Wall clock time and date at job start Mon Mar 30 2020 02:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38234 * 119.98667 * 2 1 4 4 C 1.38183 * 120.05191 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.99082 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47186 * 145.00097 * 5 4 3 7 7 N 1.46906 * 109.46749 * 25.00106 * 5 4 3 8 8 C 1.50700 * 109.47455 * 265.00441 * 5 4 3 9 9 H 1.08004 * 119.99587 * 359.97438 * 8 5 4 10 10 C 1.37870 * 120.00411 * 179.97438 * 8 5 4 11 11 N 1.31512 * 119.99747 * 359.97438 * 10 8 5 12 12 Si 1.86797 * 120.00567 * 179.97438 * 10 8 5 13 13 H 1.48508 * 109.46856 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47260 * 119.99433 * 12 10 8 15 15 H 1.48495 * 109.47413 * 240.00133 * 12 10 8 16 16 C 1.38503 * 120.02384 * 0.04575 * 4 3 2 17 17 F 1.35092 * 120.01073 * 180.02562 * 16 4 3 18 18 C 1.38396 * 119.97368 * 359.94854 * 16 4 3 19 19 C 1.38445 * 119.94984 * 0.02877 * 18 16 4 20 20 F 1.35105 * 120.00979 * 180.02562 * 19 18 16 21 21 H 1.09005 * 109.47522 * 269.98044 * 1 2 3 22 22 H 1.09003 * 109.47314 * 29.97944 * 1 2 3 23 23 H 1.09004 * 109.46979 * 149.98385 * 1 2 3 24 24 H 1.08006 * 119.97176 * 0.02562 * 3 2 1 25 25 H 1.00896 * 110.99837 * 176.04778 * 7 5 4 26 26 H 1.00895 * 111.00209 * 299.99767 * 7 5 4 27 27 H 0.97010 * 120.00615 * 179.97438 * 11 10 8 28 28 H 1.07997 * 120.02557 * 180.29670 * 18 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1979 1.1973 0.0000 4 6 3.5797 1.1989 0.0005 5 6 4.3315 2.5049 0.0000 6 1 5.2420 2.4003 0.5898 7 7 3.4876 3.5559 0.5843 8 6 4.6899 2.8777 -1.4156 9 1 4.4024 2.2330 -2.2330 10 6 5.3848 4.0416 -1.6671 11 7 5.7344 4.8268 -0.6718 12 14 5.8297 4.5033 -3.4216 13 1 5.3247 3.4609 -4.3510 14 1 5.2116 5.8101 -3.7615 15 1 7.3057 4.6062 -3.5473 16 6 4.2741 0.0005 0.0001 17 9 5.6250 0.0023 0.0012 18 6 3.5834 -1.1988 0.0002 19 6 2.1989 -1.1991 0.0002 20 9 1.5235 -2.3692 0.0008 21 1 -0.3634 -0.0004 1.0277 22 1 -0.3634 0.8902 -0.5135 23 1 -0.3633 -0.8899 -0.5141 24 1 1.6571 2.1323 0.0004 25 1 3.9917 4.4271 0.6545 26 1 2.6365 3.6723 0.0550 27 1 6.2236 5.6457 -0.8486 28 1 4.1240 -2.1337 0.0047 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259932962.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:54 Heat of formation + Delta-G solvation = -95.355059 kcal Electronic energy + Delta-G solvation = -15479.624762 eV Core-core repulsion = 12551.166945 eV Total energy + Delta-G solvation = -2928.457817 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.92889 -49.83387 -40.11314 -36.67404 -33.72905 -33.31601 -30.73495 -28.26150 -27.36985 -25.01483 -23.23560 -21.45392 -19.14140 -18.68088 -18.27873 -17.07759 -16.90523 -16.36713 -16.22032 -16.08637 -15.55490 -15.29081 -14.80889 -14.30018 -14.16107 -13.95209 -13.43985 -13.24432 -12.93497 -12.82076 -12.67055 -12.35922 -12.15791 -11.88759 -11.61379 -10.76719 -9.84100 -9.43400 -9.18045 -8.16489 -6.42542 0.08155 0.14891 1.35169 1.38727 1.49425 2.32103 2.51936 2.97950 3.01442 3.56837 3.72336 3.82168 3.93899 4.21963 4.58938 4.64776 4.83456 4.85889 4.94128 4.99860 5.15233 5.27270 5.38027 5.60130 5.65305 5.89679 5.99627 6.58254 6.84074 7.07796 7.33865 8.78819 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.034070 B = 0.008210 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.640928 B = 3409.525962 C = 3619.085786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.122 4.122 3 C -0.061 4.061 4 C -0.093 4.093 5 C 0.247 3.753 6 H 0.011 0.989 7 N -0.838 5.838 8 C -0.560 4.560 9 H 0.046 0.954 10 C 0.025 3.975 11 N -0.913 5.913 12 Si 0.960 3.040 13 H -0.273 1.273 14 H -0.272 1.272 15 H -0.281 1.281 16 C 0.091 3.909 17 F -0.145 7.145 18 C -0.183 4.183 19 C 0.097 3.903 20 F -0.132 7.132 21 H 0.088 0.912 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.151 0.849 25 H 0.348 0.652 26 H 0.323 0.677 27 H 0.269 0.731 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.954 -8.003 0.378 12.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.123 4.123 3 C -0.079 4.079 4 C -0.094 4.094 5 C 0.137 3.863 6 H 0.029 0.971 7 N -0.368 5.368 8 C -0.600 4.600 9 H 0.064 0.936 10 C -0.176 4.176 11 N -0.552 5.552 12 Si 0.786 3.214 13 H -0.198 1.198 14 H -0.198 1.198 15 H -0.207 1.207 16 C 0.071 3.929 17 F -0.124 7.124 18 C -0.202 4.202 19 C 0.078 3.922 20 F -0.111 7.111 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.095 0.905 24 H 0.169 0.831 25 H 0.163 0.837 26 H 0.134 0.866 27 H 0.079 0.921 28 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -8.856 -8.346 1.088 12.217 hybrid contribution 1.228 0.663 -1.696 2.196 sum -7.628 -7.684 -0.608 10.844 Atomic orbital electron populations 1.20776 0.87345 1.04272 1.03937 1.20264 0.98948 0.90724 1.02335 1.20729 0.91719 0.98305 0.97191 1.20545 0.95585 0.94885 0.98409 1.17619 0.90254 0.85947 0.92499 0.97077 1.59497 1.08996 1.12785 1.55499 1.21957 1.37502 1.06926 0.93567 0.93561 1.25715 0.94489 0.96138 1.01217 1.69834 1.39491 1.13581 1.32343 0.85476 0.77884 0.78168 0.79902 1.19773 1.19778 1.20695 1.17419 0.76865 0.93985 1.04635 1.91442 1.29604 1.97369 1.93982 1.20998 0.93619 0.98174 1.07438 1.17006 0.88746 0.81384 1.05051 1.91466 1.79825 1.45635 1.94124 0.89371 0.89513 0.90521 0.83143 0.83660 0.86627 0.92123 0.82136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.27 9.83 71.23 0.70 -1.57 15 2 C -0.12 -3.62 5.89 -19.82 -0.12 -3.74 15 3 C -0.06 -2.16 8.92 22.26 0.20 -1.96 15 4 C -0.09 -3.99 5.00 -19.81 -0.10 -4.09 15 5 C 0.25 12.49 2.72 43.42 0.12 12.61 15 6 H 0.01 0.66 7.79 -2.39 -0.02 0.64 15 7 N -0.84 -38.72 8.79 -174.95 -1.54 -40.26 15 8 C -0.56 -30.31 8.71 25.60 0.22 -30.08 15 9 H 0.05 2.54 7.74 -2.91 -0.02 2.52 15 10 C 0.03 1.34 5.38 84.65 0.46 1.80 15 11 N -0.91 -50.15 11.53 21.44 0.25 -49.90 15 12 Si 0.96 42.64 29.54 68.60 2.03 44.67 15 13 H -0.27 -12.06 7.11 99.48 0.71 -11.35 15 14 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 15 H -0.28 -12.40 7.11 99.48 0.71 -11.70 15 16 C 0.09 3.73 7.24 22.37 0.16 3.89 15 17 F -0.15 -6.51 16.57 44.97 0.74 -5.76 15 18 C -0.18 -6.11 10.01 22.36 0.22 -5.88 15 19 C 0.10 3.00 7.24 22.37 0.16 3.16 15 20 F -0.13 -3.68 16.48 44.97 0.74 -2.94 15 21 H 0.09 1.62 8.14 -2.38 -0.02 1.60 15 22 H 0.09 1.61 8.09 -2.39 -0.02 1.59 15 23 H 0.08 1.48 7.64 -2.39 -0.02 1.46 15 24 H 0.15 4.90 6.29 -2.91 -0.02 4.89 15 25 H 0.35 17.47 7.08 -89.70 -0.63 16.83 15 26 H 0.32 13.52 7.20 -89.70 -0.65 12.88 15 27 H 0.27 13.98 8.31 -92.70 -0.77 13.21 15 28 H 0.16 4.49 8.06 -2.91 -0.02 4.47 15 Total: -1.00 -58.08 251.49 4.18 -53.90 By element: Atomic # 1 Polarization: 26.23 SS G_CDS: -0.07 Total: 26.16 kcal Atomic # 6 Polarization: -27.89 SS G_CDS: 2.03 Total: -25.86 kcal Atomic # 7 Polarization: -88.87 SS G_CDS: -1.29 Total: -90.16 kcal Atomic # 9 Polarization: -10.19 SS G_CDS: 1.49 Total: -8.70 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -58.08 4.18 -53.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259932962.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.455 kcal (2) G-P(sol) polarization free energy of solvation -58.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds