Wall clock time and date at job start Mon Mar 30 2020 02:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38071 * 120.04393 * 2 1 4 4 C 1.38302 * 120.08861 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.90902 * 180.02562 * 4 3 2 6 6 F 1.39899 * 109.47304 * 299.99726 * 5 4 3 7 7 F 1.39898 * 109.47401 * 59.99953 * 5 4 3 8 8 C 1.38350 * 120.17986 * 359.74542 * 4 3 2 9 9 C 1.38024 * 120.09107 * 0.50949 * 8 4 3 10 10 C 1.39053 * 120.04552 * 179.97438 * 2 1 3 11 11 N 1.39306 * 120.09042 * 0.04585 * 10 2 1 12 12 C 1.36839 * 119.99760 * 179.97438 * 11 10 2 13 13 H 1.07998 * 120.00695 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99571 * 180.02562 * 12 11 10 15 15 N 1.31584 * 120.00187 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99804 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47248 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47441 * 119.99797 * 16 14 12 19 19 H 1.48500 * 109.46707 * 239.99575 * 16 14 12 20 20 H 1.08993 * 109.47659 * 270.02660 * 1 2 3 21 21 H 1.09002 * 109.47123 * 30.02501 * 1 2 3 22 22 H 1.08999 * 109.46960 * 150.01942 * 1 2 3 23 23 H 1.08010 * 119.95451 * 359.95012 * 3 2 1 24 24 H 1.08999 * 109.47307 * 180.02562 * 5 4 3 25 25 H 1.08004 * 119.95756 * 180.25190 * 8 4 3 26 26 H 1.08002 * 120.05021 * 179.77457 * 9 8 4 27 27 H 0.96996 * 119.99352 * 359.97438 * 11 10 2 28 28 H 0.97005 * 120.00446 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1952 0.0000 4 6 3.5813 1.1963 0.0005 5 6 4.3318 2.5032 0.0011 6 9 3.9926 3.2362 -1.1411 7 9 3.9917 3.2358 1.1434 8 6 4.2778 0.0009 0.0064 9 6 3.5943 -1.1983 0.0011 10 6 2.2033 -1.2037 0.0005 11 7 1.5096 -2.4118 0.0001 12 6 2.1967 -3.5952 0.0001 13 1 3.2766 -3.5927 0.0000 14 6 1.5055 -4.7988 -0.0008 15 7 0.1896 -4.8019 -0.0012 16 14 2.4433 -6.4144 -0.0016 17 1 3.9027 -6.1396 -0.0016 18 1 2.0862 -7.1947 1.2103 19 1 2.0867 -7.1932 -1.2146 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6582 2.1306 -0.0008 24 1 5.4039 2.3066 0.0010 25 1 5.3578 0.0059 0.0109 26 1 4.1387 -2.1311 0.0020 27 1 0.5397 -2.4140 -0.0002 28 1 -0.2935 -5.6432 -0.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260164682.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:21 Heat of formation + Delta-G solvation = -88.926755 kcal Electronic energy + Delta-G solvation = -15110.094929 eV Core-core repulsion = 12181.915865 eV Total energy + Delta-G solvation = -2928.179065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.41484 -46.41571 -38.74342 -35.30154 -32.55404 -31.60397 -29.23061 -26.45223 -25.61042 -23.75814 -21.27363 -20.02657 -17.96216 -16.75546 -16.65361 -16.52812 -16.10728 -14.89540 -14.35945 -13.44551 -13.42872 -13.21578 -13.12353 -12.83899 -12.83360 -12.29920 -11.82987 -11.78516 -11.61932 -11.43114 -11.24604 -10.70636 -10.45676 -10.36184 -10.10566 -9.87083 -8.88833 -7.94213 -6.87059 -6.72350 -3.89143 2.26771 2.35280 3.06538 3.09150 3.12960 3.93195 4.36967 4.45077 4.88942 5.04978 5.10719 5.23266 5.69253 5.70271 5.74368 5.93713 6.15124 6.26857 6.42456 6.52547 6.81599 6.96771 7.10576 7.22914 7.37775 7.43686 7.57727 7.94350 8.60074 9.17845 9.37227 10.43767 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.046575 B = 0.006406 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.034887 B = 4369.804193 C = 4791.047801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.213 4.213 3 C -0.019 4.019 4 C -0.306 4.306 5 C 0.325 3.675 6 F -0.215 7.215 7 F -0.215 7.215 8 C -0.032 4.032 9 C -0.224 4.224 10 C 0.219 3.781 11 N -0.546 5.546 12 C -0.304 4.304 13 H 0.106 0.894 14 C 0.022 3.978 15 N -0.887 5.887 16 Si 0.934 3.066 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.278 1.278 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.056 0.944 23 H 0.104 0.896 24 H 0.101 0.899 25 H 0.106 0.894 26 H 0.119 0.881 27 H 0.402 0.598 28 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 6.730 0.001 8.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.219 4.219 3 C -0.038 4.038 4 C -0.311 4.311 5 C 0.272 3.728 6 F -0.196 7.196 7 F -0.196 7.196 8 C -0.052 4.052 9 C -0.248 4.248 10 C 0.095 3.905 11 N -0.147 5.147 12 C -0.434 4.434 13 H 0.123 0.877 14 C -0.182 4.182 15 N -0.523 5.523 16 Si 0.761 3.239 17 H -0.190 1.190 18 H -0.204 1.204 19 H -0.204 1.204 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.075 0.925 23 H 0.122 0.878 24 H 0.118 0.882 25 H 0.124 0.876 26 H 0.137 0.863 27 H 0.238 0.762 28 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.455 6.226 0.000 7.655 hybrid contribution -0.107 -0.773 0.003 0.780 sum 4.348 5.453 0.003 6.974 Atomic orbital electron populations 1.20438 0.92421 1.01391 1.00933 1.18944 0.94803 0.91689 1.16461 1.20119 0.92597 0.96147 0.94966 1.19302 0.94464 0.92513 1.24863 1.20176 0.98467 0.83753 0.70410 1.92943 1.94572 1.80013 1.52096 1.92943 1.94548 1.80041 1.52098 1.20303 0.97727 0.91372 0.95800 1.20335 0.92472 0.97342 1.14639 1.17736 0.91615 0.85642 0.95518 1.41249 1.08529 1.02148 1.62739 1.19863 0.93274 0.82692 1.47593 0.87681 1.25365 0.95784 1.00141 0.96954 1.69685 1.06177 1.28722 1.47707 0.85718 0.79475 0.80624 0.78109 1.19031 1.20418 1.20424 0.92760 0.92669 0.92540 0.87784 0.88190 0.87605 0.86275 0.76152 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.70 9.58 36.01 0.34 -1.36 15 2 C -0.21 -4.35 5.90 -104.38 -0.62 -4.96 15 3 C -0.02 -0.36 9.24 -39.62 -0.37 -0.73 15 4 C -0.31 -5.62 5.38 -104.56 -0.56 -6.18 15 5 C 0.33 5.13 5.45 36.01 0.20 5.32 15 6 F -0.21 -3.60 17.26 2.25 0.04 -3.57 15 7 F -0.21 -3.61 17.26 2.25 0.04 -3.57 15 8 C -0.03 -0.59 9.66 -39.62 -0.38 -0.97 15 9 C -0.22 -4.67 9.30 -39.34 -0.37 -5.03 15 10 C 0.22 4.89 6.60 -83.84 -0.55 4.34 15 11 N -0.55 -13.16 5.34 -9.60 -0.05 -13.21 15 12 C -0.30 -7.59 9.56 -15.11 -0.14 -7.73 15 13 H 0.11 2.51 5.68 -52.49 -0.30 2.21 15 14 C 0.02 0.54 5.50 -17.45 -0.10 0.44 15 15 N -0.89 -23.00 13.05 55.49 0.72 -22.28 15 16 Si 0.93 19.21 29.55 -169.99 -5.02 14.19 15 17 H -0.27 -5.31 7.11 56.52 0.40 -4.91 15 18 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 19 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 20 H 0.05 0.93 8.14 -51.93 -0.42 0.50 15 21 H 0.05 0.87 8.09 -51.93 -0.42 0.45 15 22 H 0.06 1.05 6.55 -51.93 -0.34 0.71 15 23 H 0.10 1.85 8.06 -52.48 -0.42 1.43 15 24 H 0.10 1.24 7.87 -51.93 -0.41 0.83 15 25 H 0.11 1.57 7.94 -52.48 -0.42 1.15 15 26 H 0.12 2.45 5.96 -52.49 -0.31 2.14 15 27 H 0.40 9.78 5.88 -40.82 -0.24 9.54 15 28 H 0.28 6.75 8.31 -40.82 -0.34 6.41 15 LS Contribution 252.42 15.07 3.80 3.80 Total: -1.00 -26.24 252.42 -5.43 -31.67 By element: Atomic # 1 Polarization: 12.23 SS G_CDS: -2.42 Total: 9.82 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: -2.55 Total: -16.86 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.67 Total: -35.49 kcal Atomic # 9 Polarization: -7.21 SS G_CDS: 0.08 Total: -7.13 kcal Atomic # 14 Polarization: 19.21 SS G_CDS: -5.02 Total: 14.19 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.24 -5.43 -31.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260164682.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.258 kcal (2) G-P(sol) polarization free energy of solvation -26.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds