Wall clock time and date at job start Mon Mar 30 2020 02:49:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30731 * 1 3 3 Si 1.86801 * 120.00324 * 2 1 4 4 H 1.48502 * 109.47188 * 240.00526 * 3 2 1 5 5 H 1.48499 * 109.46803 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46930 * 120.00132 * 3 2 1 7 7 C 1.40044 * 120.00038 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00331 * 179.97438 * 7 2 1 9 9 C 1.41417 * 119.99777 * 359.97438 * 7 2 1 10 10 C 1.40505 * 119.77766 * 180.25616 * 9 7 2 11 11 C 1.39294 * 118.83437 * 180.24556 * 10 9 7 12 12 C 1.48386 * 120.82135 * 179.77870 * 11 10 9 13 13 C 1.39465 * 120.10804 * 184.72142 * 12 11 10 14 14 N 1.31995 * 119.87086 * 180.28032 * 13 12 11 15 15 C 1.32208 * 120.08715 * 359.48962 * 14 13 12 16 16 C 1.38443 * 120.21090 * 0.51181 * 15 14 13 17 17 N 1.32005 * 120.13366 * 359.74492 * 16 15 14 18 18 C 1.40035 * 118.35852 * 359.51022 * 11 10 9 19 19 C 1.38542 * 119.41955 * 0.24768 * 18 11 10 20 20 N 1.31457 * 121.14411 * 0.02562 * 19 18 11 21 21 H 0.97008 * 120.00059 * 359.97438 * 1 2 3 22 22 H 1.07998 * 120.58203 * 0.02988 * 10 9 7 23 23 H 1.08002 * 120.05968 * 359.97438 * 13 12 11 24 24 H 1.07996 * 119.88861 * 180.23514 * 15 14 13 25 25 H 1.08001 * 119.92852 * 179.71948 * 16 15 14 26 26 H 1.07999 * 120.29151 * 180.26927 * 18 11 10 27 27 H 1.07992 * 119.42872 * 179.97438 * 19 18 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6964 -1.2126 5 1 1.2764 2.7464 0.0006 6 1 3.0952 1.6962 1.2125 7 6 2.0075 -1.2128 -0.0005 8 1 3.0875 -1.2129 -0.0010 9 6 1.3004 -2.4375 -0.0005 10 6 2.0076 -3.6516 0.0044 11 6 1.2914 -4.8463 -0.0010 12 6 1.9933 -6.1536 -0.0010 13 6 1.2654 -7.3386 -0.1057 14 7 1.8942 -8.4991 -0.0997 15 6 3.2123 -8.5383 -0.0049 16 6 3.9384 -7.3642 0.0992 17 7 3.3179 -6.1990 0.0992 18 6 -0.1076 -4.7831 -0.0005 19 6 -0.7330 -3.5469 0.0000 20 7 -0.0359 -2.4323 -0.0005 21 1 -0.4850 0.8401 0.0004 22 1 3.0876 -3.6584 0.0086 23 1 0.1889 -7.3068 -0.1865 24 1 3.7237 -9.4894 -0.0041 25 1 5.0147 -7.4017 0.1810 26 1 -0.6938 -5.6901 -0.0001 27 1 -1.8118 -3.4980 0.0000 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259653805.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:56 Heat of formation + Delta-G solvation = 59.547649 kcal Electronic energy + Delta-G solvation = -14199.224253 eV Core-core repulsion = 11728.172707 eV Total energy + Delta-G solvation = -2471.051545 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.075 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.97728 -39.92342 -35.78692 -35.26653 -33.92000 -31.96702 -30.82535 -27.76335 -25.93575 -25.40622 -23.06824 -22.66642 -19.48520 -18.41129 -18.03591 -17.50203 -16.61609 -16.16754 -15.86605 -15.76717 -15.46649 -14.50270 -14.15150 -14.04457 -13.62187 -12.88683 -12.88632 -12.73556 -12.56420 -12.35074 -12.17439 -11.77889 -11.34515 -10.92418 -10.05293 -9.63674 -9.54558 -9.46832 -8.32131 -6.54624 -0.47424 0.11836 0.87250 1.24475 1.40295 1.52895 1.54857 2.22518 2.73251 2.94069 3.04979 3.33697 3.54611 3.86883 3.91365 4.19297 4.26963 4.40398 4.50186 4.76918 4.83661 4.93955 5.18024 5.33731 5.44252 5.58651 5.77545 6.01565 6.23045 6.35902 6.67608 6.84247 6.91733 8.14164 8.42768 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.047921 B = 0.006468 C = 0.005712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.157900 B = 4327.969256 C = 4900.713420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.024 3.976 3 Si 0.988 3.012 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.259 1.259 7 C -0.468 4.468 8 H 0.086 0.914 9 C 0.221 3.779 10 C -0.246 4.246 11 C -0.005 4.005 12 C 0.112 3.888 13 C 0.055 3.945 14 N -0.452 5.452 15 C 0.046 3.954 16 C 0.054 3.946 17 N -0.467 5.467 18 C -0.287 4.287 19 C 0.107 3.893 20 N -0.516 5.516 21 H 0.281 0.719 22 H 0.106 0.894 23 H 0.185 0.815 24 H 0.215 0.785 25 H 0.207 0.793 26 H 0.140 0.860 27 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.503 -10.056 -0.003 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.375 5.375 2 C -0.198 4.198 3 Si 0.808 3.192 4 H -0.183 1.183 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.499 4.499 8 H 0.104 0.896 9 C 0.096 3.904 10 C -0.269 4.269 11 C -0.012 4.012 12 C -0.024 4.024 13 C -0.103 4.103 14 N -0.166 5.166 15 C -0.114 4.114 16 C -0.108 4.108 17 N -0.182 5.182 18 C -0.310 4.310 19 C -0.056 4.056 20 N -0.229 5.229 21 H 0.092 0.908 22 H 0.124 0.876 23 H 0.202 0.798 24 H 0.231 0.769 25 H 0.224 0.776 26 H 0.158 0.842 27 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 3.879 -9.110 0.002 9.901 hybrid contribution 0.668 0.010 0.008 0.668 sum 4.548 -9.100 0.010 10.173 Atomic orbital electron populations 1.70202 1.08824 1.29342 1.29178 1.26987 0.95790 1.04486 0.92488 0.85183 0.78645 0.75328 0.80071 1.18319 1.18959 1.18340 1.19968 0.94741 0.90517 1.44701 0.89557 1.18982 0.88926 0.92901 0.89604 1.21954 0.99258 0.92671 1.13054 1.18546 0.93418 0.90066 0.99198 1.20862 0.90411 0.94429 0.96727 1.23881 1.02594 0.87283 0.96575 1.68509 1.11306 1.27534 1.09227 1.24516 0.90186 1.01619 0.95124 1.24496 1.03691 0.87712 0.94897 1.68407 1.09610 1.30734 1.09494 1.21672 0.92776 0.99196 1.17389 1.22994 1.00216 0.88502 0.93932 1.68646 1.07556 1.28886 1.17856 0.90845 0.87611 0.79821 0.76888 0.77648 0.84212 0.83326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -41.01 11.46 21.84 0.25 -40.76 15 2 C 0.02 1.26 5.50 85.29 0.47 1.73 15 3 Si 0.99 38.57 29.56 68.60 2.03 40.60 15 4 H -0.26 -9.78 7.11 99.48 0.71 -9.08 15 5 H -0.27 -9.74 7.11 99.48 0.71 -9.03 15 6 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 7 C -0.47 -26.15 9.14 23.49 0.21 -25.93 15 8 H 0.09 4.55 7.85 -2.91 -0.02 4.53 15 9 C 0.22 12.59 6.55 40.20 0.26 12.85 15 10 C -0.25 -12.76 9.39 23.08 0.22 -12.54 15 11 C 0.00 -0.21 5.90 -19.88 -0.12 -0.33 15 12 C 0.11 4.29 6.73 41.98 0.28 4.57 15 13 C 0.06 1.75 10.63 84.96 0.90 2.65 15 14 N -0.45 -12.56 10.49 -194.34 -2.04 -14.60 15 15 C 0.05 0.99 11.22 84.68 0.95 1.94 15 16 C 0.05 1.33 11.22 84.72 0.95 2.28 15 17 N -0.47 -16.81 9.71 -184.24 -1.79 -18.60 15 18 C -0.29 -12.14 9.51 22.78 0.22 -11.93 15 19 C 0.11 5.08 11.17 84.82 0.95 6.03 15 20 N -0.52 -29.05 7.84 -189.35 -1.49 -30.53 15 21 H 0.28 13.75 8.29 -92.70 -0.77 12.98 15 22 H 0.11 5.43 7.65 -2.91 -0.02 5.41 15 23 H 0.18 5.04 6.32 -2.91 -0.02 5.03 15 24 H 0.21 2.39 8.06 -2.91 -0.02 2.36 15 25 H 0.21 3.17 8.06 -2.91 -0.02 3.14 15 26 H 0.14 4.67 6.35 -2.91 -0.02 4.65 15 27 H 0.15 6.02 8.06 -2.91 -0.02 6.00 15 Total: -1.00 -69.14 247.97 3.46 -65.68 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 1.20 Total: 16.89 kcal Atomic # 6 Polarization: -23.98 SS G_CDS: 5.30 Total: -18.68 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -5.06 Total: -104.49 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -69.14 3.46 -65.68 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259653805.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.230 kcal (2) G-P(sol) polarization free energy of solvation -69.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds