Wall clock time and date at job start Mon Mar 30 2020 03:11:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.47119 * 2 1 4 4 C 1.50708 * 109.46992 * 119.99732 * 2 1 3 5 5 H 1.07988 * 119.99842 * 84.99046 * 4 2 1 6 6 C 1.37883 * 119.99745 * 264.98645 * 4 2 1 7 7 N 1.31506 * 119.99642 * 176.19757 * 6 4 2 8 8 Si 1.86798 * 119.99910 * 356.47785 * 6 4 2 9 9 H 1.48506 * 109.46853 * 274.64991 * 8 6 4 10 10 H 1.48496 * 109.47402 * 34.65645 * 8 6 4 11 11 H 1.48496 * 109.46963 * 154.65701 * 8 6 4 12 12 C 1.50699 * 109.47584 * 239.99556 * 2 1 3 13 13 C 1.38230 * 120.41815 * 299.72617 * 12 2 1 14 14 N 1.31852 * 120.75839 * 179.77207 * 13 12 2 15 15 C 1.31885 * 121.73287 * 0.48534 * 14 13 12 16 16 C 1.38183 * 120.75854 * 359.78024 * 15 14 13 17 17 C 1.50703 * 120.41810 * 179.97438 * 16 15 14 18 18 F 1.39900 * 109.47068 * 120.01675 * 17 16 15 19 19 F 1.39895 * 109.47547 * 240.02286 * 17 16 15 20 20 C 1.38628 * 120.42184 * 119.99532 * 12 2 1 21 21 H 1.08993 * 109.47301 * 305.53582 * 1 2 3 22 22 H 1.08998 * 109.46708 * 65.54123 * 1 2 3 23 23 H 1.08998 * 109.46911 * 185.53750 * 1 2 3 24 24 H 0.97004 * 119.99742 * 180.02562 * 7 6 4 25 25 H 1.07997 * 119.61717 * 0.02562 * 13 12 2 26 26 H 1.07993 * 119.62090 * 179.75487 * 15 14 13 27 27 H 1.09007 * 109.46838 * 0.02562 * 17 16 15 28 28 H 1.08004 * 120.78435 * 0.02562 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.1353 -1.7854 1.2292 6 6 2.3605 0.0123 2.3581 7 7 2.7273 -0.6123 3.4557 8 14 2.2765 1.8781 2.3287 9 1 3.5496 2.4225 1.7917 10 1 1.1495 2.3094 1.4634 11 1 2.0640 2.3858 3.7080 12 6 2.0324 -0.7105 -1.2304 13 6 1.7085 -2.0354 -1.4548 14 7 2.1408 -2.6623 -2.5312 15 6 2.9007 -2.0610 -3.4259 16 6 3.2695 -0.7390 -3.2659 17 6 4.1386 -0.0597 -4.2927 18 9 3.4559 1.0373 -4.8292 19 9 5.3212 0.3779 -3.6869 20 6 2.8299 -0.0452 -2.1486 21 1 -0.3633 0.5972 0.8362 22 1 -0.3633 0.4255 -0.9354 23 1 -0.3633 -1.0229 0.0992 24 1 2.9578 -0.1039 4.2490 25 1 1.0910 -2.5619 -0.7422 26 1 3.2388 -2.6083 -4.2933 27 1 4.3776 -0.7640 -5.0896 28 1 3.1029 0.9887 -1.9970 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260018009.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:03 Heat of formation + Delta-G solvation = -99.840727 kcal Electronic energy + Delta-G solvation = -15326.289478 eV Core-core repulsion = 12397.637148 eV Total energy + Delta-G solvation = -2928.652330 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.94184 -47.94780 -41.24357 -36.71316 -34.06272 -33.87461 -30.99326 -27.40988 -27.23955 -24.77969 -23.79789 -21.39863 -19.22911 -18.43647 -18.19230 -18.17224 -17.58507 -16.71187 -16.38050 -15.26897 -15.03138 -14.70010 -14.52540 -14.33312 -14.15580 -14.09244 -13.94734 -13.53370 -13.09136 -12.88044 -12.64440 -12.29967 -11.84215 -11.66689 -11.30286 -10.79329 -10.75411 -10.42251 -9.83380 -8.31873 -6.36507 -0.03825 0.31695 1.33174 1.34873 1.44477 2.31643 2.73059 2.75739 3.05945 3.25770 3.50952 3.66629 3.90379 4.03321 4.09905 4.22647 4.27459 4.63705 4.71588 4.89568 4.93689 5.00329 5.17649 5.30995 5.53633 5.67409 5.69534 6.24990 6.69273 6.93791 7.28441 8.84371 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.028613 B = 0.008653 C = 0.007708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.339080 B = 3235.136897 C = 3631.898643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.043 3.957 3 H 0.041 0.959 4 C -0.509 4.509 5 H 0.040 0.960 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.933 3.067 9 H -0.270 1.270 10 H -0.239 1.239 11 H -0.287 1.287 12 C -0.102 4.102 13 C 0.114 3.886 14 N -0.500 5.500 15 C 0.116 3.884 16 C -0.227 4.227 17 C 0.322 3.678 18 F -0.210 7.210 19 F -0.214 7.214 20 C -0.064 4.064 21 H 0.044 0.956 22 H 0.051 0.949 23 H 0.051 0.949 24 H 0.267 0.733 25 H 0.151 0.849 26 H 0.204 0.796 27 H 0.177 0.823 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.561 2.026 -16.511 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.023 3.977 3 H 0.059 0.941 4 C -0.547 4.547 5 H 0.058 0.942 6 C -0.182 4.182 7 N -0.585 5.585 8 Si 0.757 3.243 9 H -0.196 1.196 10 H -0.163 1.163 11 H -0.213 1.213 12 C -0.104 4.104 13 C -0.042 4.042 14 N -0.208 5.208 15 C -0.042 4.042 16 C -0.229 4.229 17 C 0.268 3.732 18 F -0.191 7.191 19 F -0.195 7.195 20 C -0.090 4.090 21 H 0.063 0.937 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.168 0.832 26 H 0.221 0.779 27 H 0.194 0.806 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.376 1.203 -16.444 16.492 hybrid contribution 0.389 1.671 1.128 2.053 sum 0.765 2.874 -15.316 15.602 Atomic orbital electron populations 1.21908 0.95713 1.01295 0.99970 1.18227 0.94392 0.95186 0.89899 0.94100 1.21137 1.43371 0.94089 0.96119 0.94154 1.25864 0.94202 1.03279 0.94821 1.70029 1.47543 1.37939 1.02981 0.85945 0.80110 0.80432 0.77807 1.19588 1.16272 1.21282 1.21224 0.96939 0.96051 0.96205 1.22694 0.96368 0.91527 0.93630 1.67789 1.11397 1.38525 1.03100 1.23140 0.92448 0.90398 0.98206 1.21627 1.04646 0.97960 0.98715 1.20728 0.76230 0.84184 0.92042 1.92988 1.80708 1.58629 1.86815 1.92995 1.49250 1.91363 1.85925 1.21519 0.94303 1.00530 0.92689 0.93653 0.93011 0.92997 0.92445 0.83169 0.77938 0.80648 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 8.92 71.98 0.64 -4.45 15 2 C 0.04 1.88 2.13 -12.28 -0.03 1.85 15 3 H 0.04 1.79 5.13 -2.38 -0.01 1.78 15 4 C -0.51 -27.75 8.64 25.60 0.22 -27.52 15 5 H 0.04 2.44 7.64 -2.92 -0.02 2.41 15 6 C 0.02 0.90 5.47 84.66 0.46 1.36 15 7 N -0.95 -57.85 13.96 21.45 0.30 -57.55 15 8 Si 0.93 42.76 26.93 68.60 1.85 44.61 15 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 15 10 H -0.24 -9.97 6.73 99.48 0.67 -9.30 15 11 H -0.29 -13.06 7.11 99.48 0.71 -12.35 15 12 C -0.10 -4.05 4.78 -19.77 -0.09 -4.14 15 13 C 0.11 4.32 9.85 84.69 0.83 5.16 15 14 N -0.50 -16.78 10.36 -195.85 -2.03 -18.81 15 15 C 0.12 3.00 10.83 84.67 0.92 3.92 15 16 C -0.23 -6.26 5.38 -19.77 -0.11 -6.37 15 17 C 0.32 6.74 5.47 71.24 0.39 7.13 15 18 F -0.21 -5.10 17.27 44.97 0.78 -4.32 15 19 F -0.21 -5.65 17.27 44.97 0.78 -4.88 15 20 C -0.06 -2.25 9.40 22.46 0.21 -2.03 15 21 H 0.04 1.77 7.99 -2.39 -0.02 1.75 15 22 H 0.05 1.72 8.14 -2.39 -0.02 1.70 15 23 H 0.05 1.97 7.63 -2.39 -0.02 1.95 15 24 H 0.27 15.33 8.31 -92.71 -0.77 14.55 15 25 H 0.15 5.84 7.59 -2.91 -0.02 5.82 15 26 H 0.20 3.05 7.95 -2.91 -0.02 3.03 15 27 H 0.18 1.72 7.89 -2.38 -0.02 1.70 15 28 H 0.13 4.45 8.00 -2.91 -0.02 4.43 15 Total: -1.00 -66.23 253.88 6.26 -59.98 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: 1.13 Total: 6.06 kcal Atomic # 6 Polarization: -28.55 SS G_CDS: 3.45 Total: -25.10 kcal Atomic # 7 Polarization: -74.63 SS G_CDS: -1.73 Total: -76.36 kcal Atomic # 9 Polarization: -10.75 SS G_CDS: 1.55 Total: -9.20 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 1.85 Total: 44.61 kcal Total: -66.23 6.26 -59.98 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260018009.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.865 kcal (2) G-P(sol) polarization free energy of solvation -66.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds