Wall clock time and date at job start Mon Mar 30 2020 03:11:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 H 1.09006 * 109.47119 * 2 1
4 4 C 1.50708 * 109.46992 * 119.99732 * 2 1 3
5 5 H 1.07988 * 119.99842 * 84.99046 * 4 2 1
6 6 C 1.37883 * 119.99745 * 264.98645 * 4 2 1
7 7 N 1.31506 * 119.99642 * 176.19757 * 6 4 2
8 8 Si 1.86798 * 119.99910 * 356.47785 * 6 4 2
9 9 H 1.48506 * 109.46853 * 274.64991 * 8 6 4
10 10 H 1.48496 * 109.47402 * 34.65645 * 8 6 4
11 11 H 1.48496 * 109.46963 * 154.65701 * 8 6 4
12 12 C 1.50699 * 109.47584 * 239.99556 * 2 1 3
13 13 C 1.38230 * 120.41815 * 299.72617 * 12 2 1
14 14 N 1.31852 * 120.75839 * 179.77207 * 13 12 2
15 15 C 1.31885 * 121.73287 * 0.48534 * 14 13 12
16 16 C 1.38183 * 120.75854 * 359.78024 * 15 14 13
17 17 C 1.50703 * 120.41810 * 179.97438 * 16 15 14
18 18 F 1.39900 * 109.47068 * 120.01675 * 17 16 15
19 19 F 1.39895 * 109.47547 * 240.02286 * 17 16 15
20 20 C 1.38628 * 120.42184 * 119.99532 * 12 2 1
21 21 H 1.08993 * 109.47301 * 305.53582 * 1 2 3
22 22 H 1.08998 * 109.46708 * 65.54123 * 1 2 3
23 23 H 1.08998 * 109.46911 * 185.53750 * 1 2 3
24 24 H 0.97004 * 119.99742 * 180.02562 * 7 6 4
25 25 H 1.07997 * 119.61717 * 0.02562 * 13 12 2
26 26 H 1.07993 * 119.62090 * 179.75487 * 15 14 13
27 27 H 1.09007 * 109.46838 * 0.02562 * 17 16 15
28 28 H 1.08004 * 120.78435 * 0.02562 * 20 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2306
5 1 2.1353 -1.7854 1.2292
6 6 2.3605 0.0123 2.3581
7 7 2.7273 -0.6123 3.4557
8 14 2.2765 1.8781 2.3287
9 1 3.5496 2.4225 1.7917
10 1 1.1495 2.3094 1.4634
11 1 2.0640 2.3858 3.7080
12 6 2.0324 -0.7105 -1.2304
13 6 1.7085 -2.0354 -1.4548
14 7 2.1408 -2.6623 -2.5312
15 6 2.9007 -2.0610 -3.4259
16 6 3.2695 -0.7390 -3.2659
17 6 4.1386 -0.0597 -4.2927
18 9 3.4559 1.0373 -4.8292
19 9 5.3212 0.3779 -3.6869
20 6 2.8299 -0.0452 -2.1486
21 1 -0.3633 0.5972 0.8362
22 1 -0.3633 0.4255 -0.9354
23 1 -0.3633 -1.0229 0.0992
24 1 2.9578 -0.1039 4.2490
25 1 1.0910 -2.5619 -0.7422
26 1 3.2388 -2.6083 -4.2933
27 1 4.3776 -0.7640 -5.0896
28 1 3.1029 0.9887 -1.9970
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260018009.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:03
Heat of formation + Delta-G solvation = -99.840727 kcal
Electronic energy + Delta-G solvation = -15326.289478 eV
Core-core repulsion = 12397.637148 eV
Total energy + Delta-G solvation = -2928.652330 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-49.94184 -47.94780 -41.24357 -36.71316 -34.06272 -33.87461 -30.99326 -27.40988
-27.23955 -24.77969 -23.79789 -21.39863 -19.22911 -18.43647 -18.19230 -18.17224
-17.58507 -16.71187 -16.38050 -15.26897 -15.03138 -14.70010 -14.52540 -14.33312
-14.15580 -14.09244 -13.94734 -13.53370 -13.09136 -12.88044 -12.64440 -12.29967
-11.84215 -11.66689 -11.30286 -10.79329 -10.75411 -10.42251 -9.83380 -8.31873
-6.36507 -0.03825 0.31695 1.33174 1.34873 1.44477 2.31643 2.73059
2.75739 3.05945 3.25770 3.50952 3.66629 3.90379 4.03321 4.09905
4.22647 4.27459 4.63705 4.71588 4.89568 4.93689 5.00329 5.17649
5.30995 5.53633 5.67409 5.69534 6.24990 6.69273 6.93791 7.28441
8.84371
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.028613 B = 0.008653 C = 0.007708
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 978.339080 B = 3235.136897 C = 3631.898643
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.043 3.957
3 H 0.041 0.959
4 C -0.509 4.509
5 H 0.040 0.960
6 C 0.016 3.984
7 N -0.945 5.945
8 Si 0.933 3.067
9 H -0.270 1.270
10 H -0.239 1.239
11 H -0.287 1.287
12 C -0.102 4.102
13 C 0.114 3.886
14 N -0.500 5.500
15 C 0.116 3.884
16 C -0.227 4.227
17 C 0.322 3.678
18 F -0.210 7.210
19 F -0.214 7.214
20 C -0.064 4.064
21 H 0.044 0.956
22 H 0.051 0.949
23 H 0.051 0.949
24 H 0.267 0.733
25 H 0.151 0.849
26 H 0.204 0.796
27 H 0.177 0.823
28 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.561 2.026 -16.511 16.645
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.023 3.977
3 H 0.059 0.941
4 C -0.547 4.547
5 H 0.058 0.942
6 C -0.182 4.182
7 N -0.585 5.585
8 Si 0.757 3.243
9 H -0.196 1.196
10 H -0.163 1.163
11 H -0.213 1.213
12 C -0.104 4.104
13 C -0.042 4.042
14 N -0.208 5.208
15 C -0.042 4.042
16 C -0.229 4.229
17 C 0.268 3.732
18 F -0.191 7.191
19 F -0.195 7.195
20 C -0.090 4.090
21 H 0.063 0.937
22 H 0.070 0.930
23 H 0.070 0.930
24 H 0.076 0.924
25 H 0.168 0.832
26 H 0.221 0.779
27 H 0.194 0.806
28 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges 0.376 1.203 -16.444 16.492
hybrid contribution 0.389 1.671 1.128 2.053
sum 0.765 2.874 -15.316 15.602
Atomic orbital electron populations
1.21908 0.95713 1.01295 0.99970 1.18227 0.94392 0.95186 0.89899
0.94100 1.21137 1.43371 0.94089 0.96119 0.94154 1.25864 0.94202
1.03279 0.94821 1.70029 1.47543 1.37939 1.02981 0.85945 0.80110
0.80432 0.77807 1.19588 1.16272 1.21282 1.21224 0.96939 0.96051
0.96205 1.22694 0.96368 0.91527 0.93630 1.67789 1.11397 1.38525
1.03100 1.23140 0.92448 0.90398 0.98206 1.21627 1.04646 0.97960
0.98715 1.20728 0.76230 0.84184 0.92042 1.92988 1.80708 1.58629
1.86815 1.92995 1.49250 1.91363 1.85925 1.21519 0.94303 1.00530
0.92689 0.93653 0.93011 0.92997 0.92445 0.83169 0.77938 0.80648
0.84999
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -5.10 8.92 71.98 0.64 -4.45 15
2 C 0.04 1.88 2.13 -12.28 -0.03 1.85 15
3 H 0.04 1.79 5.13 -2.38 -0.01 1.78 15
4 C -0.51 -27.75 8.64 25.60 0.22 -27.52 15
5 H 0.04 2.44 7.64 -2.92 -0.02 2.41 15
6 C 0.02 0.90 5.47 84.66 0.46 1.36 15
7 N -0.95 -57.85 13.96 21.45 0.30 -57.55 15
8 Si 0.93 42.76 26.93 68.60 1.85 44.61 15
9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15
10 H -0.24 -9.97 6.73 99.48 0.67 -9.30 15
11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 15
12 C -0.10 -4.05 4.78 -19.77 -0.09 -4.14 15
13 C 0.11 4.32 9.85 84.69 0.83 5.16 15
14 N -0.50 -16.78 10.36 -195.85 -2.03 -18.81 15
15 C 0.12 3.00 10.83 84.67 0.92 3.92 15
16 C -0.23 -6.26 5.38 -19.77 -0.11 -6.37 15
17 C 0.32 6.74 5.47 71.24 0.39 7.13 15
18 F -0.21 -5.10 17.27 44.97 0.78 -4.32 15
19 F -0.21 -5.65 17.27 44.97 0.78 -4.88 15
20 C -0.06 -2.25 9.40 22.46 0.21 -2.03 15
21 H 0.04 1.77 7.99 -2.39 -0.02 1.75 15
22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15
23 H 0.05 1.97 7.63 -2.39 -0.02 1.95 15
24 H 0.27 15.33 8.31 -92.71 -0.77 14.55 15
25 H 0.15 5.84 7.59 -2.91 -0.02 5.82 15
26 H 0.20 3.05 7.95 -2.91 -0.02 3.03 15
27 H 0.18 1.72 7.89 -2.38 -0.02 1.70 15
28 H 0.13 4.45 8.00 -2.91 -0.02 4.43 15
Total: -1.00 -66.23 253.88 6.26 -59.98
By element:
Atomic # 1 Polarization: 4.93 SS G_CDS: 1.13 Total: 6.06 kcal
Atomic # 6 Polarization: -28.55 SS G_CDS: 3.45 Total: -25.10 kcal
Atomic # 7 Polarization: -74.63 SS G_CDS: -1.73 Total: -76.36 kcal
Atomic # 9 Polarization: -10.75 SS G_CDS: 1.55 Total: -9.20 kcal
Atomic # 14 Polarization: 42.76 SS G_CDS: 1.85 Total: 44.61 kcal
Total: -66.23 6.26 -59.98 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260018009.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.865 kcal
(2) G-P(sol) polarization free energy of solvation -66.232 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.097 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.257 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.976 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.841 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds