Wall clock time and date at job start Mon Mar 30 2020 03:11:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09006 * 109.47119 * 2 1
4 4 C 1.50708 * 109.46992 * 119.99732 * 2 1 3
5 5 H 1.07988 * 119.99842 * 84.99046 * 4 2 1
6 6 C 1.37883 * 119.99745 * 264.98645 * 4 2 1
7 7 N 1.31506 * 119.99642 * 176.19757 * 6 4 2
8 8 Si 1.86798 * 119.99910 * 356.47785 * 6 4 2
9 9 H 1.48506 * 109.46853 * 274.64991 * 8 6 4
10 10 H 1.48496 * 109.47402 * 34.65645 * 8 6 4
11 11 H 1.48496 * 109.46963 * 154.65701 * 8 6 4
12 12 C 1.50699 * 109.47584 * 239.99556 * 2 1 3
13 13 C 1.38230 * 120.41815 * 299.72617 * 12 2 1
14 14 N 1.31852 * 120.75839 * 179.77207 * 13 12 2
15 15 C 1.31885 * 121.73287 * 0.48534 * 14 13 12
16 16 C 1.38183 * 120.75854 * 359.78024 * 15 14 13
17 17 C 1.50703 * 120.41810 * 179.97438 * 16 15 14
18 18 F 1.39900 * 109.47068 * 120.01675 * 17 16 15
19 19 F 1.39895 * 109.47547 * 240.02286 * 17 16 15
20 20 C 1.38628 * 120.42184 * 119.99532 * 12 2 1
21 21 H 1.08993 * 109.47301 * 305.53582 * 1 2 3
22 22 H 1.08998 * 109.46708 * 65.54123 * 1 2 3
23 23 H 1.08998 * 109.46911 * 185.53750 * 1 2 3
24 24 H 0.97004 * 119.99742 * 180.02562 * 7 6 4
25 25 H 1.07997 * 119.61717 * 0.02562 * 13 12 2
26 26 H 1.07993 * 119.62090 * 179.75487 * 15 14 13
27 27 H 1.09007 * 109.46838 * 0.02562 * 17 16 15
28 28 H 1.08004 * 120.78435 * 0.02562 * 20 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2306
5 1 2.1353 -1.7854 1.2292
6 6 2.3605 0.0123 2.3581
7 7 2.7273 -0.6123 3.4557
8 14 2.2765 1.8781 2.3287
9 1 3.5496 2.4225 1.7917
10 1 1.1495 2.3094 1.4634
11 1 2.0640 2.3858 3.7080
12 6 2.0324 -0.7105 -1.2304
13 6 1.7085 -2.0354 -1.4548
14 7 2.1408 -2.6623 -2.5312
15 6 2.9007 -2.0610 -3.4259
16 6 3.2695 -0.7390 -3.2659
17 6 4.1386 -0.0597 -4.2927
18 9 3.4559 1.0373 -4.8292
19 9 5.3212 0.3779 -3.6869
20 6 2.8299 -0.0452 -2.1486
21 1 -0.3633 0.5972 0.8362
22 1 -0.3633 0.4255 -0.9354
23 1 -0.3633 -1.0229 0.0992
24 1 2.9578 -0.1039 4.2490
25 1 1.0910 -2.5619 -0.7422
26 1 3.2388 -2.6083 -4.2933
27 1 4.3776 -0.7640 -5.0896
28 1 3.1029 0.9887 -1.9970
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260018009.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:03
Heat of formation + Delta-G solvation = -81.580799 kcal
Electronic energy + Delta-G solvation = -15325.497668 eV
Core-core repulsion = 12397.637148 eV
Total energy + Delta-G solvation = -2927.860520 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-48.90886 -46.90183 -39.87547 -35.02220 -32.64457 -32.04579 -29.46892 -26.23830
-25.32613 -23.32497 -22.44113 -19.82302 -17.65008 -17.14140 -16.98777 -16.89743
-16.33999 -15.26638 -14.60459 -13.88643 -13.57107 -13.38288 -13.28033 -12.84410
-12.76701 -12.59282 -12.45809 -12.11608 -11.57172 -11.21827 -10.98788 -10.69557
-10.19601 -9.88321 -9.57470 -9.32789 -8.98146 -8.67876 -8.37352 -6.20872
-4.22159 1.29675 1.69469 3.20472 3.29184 3.29792 3.77784 4.10776
4.20594 4.30144 4.58662 4.80229 5.10329 5.13272 5.20129 5.42536
5.57459 5.80048 6.03509 6.26277 6.30152 6.45598 6.55365 6.72041
6.94102 7.08389 7.25504 7.56146 8.26770 8.35229 8.81480 9.39444
10.91593
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.028613 B = 0.008653 C = 0.007708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 978.339080 B = 3235.136897 C = 3631.898643
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.136 4.136
2 C 0.043 3.957
3 H 0.042 0.958
4 C -0.513 4.513
5 H 0.078 0.922
6 C 0.075 3.925
7 N -0.892 5.892
8 Si 0.873 3.127
9 H -0.274 1.274
10 H -0.263 1.263
11 H -0.286 1.286
12 C -0.075 4.075
13 C 0.125 3.875
14 N -0.487 5.487
15 C 0.103 3.897
16 C -0.229 4.229
17 C 0.321 3.679
18 F -0.203 7.203
19 F -0.200 7.200
20 C -0.053 4.053
21 H 0.050 0.950
22 H 0.025 0.975
23 H 0.051 0.949
24 H 0.266 0.734
25 H 0.162 0.838
26 H 0.151 0.849
27 H 0.117 0.883
28 H 0.131 0.869
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.333 1.252 -13.634 13.695
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.194 4.194
2 C 0.023 3.977
3 H 0.060 0.940
4 C -0.551 4.551
5 H 0.096 0.904
6 C -0.128 4.128
7 N -0.529 5.529
8 Si 0.700 3.300
9 H -0.200 1.200
10 H -0.187 1.187
11 H -0.212 1.212
12 C -0.077 4.077
13 C -0.032 4.032
14 N -0.195 5.195
15 C -0.055 4.055
16 C -0.232 4.232
17 C 0.267 3.733
18 F -0.184 7.184
19 F -0.182 7.182
20 C -0.079 4.079
21 H 0.069 0.931
22 H 0.044 0.956
23 H 0.070 0.930
24 H 0.076 0.924
25 H 0.179 0.821
26 H 0.169 0.831
27 H 0.135 0.865
28 H 0.149 0.851
Dipole moment (debyes) X Y Z Total
from point charges 0.168 0.427 -13.545 13.553
hybrid contribution 0.430 2.030 0.359 2.105
sum 0.598 2.456 -13.186 13.427
Atomic orbital electron populations
1.22028 0.97503 1.01034 0.98852 1.18315 0.92994 0.95699 0.90682
0.94007 1.20891 1.44549 0.95452 0.94190 0.90360 1.25025 0.94130
0.98362 0.95235 1.69878 1.44983 1.36016 1.02038 0.86918 0.79276
0.86278 0.77521 1.20017 1.18722 1.21235 1.21462 0.94821 0.95534
0.95894 1.22823 0.95736 0.91726 0.92868 1.67738 1.10487 1.38233
1.03010 1.22295 0.94801 0.90403 0.97988 1.21252 1.05176 0.97661
0.99110 1.20245 0.77575 0.83804 0.91723 1.92998 1.80488 1.57994
1.86927 1.93017 1.48578 1.91137 1.85422 1.21349 0.94575 1.00127
0.91839 0.93093 0.95633 0.93028 0.92356 0.82108 0.83136 0.86526
0.85114
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.70 8.92 37.16 0.33 -2.37 15
2 C 0.04 0.95 2.13 -92.92 -0.20 0.75 15
3 H 0.04 0.94 5.13 -51.93 -0.27 0.67 15
4 C -0.51 -13.56 8.64 -34.43 -0.30 -13.85 15
5 H 0.08 2.24 7.64 -52.49 -0.40 1.83 15
6 C 0.08 2.08 5.47 -17.82 -0.10 1.98 15
7 N -0.89 -26.31 13.96 55.43 0.77 -25.53 15
8 Si 0.87 20.64 26.93 -169.99 -4.58 16.07 15
9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 15
10 H -0.26 -5.87 6.73 56.52 0.38 -5.49 15
11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 15
12 C -0.08 -1.50 4.78 -104.48 -0.50 -2.00 15
13 C 0.12 2.38 9.85 -17.55 -0.17 2.21 15
14 N -0.49 -8.63 10.36 -13.25 -0.14 -8.77 15
15 C 0.10 1.54 10.83 -17.55 -0.19 1.35 15
16 C -0.23 -3.55 5.38 -104.48 -0.56 -4.11 15
17 C 0.32 4.07 5.47 36.01 0.20 4.26 15
18 F -0.20 -2.83 17.27 2.25 0.04 -2.79 15
19 F -0.20 -2.96 17.27 2.25 0.04 -2.93 15
20 C -0.05 -0.97 9.40 -39.28 -0.37 -1.34 15
21 H 0.05 1.02 7.99 -51.93 -0.41 0.61 15
22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 15
23 H 0.05 0.97 7.63 -51.93 -0.40 0.58 15
24 H 0.27 7.38 8.31 -40.82 -0.34 7.05 15
25 H 0.16 3.00 7.59 -52.49 -0.40 2.60 15
26 H 0.15 1.61 7.95 -52.49 -0.42 1.20 15
27 H 0.12 0.96 7.89 -51.93 -0.41 0.55 15
28 H 0.13 2.29 8.00 -52.48 -0.42 1.87 15
LS Contribution 253.88 15.07 3.83 3.83
Total: -1.00 -29.58 253.88 -4.60 -34.17
By element:
Atomic # 1 Polarization: 1.78 SS G_CDS: -2.70 Total: -0.93 kcal
Atomic # 6 Polarization: -11.26 SS G_CDS: -1.86 Total: -13.12 kcal
Atomic # 7 Polarization: -34.94 SS G_CDS: 0.64 Total: -34.30 kcal
Atomic # 9 Polarization: -5.79 SS G_CDS: 0.08 Total: -5.71 kcal
Atomic # 14 Polarization: 20.64 SS G_CDS: -4.58 Total: 16.07 kcal
Total LS contribution 3.83 Total: 3.83 kcal
Total: -29.58 -4.60 -34.17 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260018009.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.407 kcal
(2) G-P(sol) polarization free energy of solvation -29.575 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.982 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.598 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.174 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.581 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds