Wall clock time and date at job start Mon Mar 30 2020 02:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86796 * 120.00264 * 2 1 4 4 H 1.48504 * 109.47450 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46972 * 299.99540 * 3 2 1 6 6 H 1.48498 * 109.47502 * 59.99934 * 3 2 1 7 7 C 1.37879 * 119.99624 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99614 * 180.02562 * 7 2 1 9 9 C 1.50695 * 120.00177 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47522 * 59.99626 * 9 7 2 11 11 N 1.46896 * 109.47138 * 299.99524 * 9 7 2 12 12 C 1.50706 * 109.47242 * 180.02562 * 9 7 2 13 13 C 1.38263 * 119.98938 * 99.72271 * 12 9 7 14 14 C 1.38220 * 120.05225 * 179.77105 * 13 12 9 15 15 C 1.38223 * 120.02333 * 0.50350 * 14 13 12 16 16 C 1.38437 * 119.97603 * 359.74968 * 15 14 13 17 17 F 1.35097 * 120.02857 * 179.97438 * 16 15 14 18 18 C 1.38178 * 119.98297 * 279.99618 * 12 9 7 19 19 C 1.50699 * 120.01236 * 0.02562 * 18 12 9 20 20 F 1.39908 * 109.46972 * 90.00198 * 19 18 12 21 21 H 0.96999 * 119.99681 * 0.02562 * 1 2 3 22 22 H 1.00902 * 111.00660 * 176.04422 * 11 9 7 23 23 H 1.00901 * 111.00259 * 300.00304 * 11 9 7 24 24 H 1.08000 * 119.97295 * 0.02562 * 13 12 9 25 25 H 1.08002 * 119.99202 * 180.25511 * 14 13 12 26 26 H 1.08003 * 120.01312 * 179.73094 * 15 14 13 27 27 H 1.09001 * 109.47119 * 209.99508 * 19 18 12 28 28 H 1.08996 * 109.47258 * 329.99677 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 1 0.6245 -2.5571 -0.8896 11 7 0.4060 -2.5767 1.1997 12 6 2.2302 -3.6447 0.0018 13 6 2.5246 -4.3009 1.1826 14 6 3.4189 -5.3547 1.1845 15 6 4.0279 -5.7471 0.0073 16 6 3.7379 -5.0874 -1.1747 17 9 4.3329 -5.4697 -2.3258 18 6 2.8377 -4.0351 -1.1762 19 6 2.5216 -3.3153 -2.4619 20 9 3.4114 -2.2488 -2.6301 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1581 -3.4133 1.1912 23 1 0.9637 -2.5251 2.0390 24 1 2.0523 -3.9924 2.1036 25 1 3.6451 -5.8693 2.1068 26 1 4.7300 -6.5678 0.0097 27 1 2.6205 -4.0064 -3.2990 28 1 1.5010 -2.9345 -2.4237 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259939097.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:56 Heat of formation + Delta-G solvation = -88.206534 kcal Electronic energy + Delta-G solvation = -15769.144185 eV Core-core repulsion = 12840.996352 eV Total energy + Delta-G solvation = -2928.147834 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.98618 -48.45071 -40.32887 -36.35543 -33.70801 -33.16938 -30.52368 -28.13916 -27.32799 -24.90429 -22.58555 -21.72361 -18.60374 -18.26226 -17.82972 -17.17666 -17.02981 -16.51047 -16.27985 -16.01990 -15.99368 -15.50149 -14.78702 -14.61251 -14.08362 -13.55126 -13.37445 -13.07399 -12.82749 -12.73486 -12.40328 -12.09597 -11.84919 -11.45891 -11.25428 -10.55667 -9.82499 -9.56015 -8.94758 -7.99468 -6.17991 0.15559 0.32130 1.39721 1.43349 1.53484 2.44724 2.66663 3.21788 3.28448 3.54267 3.75037 3.91694 4.15927 4.16439 4.30520 4.51316 4.57243 4.70955 4.95888 5.06642 5.15866 5.23155 5.40240 5.66895 5.77359 5.96691 6.16054 6.64812 7.09389 7.26328 7.53558 9.03876 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.030039 B = 0.010261 C = 0.008720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.901484 B = 2728.048737 C = 3210.295296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.042 3.958 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.278 1.278 7 C -0.526 4.526 8 H 0.037 0.963 9 C 0.257 3.743 10 H 0.025 0.975 11 N -0.820 5.820 12 C -0.051 4.051 13 C -0.149 4.149 14 C -0.069 4.069 15 C -0.171 4.171 16 C 0.100 3.900 17 F -0.144 7.144 18 C -0.188 4.188 19 C 0.112 3.888 20 F -0.222 7.222 21 H 0.256 0.744 22 H 0.316 0.684 23 H 0.327 0.673 24 H 0.137 0.863 25 H 0.170 0.830 26 H 0.163 0.837 27 H 0.095 0.905 28 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.195 -11.369 0.990 12.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.162 4.162 3 Si 0.764 3.236 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.204 1.204 7 C -0.565 4.565 8 H 0.056 0.944 9 C 0.147 3.853 10 H 0.042 0.958 11 N -0.348 5.348 12 C -0.054 4.054 13 C -0.168 4.168 14 C -0.086 4.086 15 C -0.189 4.189 16 C 0.081 3.919 17 F -0.123 7.123 18 C -0.190 4.190 19 C 0.057 3.943 20 F -0.203 7.203 21 H 0.065 0.935 22 H 0.128 0.872 23 H 0.141 0.859 24 H 0.155 0.845 25 H 0.188 0.812 26 H 0.181 0.819 27 H 0.113 0.887 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.714 -10.552 0.675 11.577 hybrid contribution 0.958 0.322 -0.231 1.037 sum 5.672 -10.230 0.444 11.706 Atomic orbital electron populations 1.70192 1.06628 1.26239 1.48241 1.25506 0.95325 1.01241 0.94145 0.85847 0.79001 0.81143 0.77583 1.20242 1.20833 1.20356 1.20917 0.91563 0.90656 1.53360 0.94443 1.17942 0.87692 0.89077 0.90625 0.95770 1.58908 1.28333 1.43452 1.04098 1.21389 0.96335 0.95381 0.92290 1.21304 1.00493 0.97258 0.97711 1.21391 0.93609 0.95056 0.98580 1.21342 1.03971 1.02874 0.90745 1.17783 0.95031 0.96278 0.82830 1.91437 1.82117 1.90445 1.48309 1.20197 1.02135 0.99165 0.97530 1.20661 0.92905 0.85568 0.95159 1.92756 1.71327 1.59715 1.96486 0.93528 0.87185 0.85888 0.84526 0.81240 0.81933 0.88678 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.49 12.77 21.45 0.27 -50.21 15 2 C 0.04 2.31 5.39 84.66 0.46 2.76 15 3 Si 0.94 44.70 29.54 68.60 2.03 46.73 15 4 H -0.28 -13.30 7.11 99.48 0.71 -12.59 15 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 15 6 H -0.28 -12.84 7.11 99.48 0.71 -12.13 15 7 C -0.53 -28.63 8.44 25.60 0.22 -28.41 15 8 H 0.04 2.14 7.74 -2.91 -0.02 2.12 15 9 C 0.26 12.21 2.30 43.42 0.10 12.31 15 10 H 0.02 1.30 6.41 -2.39 -0.02 1.28 15 11 N -0.82 -35.95 8.02 -174.96 -1.40 -37.36 15 12 C -0.05 -2.04 5.01 -19.87 -0.10 -2.14 15 13 C -0.15 -4.81 9.25 22.27 0.21 -4.61 15 14 C -0.07 -1.73 10.04 22.26 0.22 -1.51 15 15 C -0.17 -4.53 10.03 22.31 0.22 -4.31 15 16 C 0.10 3.34 7.24 22.38 0.16 3.50 15 17 F -0.14 -4.70 16.48 44.97 0.74 -3.96 15 18 C -0.19 -7.28 5.60 -19.82 -0.11 -7.39 15 19 C 0.11 4.36 6.89 71.24 0.49 4.86 15 20 F -0.22 -10.09 17.31 44.97 0.78 -9.31 15 21 H 0.26 14.10 8.31 -92.71 -0.77 13.33 15 22 H 0.32 12.04 9.06 -89.69 -0.81 11.23 15 23 H 0.33 13.40 7.27 -89.69 -0.65 12.75 15 24 H 0.14 4.03 6.24 -2.91 -0.02 4.02 15 25 H 0.17 2.81 8.06 -2.91 -0.02 2.78 15 26 H 0.16 3.16 8.06 -2.91 -0.02 3.14 15 27 H 0.10 3.08 7.64 -2.39 -0.02 3.06 15 28 H 0.08 3.33 6.12 -2.39 -0.01 3.32 15 Total: -1.00 -63.38 250.54 4.03 -59.34 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -0.25 Total: 19.71 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 1.87 Total: -24.95 kcal Atomic # 7 Polarization: -86.44 SS G_CDS: -1.13 Total: -87.57 kcal Atomic # 9 Polarization: -14.79 SS G_CDS: 1.52 Total: -13.27 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -63.38 4.03 -59.34 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259939097.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.862 kcal (2) G-P(sol) polarization free energy of solvation -63.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds