Wall clock time and date at job start Mon Mar 30 2020 02:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38256 * 120.00001 * 2 1 4 4 C 1.38219 * 120.07363 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.96386 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47556 * 339.99991 * 5 4 3 7 7 N 1.46905 * 109.46910 * 220.00030 * 5 4 3 8 8 C 1.50700 * 109.47079 * 100.00187 * 5 4 3 9 9 H 1.08003 * 120.00031 * 359.97438 * 8 5 4 10 10 C 1.37877 * 119.99851 * 179.97438 * 8 5 4 11 11 N 1.31518 * 119.99649 * 180.02562 * 10 8 5 12 12 Si 1.86797 * 120.00077 * 359.97438 * 10 8 5 13 13 H 1.48502 * 109.46740 * 90.00213 * 12 10 8 14 14 H 1.48502 * 109.47220 * 209.99893 * 12 10 8 15 15 H 1.48500 * 109.47129 * 330.00181 * 12 10 8 16 16 C 1.38255 * 120.06577 * 0.27434 * 4 3 2 17 17 C 1.38368 * 120.00162 * 359.45674 * 16 4 3 18 18 F 1.35102 * 120.03601 * 180.25063 * 17 16 4 19 19 C 1.38365 * 120.00154 * 179.97438 * 2 1 3 20 20 F 1.35097 * 120.03647 * 0.04248 * 19 2 1 21 21 H 1.09004 * 109.47199 * 89.99797 * 1 2 3 22 22 H 1.09000 * 109.47477 * 209.99922 * 1 2 3 23 23 H 1.09003 * 109.47333 * 329.99947 * 1 2 3 24 24 H 1.08007 * 119.96260 * 359.96094 * 3 2 1 25 25 H 1.00901 * 110.99869 * 300.00472 * 7 5 4 26 26 H 1.00896 * 110.99543 * 63.95595 * 7 5 4 27 27 H 0.97003 * 120.00069 * 179.97438 * 11 10 8 28 28 H 1.07996 * 119.99381 * 179.69979 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1991 0.0005 5 6 4.3314 2.5056 0.0011 6 1 3.6754 3.3020 -0.3504 7 7 5.4956 2.4016 -0.8888 8 6 4.7951 2.8179 1.4006 9 1 4.5683 2.1383 2.2089 10 6 5.5089 3.9710 1.6491 11 7 5.9141 4.2432 2.8704 12 14 5.9018 5.1459 0.2510 13 1 4.8107 6.1449 0.1227 14 1 7.1812 5.8440 0.5359 15 1 6.0259 4.3827 -1.0168 16 6 4.2746 0.0035 -0.0047 17 6 3.5857 -1.1965 0.0010 18 9 4.2634 -2.3653 0.0010 19 6 2.1988 -1.1983 0.0005 20 9 1.5241 -2.3687 0.0002 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6576 2.1324 -0.0006 25 1 6.1195 1.6696 -0.5838 26 1 5.2080 2.2566 -1.8449 27 1 6.4166 5.0542 3.0452 28 1 5.3545 0.0062 -0.0091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259975280.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:56 Heat of formation + Delta-G solvation = -67.388509 kcal Electronic energy + Delta-G solvation = -15385.355609 eV Core-core repulsion = 12458.110513 eV Total energy + Delta-G solvation = -2927.245096 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.17312 -48.25805 -39.04877 -35.08395 -32.33990 -31.62486 -29.59683 -26.90993 -26.33183 -22.93068 -22.20861 -19.84633 -17.53313 -17.19608 -16.68739 -16.38061 -16.03666 -14.78839 -14.71919 -14.50893 -14.16668 -13.92549 -13.35173 -13.23304 -13.01175 -12.52615 -12.31549 -11.87516 -11.60309 -11.49090 -11.00689 -10.79290 -10.22228 -10.06364 -9.36725 -8.62738 -8.52707 -8.14157 -7.34610 -6.08476 -4.20799 1.30804 1.33565 3.45283 3.56705 3.72614 3.86616 4.08302 4.61494 4.63134 4.81272 5.04493 5.18413 5.28183 5.49651 5.59260 5.60476 5.79769 5.84923 6.13448 6.18930 6.33184 6.42881 6.57097 6.98250 7.12013 7.46035 8.03597 8.21589 8.57002 8.90617 9.54084 11.00839 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.037433 B = 0.007891 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.826225 B = 3547.340309 C = 3814.755424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.093 4.093 3 C -0.103 4.103 4 C -0.042 4.042 5 C 0.219 3.781 6 H 0.053 0.947 7 N -0.834 5.834 8 C -0.526 4.526 9 H 0.071 0.929 10 C 0.087 3.913 11 N -0.896 5.896 12 Si 0.867 3.133 13 H -0.296 1.296 14 H -0.303 1.303 15 H -0.192 1.192 16 C -0.131 4.131 17 C 0.069 3.931 18 F -0.137 7.137 19 C 0.037 3.963 20 F -0.138 7.138 21 H 0.073 0.927 22 H 0.068 0.932 23 H 0.075 0.925 24 H 0.137 0.863 25 H 0.331 0.669 26 H 0.310 0.690 27 H 0.265 0.735 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.544 -7.263 -8.209 13.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.122 4.122 4 C -0.045 4.045 5 C 0.110 3.890 6 H 0.070 0.930 7 N -0.363 5.363 8 C -0.564 4.564 9 H 0.089 0.911 10 C -0.118 4.118 11 N -0.532 5.532 12 Si 0.693 3.307 13 H -0.223 1.223 14 H -0.230 1.230 15 H -0.113 1.113 16 C -0.150 4.150 17 C 0.049 3.951 18 F -0.115 7.115 19 C 0.017 3.983 20 F -0.117 7.117 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.094 0.906 24 H 0.155 0.845 25 H 0.145 0.855 26 H 0.121 0.879 27 H 0.074 0.926 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -7.264 -6.495 -7.878 12.530 hybrid contribution -0.030 -0.794 -0.427 0.902 sum -7.293 -7.289 -8.305 13.240 Atomic orbital electron populations 1.20706 0.89987 1.03407 1.02644 1.19787 0.96902 0.91209 1.01551 1.20969 0.93904 0.96901 1.00410 1.21278 0.93888 0.97608 0.91709 1.18665 0.87893 0.87660 0.94779 0.92966 1.60074 1.19152 1.52823 1.04272 1.20681 1.37351 1.08028 0.90363 0.91108 1.24982 0.93422 0.97584 0.95781 1.69951 1.36700 1.25937 1.20602 0.87199 0.76547 0.79260 0.87664 1.22347 1.23039 1.11311 1.20899 1.01305 0.89784 1.03061 1.17666 0.88205 0.82370 1.06821 1.91478 1.79875 1.45965 1.94220 1.17360 0.88160 0.81922 1.10904 1.91440 1.79990 1.45705 1.94553 0.90857 0.91343 0.90565 0.84534 0.85476 0.87858 0.92607 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 9.83 36.00 0.35 -0.94 15 2 C -0.09 -1.42 5.88 -104.57 -0.62 -2.04 15 3 C -0.10 -1.69 9.32 -39.58 -0.37 -2.06 15 4 C -0.04 -0.78 4.88 -104.62 -0.51 -1.29 15 5 C 0.22 4.59 2.35 -70.01 -0.16 4.42 15 6 H 0.05 1.09 7.43 -51.93 -0.39 0.71 15 7 N -0.83 -15.76 5.65 -6.65 -0.04 -15.79 15 8 C -0.53 -13.89 9.29 -34.44 -0.32 -14.21 15 9 H 0.07 2.09 7.98 -52.48 -0.42 1.67 15 10 C 0.09 2.42 5.47 -17.82 -0.10 2.32 15 11 N -0.90 -26.89 13.96 55.43 0.77 -26.11 15 12 Si 0.87 20.60 26.94 -169.99 -4.58 16.02 15 13 H -0.30 -7.14 7.11 56.52 0.40 -6.73 15 14 H -0.30 -7.51 7.11 56.52 0.40 -7.11 15 15 H -0.19 -4.15 5.16 56.52 0.29 -3.86 15 16 C -0.13 -2.33 9.27 -39.53 -0.37 -2.70 15 17 C 0.07 1.21 7.31 -39.36 -0.29 0.92 15 18 F -0.14 -2.39 17.18 2.25 0.04 -2.36 15 19 C 0.04 0.61 7.25 -39.37 -0.29 0.32 15 20 F -0.14 -2.26 16.39 2.25 0.04 -2.23 15 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.07 0.78 7.64 -51.93 -0.40 0.38 15 23 H 0.08 0.79 8.09 -51.93 -0.42 0.37 15 24 H 0.14 2.01 8.03 -52.48 -0.42 1.59 15 25 H 0.33 6.06 7.33 -39.29 -0.29 5.77 15 26 H 0.31 4.97 9.06 -39.29 -0.36 4.62 15 27 H 0.26 7.52 8.31 -40.82 -0.34 7.18 15 28 H 0.14 2.41 6.65 -52.49 -0.35 2.06 15 LS Contribution 249.02 15.07 3.75 3.75 Total: -1.00 -29.61 249.02 -5.38 -34.99 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -2.70 Total: 6.95 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -2.66 Total: -15.23 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.74 Total: -41.91 kcal Atomic # 9 Polarization: -4.66 SS G_CDS: 0.08 Total: -4.58 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.58 Total: 16.02 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.61 -5.38 -34.99 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975280.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.396 kcal (2) G-P(sol) polarization free energy of solvation -29.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds