Wall clock time and date at job start Mon Mar 30 2020 02:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38256 * 120.00001 * 2 1 4 4 C 1.38219 * 120.07363 * 179.97438 * 3 2 1 5 5 C 1.50698 * 119.96386 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.47556 * 339.99991 * 5 4 3 7 7 N 1.46905 * 109.46910 * 220.00030 * 5 4 3 8 8 C 1.50700 * 109.47079 * 100.00187 * 5 4 3 9 9 H 1.08003 * 120.00031 * 359.97438 * 8 5 4 10 10 C 1.37877 * 119.99851 * 179.97438 * 8 5 4 11 11 N 1.31518 * 119.99649 * 180.02562 * 10 8 5 12 12 Si 1.86797 * 120.00077 * 359.97438 * 10 8 5 13 13 H 1.48502 * 109.46740 * 90.00213 * 12 10 8 14 14 H 1.48502 * 109.47220 * 209.99893 * 12 10 8 15 15 H 1.48500 * 109.47129 * 330.00181 * 12 10 8 16 16 C 1.38255 * 120.06577 * 0.27434 * 4 3 2 17 17 C 1.38368 * 120.00162 * 359.45674 * 16 4 3 18 18 F 1.35102 * 120.03601 * 180.25063 * 17 16 4 19 19 C 1.38365 * 120.00154 * 179.97438 * 2 1 3 20 20 F 1.35097 * 120.03647 * 0.04248 * 19 2 1 21 21 H 1.09004 * 109.47199 * 89.99797 * 1 2 3 22 22 H 1.09000 * 109.47477 * 209.99922 * 1 2 3 23 23 H 1.09003 * 109.47333 * 329.99947 * 1 2 3 24 24 H 1.08007 * 119.96260 * 359.96094 * 3 2 1 25 25 H 1.00901 * 110.99869 * 300.00472 * 7 5 4 26 26 H 1.00896 * 110.99543 * 63.95595 * 7 5 4 27 27 H 0.97003 * 120.00069 * 179.97438 * 11 10 8 28 28 H 1.07996 * 119.99381 * 179.69979 * 16 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1991 0.0005 5 6 4.3314 2.5056 0.0011 6 1 3.6754 3.3020 -0.3504 7 7 5.4956 2.4016 -0.8888 8 6 4.7951 2.8179 1.4006 9 1 4.5683 2.1383 2.2089 10 6 5.5089 3.9710 1.6491 11 7 5.9141 4.2432 2.8704 12 14 5.9018 5.1459 0.2510 13 1 4.8107 6.1449 0.1227 14 1 7.1812 5.8440 0.5359 15 1 6.0259 4.3827 -1.0168 16 6 4.2746 0.0035 -0.0047 17 6 3.5857 -1.1965 0.0010 18 9 4.2634 -2.3653 0.0010 19 6 2.1988 -1.1983 0.0005 20 9 1.5241 -2.3687 0.0002 21 1 -0.3634 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3634 0.8900 0.5138 24 1 1.6576 2.1324 -0.0006 25 1 6.1195 1.6696 -0.5838 26 1 5.2080 2.2566 -1.8449 27 1 6.4166 5.0542 3.0452 28 1 5.3545 0.0062 -0.0091 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259975280.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:54:55 Heat of formation + Delta-G solvation = -86.616384 kcal Electronic energy + Delta-G solvation = -15386.189393 eV Core-core repulsion = 12458.110513 eV Total energy + Delta-G solvation = -2928.078880 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.51212 -49.59791 -40.40824 -36.66156 -34.11529 -33.12652 -30.98260 -28.27898 -27.99001 -24.53863 -23.53216 -21.36281 -19.01836 -18.85555 -18.13460 -17.83345 -17.38203 -16.56822 -16.05782 -16.03213 -15.70115 -15.45295 -14.63642 -14.39994 -14.29262 -14.07532 -13.90699 -13.17623 -13.07298 -12.91324 -12.60950 -12.32393 -11.96832 -11.78558 -11.35194 -10.72010 -9.80297 -9.56184 -8.92078 -8.21417 -6.36492 -0.04680 0.02892 1.56229 1.64607 1.99639 2.38387 2.64296 2.77458 3.17570 3.30709 3.57607 3.74680 3.98355 4.22583 4.24885 4.48247 4.68010 4.75726 4.78181 4.95209 5.03954 5.16603 5.23301 5.46021 5.61538 5.80926 6.14625 6.48021 6.79131 7.03788 7.42272 8.91720 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.037433 B = 0.007891 C = 0.007338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.826225 B = 3547.340309 C = 3814.755424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.084 4.084 3 C -0.102 4.102 4 C -0.060 4.060 5 C 0.229 3.771 6 H 0.062 0.938 7 N -0.837 5.837 8 C -0.520 4.520 9 H 0.024 0.976 10 C 0.027 3.973 11 N -0.952 5.952 12 Si 0.930 3.070 13 H -0.297 1.297 14 H -0.320 1.320 15 H -0.152 1.152 16 C -0.137 4.137 17 C 0.058 3.942 18 F -0.140 7.140 19 C 0.032 3.968 20 F -0.136 7.136 21 H 0.095 0.905 22 H 0.071 0.929 23 H 0.092 0.908 24 H 0.156 0.844 25 H 0.335 0.665 26 H 0.334 0.666 27 H 0.262 0.738 28 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.925 -7.342 -10.403 15.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.085 4.085 3 C -0.121 4.121 4 C -0.063 4.063 5 C 0.118 3.882 6 H 0.079 0.921 7 N -0.368 5.368 8 C -0.558 4.558 9 H 0.043 0.957 10 C -0.172 4.172 11 N -0.592 5.592 12 Si 0.755 3.245 13 H -0.225 1.225 14 H -0.249 1.249 15 H -0.072 1.072 16 C -0.156 4.156 17 C 0.038 3.962 18 F -0.119 7.119 19 C 0.012 3.988 20 F -0.115 7.115 21 H 0.114 0.886 22 H 0.090 0.910 23 H 0.110 0.890 24 H 0.174 0.826 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.071 0.929 28 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.665 -6.606 -10.100 14.858 hybrid contribution 0.325 -0.898 0.306 1.002 sum -8.341 -7.503 -9.795 14.893 Atomic orbital electron populations 1.20837 0.87102 1.04427 1.04356 1.20130 0.98858 0.90026 0.99461 1.21202 0.93176 0.98227 0.99469 1.21082 0.94854 0.96560 0.93793 1.18344 0.88609 0.89278 0.91922 0.92069 1.59737 1.18381 1.53279 1.05392 1.20937 1.36091 1.06504 0.92295 0.95739 1.25925 0.93594 0.99695 0.97967 1.70111 1.38965 1.26873 1.23207 0.86307 0.75140 0.76884 0.86143 1.22478 1.24885 1.07237 1.20885 1.01430 0.89897 1.03354 1.17768 0.88737 0.82194 1.07548 1.91465 1.80057 1.46057 1.94324 1.17559 0.87964 0.82577 1.10707 1.91445 1.79833 1.45711 1.94507 0.88640 0.90973 0.88952 0.82618 0.85026 0.85226 0.92923 0.84076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 9.83 71.23 0.70 -1.48 15 2 C -0.08 -2.32 5.88 -19.83 -0.12 -2.43 15 3 C -0.10 -3.08 9.32 22.27 0.21 -2.88 15 4 C -0.06 -2.13 4.88 -19.87 -0.10 -2.22 15 5 C 0.23 9.15 2.35 43.42 0.10 9.25 15 6 H 0.06 2.38 7.43 -2.39 -0.02 2.36 15 7 N -0.84 -29.34 5.65 -174.94 -0.99 -30.33 15 8 C -0.52 -27.67 9.29 25.60 0.24 -27.44 15 9 H 0.02 1.49 7.98 -2.91 -0.02 1.47 15 10 C 0.03 1.50 5.47 84.65 0.46 1.97 15 11 N -0.95 -58.98 13.96 21.45 0.30 -58.68 15 12 Si 0.93 42.17 26.94 68.60 1.85 44.02 15 13 H -0.30 -13.46 7.11 99.48 0.71 -12.75 15 14 H -0.32 -15.37 7.11 99.48 0.71 -14.66 15 15 H -0.15 -5.91 5.16 99.48 0.51 -5.40 15 16 C -0.14 -4.72 9.27 22.30 0.21 -4.51 15 17 C 0.06 1.95 7.31 22.41 0.16 2.11 15 18 F -0.14 -4.82 17.18 44.97 0.77 -4.04 15 19 C 0.03 1.01 7.25 22.41 0.16 1.17 15 20 F -0.14 -4.19 16.39 44.97 0.74 -3.45 15 21 H 0.10 1.51 8.14 -2.38 -0.02 1.49 15 22 H 0.07 1.39 7.64 -2.39 -0.02 1.38 15 23 H 0.09 1.55 8.09 -2.39 -0.02 1.53 15 24 H 0.16 4.06 8.03 -2.91 -0.02 4.03 15 25 H 0.34 11.63 7.33 -89.69 -0.66 10.97 15 26 H 0.33 9.46 9.06 -89.70 -0.81 8.65 15 27 H 0.26 15.44 8.31 -92.71 -0.77 14.67 15 28 H 0.14 4.75 6.65 -2.91 -0.02 4.73 15 Total: -1.00 -64.72 249.02 4.24 -60.48 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -0.45 Total: 18.47 kcal Atomic # 6 Polarization: -28.49 SS G_CDS: 2.03 Total: -26.46 kcal Atomic # 7 Polarization: -88.32 SS G_CDS: -0.69 Total: -89.01 kcal Atomic # 9 Polarization: -9.00 SS G_CDS: 1.51 Total: -7.49 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.85 Total: 44.02 kcal Total: -64.72 4.24 -60.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259975280.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.138 kcal (2) G-P(sol) polarization free energy of solvation -64.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds