Wall clock time and date at job start Mon Mar 30 2020 02:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38438 * 120.02415 * 2 1 4 4 F 1.35104 * 120.01364 * 359.95953 * 3 2 1 5 5 C 1.38454 * 119.97743 * 180.23125 * 3 2 1 6 6 C 1.38238 * 120.02050 * 359.51637 * 5 3 2 7 7 C 1.38182 * 120.04926 * 0.46598 * 6 5 3 8 8 C 1.50699 * 119.98711 * 179.76735 * 7 6 5 9 9 H 1.09003 * 109.47232 * 145.01982 * 8 7 6 10 10 N 1.46909 * 109.47252 * 25.02059 * 8 7 6 11 11 C 1.50704 * 109.47280 * 265.02087 * 8 7 6 12 12 H 1.08003 * 119.99566 * 0.02562 * 11 8 7 13 13 C 1.37868 * 119.99967 * 179.97438 * 11 8 7 14 14 N 1.31514 * 120.00768 * 0.02562 * 13 11 8 15 15 Si 1.86802 * 119.99731 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47164 * 60.00171 * 15 13 11 17 17 H 1.48508 * 109.46984 * 180.02562 * 15 13 11 18 18 H 1.48506 * 109.47147 * 299.99952 * 15 13 11 19 19 C 1.38397 * 120.02636 * 179.97438 * 2 1 3 20 20 F 1.35095 * 120.01416 * 0.04106 * 19 2 1 21 21 H 1.08996 * 109.47195 * 89.99920 * 1 2 3 22 22 H 1.09009 * 109.46899 * 209.99771 * 1 2 3 23 23 H 1.09003 * 109.47018 * 329.99751 * 1 2 3 24 24 H 1.07998 * 119.99346 * 179.75177 * 5 3 2 25 25 H 1.08005 * 119.97346 * 180.25555 * 6 5 3 26 26 H 1.00891 * 110.99916 * 176.04753 * 10 8 7 27 27 H 1.00901 * 110.99434 * 300.00522 * 10 8 7 28 28 H 0.96992 * 120.00920 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1997 1.1986 0.0000 4 9 1.5249 2.3691 -0.0008 5 6 3.5842 1.1975 -0.0048 6 6 4.2749 0.0000 0.0004 7 6 3.5845 -1.1970 0.0008 8 6 4.3388 -2.5016 0.0013 9 1 3.7918 -3.2374 0.5906 10 7 5.6705 -2.2971 0.5870 11 6 4.4836 -2.9987 -1.4141 12 1 4.0710 -2.4268 -2.2321 13 6 5.1436 -4.1829 -1.6646 14 7 5.6466 -4.8790 -0.6686 15 14 5.3224 -4.7993 -3.4189 16 1 6.0668 -3.7967 -4.2225 17 1 6.0659 -6.0849 -3.4185 18 1 3.9761 -5.0069 -4.0103 19 6 2.1995 -1.1982 0.0005 20 9 1.5249 -2.3687 0.0002 21 1 -0.3633 0.0000 -1.0276 22 1 -0.3633 -0.8901 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 4.1248 2.1324 -0.0089 25 1 5.3549 0.0001 0.0008 26 1 6.1722 -3.1695 0.6578 27 1 6.1977 -1.6185 0.0582 28 1 6.1106 -5.7123 -0.8448 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259936127.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:23 Heat of formation + Delta-G solvation = -94.469198 kcal Electronic energy + Delta-G solvation = -15542.675943 eV Core-core repulsion = 12614.256540 eV Total energy + Delta-G solvation = -2928.419403 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.91153 -49.84476 -40.02328 -36.72522 -34.04718 -32.91608 -30.81292 -28.00992 -27.82614 -24.81811 -23.27759 -21.41909 -19.09474 -18.66228 -18.32344 -17.13740 -16.97131 -16.51817 -16.27572 -16.15627 -15.34431 -15.03889 -14.74919 -14.29001 -14.09804 -13.97120 -13.57087 -13.35030 -13.02586 -12.82732 -12.64505 -12.48775 -12.10403 -11.93026 -11.60488 -10.75702 -9.68910 -9.50778 -9.20697 -8.16079 -6.42328 0.11775 0.14119 1.37441 1.38973 1.46842 2.32582 2.54449 2.99691 3.01886 3.56850 3.67146 3.78525 4.00351 4.31561 4.47464 4.64130 4.67874 4.77177 4.97754 5.03837 5.16537 5.19981 5.31570 5.59711 5.65929 5.90949 6.00196 6.58244 6.84173 7.07966 7.33991 8.78911 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.035657 B = 0.008266 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.070468 B = 3386.506518 C = 3602.511643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.160 4.160 3 C 0.097 3.903 4 F -0.132 7.132 5 C -0.145 4.145 6 C -0.066 4.066 7 C -0.094 4.094 8 C 0.248 3.752 9 H 0.010 0.990 10 N -0.839 5.839 11 C -0.562 4.562 12 H 0.046 0.954 13 C 0.026 3.974 14 N -0.913 5.913 15 Si 0.959 3.041 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.278 1.278 19 C 0.094 3.906 20 F -0.143 7.143 21 H 0.083 0.917 22 H 0.071 0.929 23 H 0.089 0.911 24 H 0.171 0.829 25 H 0.152 0.848 26 H 0.348 0.652 27 H 0.323 0.677 28 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.698 10.612 0.297 11.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.162 4.162 3 C 0.077 3.923 4 F -0.111 7.111 5 C -0.163 4.163 6 C -0.085 4.085 7 C -0.096 4.096 8 C 0.138 3.862 9 H 0.028 0.972 10 N -0.368 5.368 11 C -0.601 4.601 12 H 0.065 0.935 13 C -0.175 4.175 14 N -0.552 5.552 15 Si 0.785 3.215 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.204 1.204 19 C 0.074 3.926 20 F -0.122 7.122 21 H 0.102 0.898 22 H 0.090 0.910 23 H 0.108 0.892 24 H 0.188 0.812 25 H 0.169 0.831 26 H 0.163 0.837 27 H 0.134 0.866 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.050 10.685 1.013 11.862 hybrid contribution 0.220 -1.287 -1.705 2.147 sum -4.830 9.398 -0.692 10.589 Atomic orbital electron populations 1.20674 0.87825 1.04139 1.03760 1.19964 0.98918 0.90487 1.06785 1.17079 0.90099 0.80092 1.04988 1.91466 1.80455 1.45011 1.94118 1.21412 0.91717 1.00373 1.02822 1.20829 1.01302 0.89444 0.96885 1.20552 0.92030 0.98478 0.98529 1.17604 0.88348 0.87855 0.92427 0.97200 1.59498 1.05664 1.16167 1.55501 1.21907 1.37146 1.07504 0.93583 0.93540 1.25714 0.94609 0.95985 1.01213 1.69816 1.37289 1.15689 1.32443 0.85594 0.78142 0.77783 0.80025 1.19242 1.20443 1.20395 1.17308 0.89557 0.80833 1.04925 1.91422 1.80173 1.46664 1.93918 0.89829 0.90969 0.89243 0.81159 0.83058 0.83680 0.86589 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.87 9.66 71.24 0.69 -2.18 15 2 C -0.16 -5.37 5.89 -19.78 -0.12 -5.49 15 3 C 0.10 2.95 7.24 22.37 0.16 3.11 15 4 F -0.13 -3.63 16.48 44.97 0.74 -2.89 15 5 C -0.14 -4.18 10.03 22.32 0.22 -3.95 15 6 C -0.07 -2.32 9.27 22.26 0.21 -2.11 15 7 C -0.09 -4.06 5.00 -19.82 -0.10 -4.16 15 8 C 0.25 12.55 2.72 43.42 0.12 12.67 15 9 H 0.01 0.59 7.79 -2.39 -0.02 0.57 15 10 N -0.84 -38.85 8.79 -174.93 -1.54 -40.38 15 11 C -0.56 -30.42 8.71 25.60 0.22 -30.20 15 12 H 0.05 2.54 7.74 -2.91 -0.02 2.52 15 13 C 0.03 1.37 5.38 84.65 0.46 1.83 15 14 N -0.91 -50.27 11.54 21.44 0.25 -50.02 15 15 Si 0.96 42.61 29.54 68.60 2.03 44.64 15 16 H -0.27 -11.45 7.11 99.48 0.71 -10.75 15 17 H -0.28 -12.05 7.11 99.48 0.71 -11.34 15 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 15 19 C 0.09 3.85 7.18 22.37 0.16 4.01 15 20 F -0.14 -6.40 15.78 44.97 0.71 -5.69 15 21 H 0.08 2.04 8.14 -2.39 -0.02 2.02 15 22 H 0.07 1.93 7.64 -2.38 -0.02 1.91 15 23 H 0.09 2.01 7.64 -2.39 -0.02 1.99 15 24 H 0.17 3.60 8.06 -2.91 -0.02 3.58 15 25 H 0.15 4.85 6.29 -2.91 -0.02 4.83 15 26 H 0.35 17.50 7.08 -89.70 -0.63 16.87 15 27 H 0.32 13.56 7.20 -89.69 -0.65 12.91 15 28 H 0.27 14.10 8.31 -92.71 -0.77 13.33 15 Total: -1.00 -58.23 250.39 4.14 -54.09 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -0.07 Total: 26.73 kcal Atomic # 6 Polarization: -28.50 SS G_CDS: 2.02 Total: -26.48 kcal Atomic # 7 Polarization: -89.12 SS G_CDS: -1.29 Total: -90.41 kcal Atomic # 9 Polarization: -10.02 SS G_CDS: 1.45 Total: -8.57 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -58.23 4.14 -54.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259936127.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.383 kcal (2) G-P(sol) polarization free energy of solvation -58.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds