334
2 C -0.158 4.158
3 Si 0.733 3.267
4 H -0.188 1.188
5 H -0.202 1.202
6 H -0.189 1.189
7 C -0.456 4.456
8 H 0.104 0.896
9 C 0.123 3.877
10 C -0.237 4.237
11 C -0.017 4.017
12 C 0.014 3.986
13 C -0.110 4.110
14 N -0.154 5.154
15 C -0.141 4.141
16 C -0.107 4.107
17 N -0.151 5.151
18 C -0.325 4.325
19 C -0.039 4.039
20 N -0.192 5.192
21 H 0.086 0.914
22 H 0.131 0.869
23 H 0.188 0.812
24 H 0.180 0.820
25 H 0.182 0.818
26 H 0.118 0.882
27 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 3.004 -6.986 -0.005 7.604
hybrid contribution 0.875 -0.264 0.008 0.914
sum 3.879 -7.250 0.002 8.222
Atomic orbital electron populations
1.70114 1.07224 1.28071 1.28000 1.26083 0.94946 1.01164 0.93629
0.86354 0.80079 0.80242 0.79993 1.18850 1.20157 1.18852 1.19643
0.94394 0.89322 1.42278 0.89636 1.18614 0.88349 0.91723 0.89009
1.22009 0.99476 0.92054 1.10194 1.18191 0.92760 0.89062 1.01697
1.21166 0.89585 0.95162 0.92697 1.23796 1.01987 0.87818 0.97380
1.68368 1.09926 1.28559 1.08549 1.23634 0.91038 0.99852 0.99539
1.23735 1.01741 0.88813 0.96410 1.68515 1.09587 1.27947 1.09038
1.21273 0.92704 0.98374 1.20171 1.22448 0.98939 0.88328 0.94198
1.68703 1.07237 1.26870 1.16429 0.91411 0.86906 0.81165 0.81956
0.81760 0.88222 0.85894
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.71 -18.69 11.46 55.55 0.64 -18.05 15
2 C 0.07 1.69 5.50 -17.34 -0.10 1.60 15
3 Si 0.91 18.33 29.56 -169.99 -5.02 13.31 15
4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15
5 H -0.28 -5.43 7.11 56.52 0.40 -5.02 15
6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15
7 C -0.43 -11.26 9.14 -37.70 -0.34 -11.61 15
8 H 0.09 2.12 7.85 -52.49 -0.41 1.70 15
9 C 0.25 6.71 6.55 -85.02 -0.56 6.15 15
10 C -0.21 -5.28 9.39 -38.34 -0.36 -5.64 15
11 C -0.01 -0.22 5.90 -104.65 -0.62 -0.84 15
12 C 0.15 2.97 6.73 -82.76 -0.56 2.41 15
13 C 0.05 0.87 10.63 -17.02 -0.18 0.69 15
14 N -0.44 -6.94 10.49 -12.78 -0.13 -7.07 15
15 C 0.02 0.24 11.22 -17.31 -0.19 0.05 15
16 C 0.05 0.76 11.22 -17.40 -0.20 0.57 15
17 N -0.44 -8.11 9.71 -9.58 -0.09 -8.21 15
18 C -0.30 -6.45 9.51 -38.80 -0.37 -6.82 15
19 C 0.13 2.94 11.17 -17.60 -0.20 2.74 15
20 N -0.48 -12.98 7.84 -11.20 -0.09 -13.06 15
21 H 0.27 6.52 8.29 -40.82 -0.34 6.18 15
22 H 0.11 2.72 7.65 -52.49 -0.40 2.32 15
23 H 0.17 2.57 6.32 -52.49 -0.33 2.24 15
24 H 0.16 1.47 8.06 -52.49 -0.42 1.04 15
25 H 0.17 1.66 8.06 -52.49 -0.42 1.23 15
26 H 0.10 1.78 6.35 -52.49 -0.33 1.45 15
27 H 0.12 2.51 8.06 -52.49 -0.42 2.09 15
LS Contribution 247.97 15.07 3.74 3.74
Total: -1.00 -30.01 247.97 -6.51 -36.52
By element:
Atomic # 1 Polarization: 5.41 SS G_CDS: -1.88 Total: 3.52 kcal
Atomic # 6 Polarization: -7.03 SS G_CDS: -3.67 Total: -10.69 kcal
Atomic # 7 Polarization: -46.72 SS G_CDS: 0.32 Total: -46.40 kcal
Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal
Total LS contribution 3.74 Total: 3.74 kcal
Total: -30.01 -6.51 -36.52 kcal
The number of atoms in the molecule is 27
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259653805.mol2 27
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.051 kcal
(2) G-P(sol) polarization free energy of solvation -30.007 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.044 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal
(6) G-S(sol) free energy of system = (1) + (5) 79.529 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds