Wall clock time and date at job start Mon Mar 30 2020 02:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38438 * 120.02415 * 2 1 4 4 F 1.35104 * 120.01364 * 359.95953 * 3 2 1 5 5 C 1.38454 * 119.97743 * 180.23125 * 3 2 1 6 6 C 1.38238 * 120.02050 * 359.51637 * 5 3 2 7 7 C 1.38182 * 120.04926 * 0.46598 * 6 5 3 8 8 C 1.50699 * 119.98711 * 179.76735 * 7 6 5 9 9 H 1.09003 * 109.47232 * 145.01982 * 8 7 6 10 10 N 1.46909 * 109.47252 * 25.02059 * 8 7 6 11 11 C 1.50704 * 109.47280 * 265.02087 * 8 7 6 12 12 H 1.08003 * 119.99566 * 0.02562 * 11 8 7 13 13 C 1.37868 * 119.99967 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00768 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 119.99731 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47164 * 60.00171 * 15 13 11 17 17 H 1.48508 * 109.46984 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47147 * 299.99952 * 15 13 11 19 19 C 1.38397 * 120.02636 * 179.97438 * 2 1 3 20 20 F 1.35095 * 120.01416 * 0.04106 * 19 2 1 21 21 H 1.08996 * 109.47195 * 89.99920 * 1 2 3 22 22 H 1.09009 * 109.46899 * 209.99771 * 1 2 3 23 23 H 1.09003 * 109.47018 * 329.99751 * 1 2 3 24 24 H 1.07998 * 119.99346 * 179.75177 * 5 3 2 25 25 H 1.08005 * 119.97346 * 180.25555 * 6 5 3 26 26 H 1.00891 * 110.99916 * 176.04753 * 10 8 7 27 27 H 1.00901 * 110.99434 * 300.00522 * 10 8 7 28 28 H 0.96992 * 120.00920 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1986 0.0000 4 9 1.5249 2.3691 -0.0008 5 6 3.5842 1.1975 -0.0048 6 6 4.2749 0.0000 0.0004 7 6 3.5845 -1.1970 0.0008 8 6 4.3388 -2.5016 0.0013 9 1 3.7918 -3.2374 0.5906 10 7 5.6705 -2.2971 0.5870 11 6 4.4836 -2.9987 -1.4141 12 1 4.0710 -2.4268 -2.2321 13 6 5.1436 -4.1829 -1.6646 14 7 5.6466 -4.8790 -0.6686 15 14 5.3224 -4.7993 -3.4189 16 1 6.0668 -3.7967 -4.2225 17 1 6.0659 -6.0849 -3.4185 18 1 3.9761 -5.0069 -4.0103 19 6 2.1995 -1.1982 0.0005 20 9 1.5249 -2.3687 0.0002 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 4.1248 2.1324 -0.0089 25 1 5.3549 0.0001 0.0008 26 1 6.1722 -3.1695 0.6578 27 1 6.1977 -1.6185 0.0582 28 1 6.1106 -5.7123 -0.8448 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259936127.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:24 Heat of formation + Delta-G solvation = -78.284116 kcal Electronic energy + Delta-G solvation = -15541.974106 eV Core-core repulsion = 12614.256540 eV Total energy + Delta-G solvation = -2927.717565 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.61219 -48.24366 -38.54700 -34.93115 -32.42886 -31.24108 -29.22167 -26.58064 -25.99764 -23.09308 -21.85787 -19.79728 -17.64396 -16.86948 -16.64102 -15.56748 -15.39685 -15.11063 -14.68188 -14.41521 -13.91161 -13.50925 -12.92584 -12.88555 -12.63296 -12.45425 -12.26855 -11.58047 -11.48913 -11.06253 -10.92785 -10.79572 -10.62261 -10.08680 -9.77941 -8.74210 -8.29616 -7.94719 -7.31525 -6.16542 -4.33391 1.53368 1.59154 3.21014 3.26124 3.29340 3.95159 4.29709 4.41108 4.96444 4.96620 5.06439 5.11746 5.48288 5.69213 5.74247 5.84068 6.03060 6.29084 6.33782 6.46089 6.59464 6.78575 6.85386 7.32965 7.54627 7.66748 7.96127 8.55560 8.80945 8.99361 9.38177 10.81995 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.035657 B = 0.008266 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.070468 B = 3386.506518 C = 3602.511643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.163 4.163 3 C 0.091 3.909 4 F -0.144 7.144 5 C -0.163 4.163 6 C -0.065 4.065 7 C -0.065 4.065 8 C 0.242 3.758 9 H 0.055 0.945 10 N -0.849 5.849 11 C -0.546 4.546 12 H 0.056 0.944 13 C 0.069 3.931 14 N -0.892 5.892 15 Si 0.900 3.100 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.121 3.879 20 F -0.127 7.127 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.068 0.932 24 H 0.132 0.868 25 H 0.141 0.859 26 H 0.359 0.641 27 H 0.312 0.688 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.588 8.710 1.002 9.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.165 4.165 3 C 0.072 3.928 4 F -0.122 7.122 5 C -0.182 4.182 6 C -0.083 4.083 7 C -0.067 4.067 8 C 0.132 3.868 9 H 0.073 0.927 10 N -0.380 5.380 11 C -0.586 4.586 12 H 0.074 0.926 13 C -0.134 4.134 14 N -0.530 5.530 15 Si 0.727 3.273 16 H -0.201 1.201 17 H -0.211 1.211 18 H -0.201 1.201 19 C 0.101 3.899 20 F -0.105 7.105 21 H 0.090 0.910 22 H 0.090 0.910 23 H 0.087 0.913 24 H 0.150 0.850 25 H 0.159 0.841 26 H 0.176 0.824 27 H 0.122 0.878 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.938 8.760 1.715 10.201 hybrid contribution 0.227 -0.779 -1.963 2.124 sum -4.711 7.981 -0.249 9.271 Atomic orbital electron populations 1.20569 0.90000 1.03107 1.02677 1.19701 0.97235 0.91279 1.08265 1.17015 0.89738 0.80081 1.05962 1.91428 1.80629 1.45841 1.94330 1.21094 0.91864 0.99784 1.05446 1.20712 1.00729 0.89779 0.97080 1.20691 0.91501 0.98861 0.95611 1.17907 0.87904 0.86807 0.94144 0.92727 1.59562 1.06197 1.16643 1.55587 1.21682 1.37048 1.07071 0.92765 0.92602 1.24993 0.94892 0.95855 0.97657 1.69716 1.36990 1.15490 1.30854 0.86527 0.78438 0.78047 0.84285 1.20126 1.21073 1.20055 1.17046 0.89529 0.80298 1.02991 1.91475 1.79956 1.45555 1.93528 0.91045 0.90965 0.91285 0.85039 0.84140 0.82426 0.87836 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 9.66 36.00 0.35 -1.19 15 2 C -0.16 -2.87 5.89 -104.49 -0.62 -3.49 15 3 C 0.09 1.53 7.24 -39.43 -0.29 1.25 15 4 F -0.14 -2.26 16.48 2.25 0.04 -2.22 15 5 C -0.16 -2.63 10.03 -39.50 -0.40 -3.02 15 6 C -0.06 -1.18 9.27 -39.60 -0.37 -1.55 15 7 C -0.06 -1.39 5.00 -104.55 -0.52 -1.91 15 8 C 0.24 5.95 2.72 -70.01 -0.19 5.76 15 9 H 0.05 1.51 7.79 -51.93 -0.40 1.10 15 10 N -0.85 -19.39 8.79 -6.64 -0.06 -19.44 15 11 C -0.55 -14.50 8.71 -34.44 -0.30 -14.80 15 12 H 0.06 1.50 7.74 -52.48 -0.41 1.10 15 13 C 0.07 1.83 5.38 -17.82 -0.10 1.74 15 14 N -0.89 -24.16 11.54 55.43 0.64 -23.52 15 15 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 15 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 15 18 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 19 C 0.12 2.48 7.18 -39.43 -0.28 2.20 15 20 F -0.13 -2.73 15.78 2.25 0.04 -2.70 15 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 15 22 H 0.07 1.00 7.64 -51.92 -0.40 0.61 15 23 H 0.07 0.88 7.64 -51.93 -0.40 0.49 15 24 H 0.13 1.73 8.06 -52.49 -0.42 1.30 15 25 H 0.14 2.38 6.29 -52.48 -0.33 2.05 15 26 H 0.36 8.83 7.08 -39.30 -0.28 8.55 15 27 H 0.31 6.57 7.20 -39.29 -0.28 6.29 15 28 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 LS Contribution 250.39 15.07 3.77 3.77 Total: -1.00 -26.97 250.39 -5.78 -32.75 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -2.48 Total: 10.66 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -2.71 Total: -15.02 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.58 Total: -42.96 kcal Atomic # 9 Polarization: -4.99 SS G_CDS: 0.07 Total: -4.92 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -26.97 -5.78 -32.75 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936127.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.537 kcal (2) G-P(sol) polarization free energy of solvation -26.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds