Wall clock time and date at job start Mon Mar 30 2020 02:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00264 * 2 1 4 4 H 1.48504 * 109.47450 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46972 * 299.99540 * 3 2 1 6 6 H 1.48498 * 109.47502 * 59.99934 * 3 2 1 7 7 C 1.37879 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99614 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00177 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47522 * 59.99626 * 9 7 2 11 11 N 1.46896 * 109.47138 * 299.99524 * 9 7 2 12 12 C 1.50706 * 109.47242 * 180.02562 * 9 7 2 13 13 C 1.38263 * 119.98938 * 99.72271 * 12 9 7 14 14 C 1.38220 * 120.05225 * 179.77105 * 13 12 9 15 15 C 1.38223 * 120.02333 * 0.50350 * 14 13 12 16 16 C 1.38437 * 119.97603 * 359.74968 * 15 14 13 17 17 F 1.35097 * 120.02857 * 179.97438 * 16 15 14 18 18 C 1.38178 * 119.98297 * 279.99618 * 12 9 7 19 19 C 1.50699 * 120.01236 * 0.02562 * 18 12 9 20 20 F 1.39908 * 109.46972 * 90.00198 * 19 18 12 21 21 H 0.96999 * 119.99681 * 0.02562 * 1 2 3 22 22 H 1.00902 * 111.00660 * 176.04422 * 11 9 7 23 23 H 1.00901 * 111.00259 * 300.00304 * 11 9 7 24 24 H 1.08000 * 119.97295 * 0.02562 * 13 12 9 25 25 H 1.08002 * 119.99202 * 180.25511 * 14 13 12 26 26 H 1.08003 * 120.01312 * 179.73094 * 15 14 13 27 27 H 1.09001 * 109.47119 * 209.99508 * 19 18 12 28 28 H 1.08996 * 109.47258 * 329.99677 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6245 -2.5571 -0.8896 11 7 0.4060 -2.5767 1.1997 12 6 2.2302 -3.6447 0.0018 13 6 2.5246 -4.3009 1.1826 14 6 3.4189 -5.3547 1.1845 15 6 4.0279 -5.7471 0.0073 16 6 3.7379 -5.0874 -1.1747 17 9 4.3329 -5.4697 -2.3258 18 6 2.8377 -4.0351 -1.1762 19 6 2.5216 -3.3153 -2.4619 20 9 3.4114 -2.2488 -2.6301 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1581 -3.4133 1.1912 23 1 0.9637 -2.5251 2.0390 24 1 2.0523 -3.9924 2.1036 25 1 3.6451 -5.8693 2.1068 26 1 4.7300 -6.5678 0.0097 27 1 2.6205 -4.0064 -3.2990 28 1 1.5010 -2.9345 -2.4237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259939097.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:56 Heat of formation + Delta-G solvation = -69.620714 kcal Electronic energy + Delta-G solvation = -15768.338244 eV Core-core repulsion = 12840.996352 eV Total energy + Delta-G solvation = -2927.341892 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.64176 -46.78443 -38.92201 -34.64449 -31.90184 -31.60132 -29.07113 -26.24740 -25.84659 -23.21877 -21.19597 -20.15178 -16.89215 -16.62214 -16.37911 -15.71680 -15.52524 -14.79354 -14.55414 -14.48329 -14.31035 -14.02238 -13.24345 -13.05281 -12.33668 -12.08680 -11.86007 -11.39417 -11.23548 -10.85637 -10.63364 -10.36173 -10.26061 -9.76196 -9.33003 -8.50153 -8.42249 -8.11450 -7.24100 -5.91687 -4.05928 1.49660 1.67119 3.34209 3.42287 3.48474 3.97691 4.50136 4.57683 4.94384 5.06502 5.24276 5.32972 5.50273 5.57383 5.74452 5.85983 6.15118 6.19580 6.37137 6.46161 6.47905 6.75359 6.80331 7.30468 7.32337 7.89718 8.07625 8.52426 8.88840 9.07927 9.63422 11.12735 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.030039 B = 0.010261 C = 0.008720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.901484 B = 2728.048737 C = 3210.295296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.085 3.915 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.523 4.523 8 H 0.057 0.943 9 C 0.250 3.750 10 H 0.055 0.945 11 N -0.809 5.809 12 C -0.024 4.024 13 C -0.146 4.146 14 C -0.083 4.083 15 C -0.185 4.185 16 C 0.112 3.888 17 F -0.145 7.145 18 C -0.168 4.168 19 C 0.117 3.883 20 F -0.201 7.201 21 H 0.256 0.744 22 H 0.300 0.700 23 H 0.320 0.680 24 H 0.126 0.874 25 H 0.125 0.875 26 H 0.127 0.873 27 H 0.066 0.934 28 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.978 -9.774 -0.121 10.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.121 4.121 3 Si 0.713 3.287 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.562 4.562 8 H 0.075 0.925 9 C 0.140 3.860 10 H 0.072 0.928 11 N -0.336 5.336 12 C -0.027 4.027 13 C -0.165 4.165 14 C -0.102 4.102 15 C -0.204 4.204 16 C 0.093 3.907 17 F -0.123 7.123 18 C -0.170 4.170 19 C 0.063 3.937 20 F -0.182 7.182 21 H 0.066 0.934 22 H 0.111 0.889 23 H 0.134 0.866 24 H 0.144 0.856 25 H 0.143 0.857 26 H 0.145 0.855 27 H 0.085 0.915 28 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.493 -8.951 -0.436 9.618 hybrid contribution 1.298 -0.063 0.111 1.305 sum 4.792 -9.014 -0.325 10.214 Atomic orbital electron populations 1.70104 1.05669 1.25758 1.46780 1.24903 0.94632 0.98609 0.93992 0.86654 0.80471 0.84095 0.77456 1.19753 1.20993 1.21105 1.20756 0.92354 0.88733 1.54352 0.92507 1.18371 0.87469 0.88876 0.91301 0.92790 1.59143 1.27981 1.42146 1.04333 1.21717 0.95452 0.94984 0.90556 1.21103 1.00015 0.96804 0.98551 1.20936 0.95732 0.96523 0.96971 1.20871 1.04591 1.03072 0.91866 1.17626 0.95047 0.96254 0.81812 1.91438 1.82232 1.90549 1.48128 1.20161 1.00902 0.98003 0.97910 1.20510 0.94048 0.85707 0.93481 1.92810 1.70693 1.58421 1.96289 0.93434 0.88944 0.86635 0.85579 0.85744 0.85544 0.91538 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.03 12.77 55.43 0.71 -23.33 15 2 C 0.09 2.34 5.39 -17.82 -0.10 2.24 15 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 15 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 15 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 15 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 15 7 C -0.52 -13.96 8.44 -34.44 -0.29 -14.25 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.25 5.83 2.30 -70.02 -0.16 5.67 15 10 H 0.05 1.37 6.41 -51.93 -0.33 1.03 15 11 N -0.81 -17.74 8.02 -6.65 -0.05 -17.80 15 12 C -0.02 -0.49 5.01 -104.63 -0.52 -1.01 15 13 C -0.15 -2.53 9.25 -39.58 -0.37 -2.90 15 14 C -0.08 -1.24 10.04 -39.59 -0.40 -1.64 15 15 C -0.19 -2.85 10.03 -39.51 -0.40 -3.25 15 16 C 0.11 1.99 7.24 -39.42 -0.29 1.70 15 17 F -0.14 -2.51 16.48 2.25 0.04 -2.47 15 18 C -0.17 -3.28 5.60 -104.55 -0.59 -3.86 15 19 C 0.12 2.25 6.89 36.01 0.25 2.50 15 20 F -0.20 -4.46 17.31 2.25 0.04 -4.43 15 21 H 0.26 6.96 8.31 -40.82 -0.34 6.62 15 22 H 0.30 5.76 9.06 -39.29 -0.36 5.41 15 23 H 0.32 6.65 7.27 -39.29 -0.29 6.36 15 24 H 0.13 2.01 6.24 -52.49 -0.33 1.69 15 25 H 0.12 1.43 8.06 -52.49 -0.42 1.01 15 26 H 0.13 1.60 8.06 -52.48 -0.42 1.17 15 27 H 0.07 1.08 7.64 -51.93 -0.40 0.68 15 28 H 0.09 1.84 6.12 -51.93 -0.32 1.53 15 LS Contribution 250.54 15.07 3.78 3.78 Total: -1.00 -29.30 250.54 -5.77 -35.08 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -2.40 Total: 7.49 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -2.85 Total: -14.80 kcal Atomic # 7 Polarization: -41.78 SS G_CDS: 0.65 Total: -41.12 kcal Atomic # 9 Polarization: -6.97 SS G_CDS: 0.08 Total: -6.89 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.30 -5.77 -35.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939097.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.543 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds