Wall clock time and date at job start Mon Mar 30 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86801 * 120.00324 * 2 1 4 4 H 1.48502 * 109.47188 * 240.00526 * 3 2 1 5 5 H 1.48499 * 109.46803 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46930 * 120.00132 * 3 2 1 7 7 C 1.40044 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 179.97438 * 7 2 1 9 9 C 1.41417 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.40505 * 119.77766 * 180.25616 * 9 7 2 11 11 C 1.39294 * 118.83437 * 180.24556 * 10 9 7 12 12 C 1.48386 * 120.82135 * 179.77870 * 11 10 9 13 13 C 1.39465 * 120.10804 * 184.72142 * 12 11 10 14 14 N 1.31995 * 119.87086 * 180.28032 * 13 12 11 15 15 C 1.32208 * 120.08715 * 359.48962 * 14 13 12 16 16 C 1.38443 * 120.21090 * 0.51181 * 15 14 13 17 17 N 1.32005 * 120.13366 * 359.74492 * 16 15 14 18 18 C 1.40035 * 118.35852 * 359.51022 * 11 10 9 19 19 C 1.38542 * 119.41955 * 0.24768 * 18 11 10 20 20 N 1.31457 * 121.14411 * 0.02562 * 19 18 11 21 21 H 0.97008 * 120.00059 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.58203 * 0.02988 * 10 9 7 23 23 H 1.08002 * 120.05968 * 359.97438 * 13 12 11 24 24 H 1.07996 * 119.88861 * 180.23514 * 15 14 13 25 25 H 1.08001 * 119.92852 * 179.71948 * 16 15 14 26 26 H 1.07999 * 120.29151 * 180.26927 * 18 11 10 27 27 H 1.07992 * 119.42872 * 179.97438 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6962 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2129 -0.0010 9 6 1.3004 -2.4375 -0.0005 10 6 2.0076 -3.6516 0.0044 11 6 1.2914 -4.8463 -0.0010 12 6 1.9933 -6.1536 -0.0010 13 6 1.2654 -7.3386 -0.1057 14 7 1.8942 -8.4991 -0.0997 15 6 3.2123 -8.5383 -0.0049 16 6 3.9384 -7.3642 0.0992 17 7 3.3179 -6.1990 0.0992 18 6 -0.1076 -4.7831 -0.0005 19 6 -0.7330 -3.5469 0.0000 20 7 -0.0359 -2.4323 -0.0005 21 1 -0.4850 0.8401 0.0004 22 1 3.0876 -3.6584 0.0086 23 1 0.1889 -7.3068 -0.1865 24 1 3.7237 -9.4894 -0.0041 25 1 5.0147 -7.4017 0.1810 26 1 -0.6938 -5.6901 -0.0001 27 1 -1.8118 -3.4980 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259653805.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:56 Heat of formation + Delta-G solvation = 79.529262 kcal Electronic energy + Delta-G solvation = -14198.357785 eV Core-core repulsion = 11728.172707 eV Total energy + Delta-G solvation = -2470.185077 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.075 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.70320 -38.11671 -34.22866 -33.70826 -32.38294 -30.10417 -29.31801 -25.91971 -24.52369 -24.06725 -21.30202 -20.97190 -17.74844 -17.09439 -16.76367 -15.85121 -15.09264 -14.58306 -14.51315 -14.03446 -13.86046 -12.99694 -12.51274 -12.30212 -12.09837 -11.36153 -11.27853 -11.16656 -11.00333 -10.85374 -10.50005 -10.02463 -9.76538 -9.27080 -8.78869 -7.87309 -7.74256 -7.66461 -6.47400 -4.59160 0.84130 1.35192 2.69190 2.90662 3.05841 3.08207 3.15215 3.90531 4.12187 4.29859 4.50249 4.70769 4.73857 5.07059 5.46859 5.58964 5.66286 5.82752 6.01855 6.32597 6.58093 6.65893 6.77323 7.04432 7.22666 7.36941 7.51451 7.56385 7.87279 8.10362 8.15747 8.56142 8.82517 10.01972 10.24532 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.047921 B = 0.006468 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.157900 B = 4327.969256 C = 4900.713420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.713 5.713 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.425 4.425 8 H 0.086 0.914 9 C 0.248 3.752 10 C -0.213 4.213 11 C -0.010 4.010 12 C 0.152 3.848 13 C 0.051 3.949 14 N -0.440 5.440 15 C 0.019 3.981 16 C 0.054 3.946 17 N -0.436 5.436 18 C -0.301 4.301 19 C 0.126 3.874 20 N -0.479 5.479 21 H 0.275 0.725 22 H 0.113 0.887 23 H 0.171 0.829 24 H 0.163 0.837 25 H 0.165 0.835 26 H 0.100 0.900 27 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.584 -7.936 -0.013 8.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.158 4.158 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.456 4.456 8 H 0.104 0.896 9 C 0.123 3.877 10 C -0.237 4.237 11 C -0.017 4.017 12 C 0.014 3.986 13 C -0.110 4.110 14 N -0.154 5.154 15 C -0.141 4.141 16 C -0.107 4.107 17 N -0.151 5.151 18 C -0.325 4.325 19 C -0.039 4.039 20 N -0.192 5.192 21 H 0.086 0.914 22 H 0.131 0.869 23 H 0.188 0.812 24 H 0.180 0.820 25 H 0.182 0.818 26 H 0.118 0.882 27 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 3.004 -6.986 -0.005 7.604 hybrid contribution 0.875 -0.264 0.008 0.914 sum 3.879 -7.250 0.002 8.222 Atomic orbital electron populations 1.70114 1.07224 1.28071 1.28000 1.26083 0.94946 1.01164 0.93629 0.86354 0.80079 0.80242 0.79993 1.18850 1.20157 1.18852 1.19643 0.94394 0.89322 1.42278 0.89636 1.18614 0.88349 0.91723 0.89009 1.22009 0.99476 0.92054 1.10194 1.18191 0.92760 0.89062 1.01697 1.21166 0.89585 0.95162 0.92697 1.23796 1.01987 0.87818 0.97380 1.68368 1.09926 1.28559 1.08549 1.23634 0.91038 0.99852 0.99539 1.23735 1.01741 0.88813 0.96410 1.68515 1.09587 1.27947 1.09038 1.21273 0.92704 0.98374 1.20171 1.22448 0.98939 0.88328 0.94198 1.68703 1.07237 1.26870 1.16429 0.91411 0.86906 0.81165 0.81956 0.81760 0.88222 0.85894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.69 11.46 55.55 0.64 -18.05 15 2 C 0.07 1.69 5.50 -17.34 -0.10 1.60 15 3 Si 0.91 18.33 29.56 -169.99 -5.02 13.31 15 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 5 H -0.28 -5.43 7.11 56.52 0.40 -5.02 15 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 7 C -0.43 -11.26 9.14 -37.70 -0.34 -11.61 15 8 H 0.09 2.12 7.85 -52.49 -0.41 1.70 15 9 C 0.25 6.71 6.55 -85.02 -0.56 6.15 15 10 C -0.21 -5.28 9.39 -38.34 -0.36 -5.64 15 11 C -0.01 -0.22 5.90 -104.65 -0.62 -0.84 15 12 C 0.15 2.97 6.73 -82.76 -0.56 2.41 15 13 C 0.05 0.87 10.63 -17.02 -0.18 0.69 15 14 N -0.44 -6.94 10.49 -12.78 -0.13 -7.07 15 15 C 0.02 0.24 11.22 -17.31 -0.19 0.05 15 16 C 0.05 0.76 11.22 -17.40 -0.20 0.57 15 17 N -0.44 -8.11 9.71 -9.58 -0.09 -8.21 15 18 C -0.30 -6.45 9.51 -38.80 -0.37 -6.82 15 19 C 0.13 2.94 11.17 -17.60 -0.20 2.74 15 20 N -0.48 -12.98 7.84 -11.20 -0.09 -13.06 15 21 H 0.27 6.52 8.29 -40.82 -0.34 6.18 15 22 H 0.11 2.72 7.65 -52.49 -0.40 2.32 15 23 H 0.17 2.57 6.32 -52.49 -0.33 2.24 15 24 H 0.16 1.47 8.06 -52.49 -0.42 1.04 15 25 H 0.17 1.66 8.06 -52.49 -0.42 1.23 15 26 H 0.10 1.78 6.35 -52.49 -0.33 1.45 15 27 H 0.12 2.51 8.06 -52.49 -0.42 2.09 15 LS Contribution 247.97 15.07 3.74 3.74 Total: -1.00 -30.01 247.97 -6.51 -36.52 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -1.88 Total: 3.52 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: -3.67 Total: -10.69 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.32 Total: -46.40 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.01 -6.51 -36.52 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653805.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.051 kcal (2) G-P(sol) polarization free energy of solvation -30.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds