Wall clock time and date at job start Mon Mar 30 2020 02:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38071 * 120.04393 * 2 1 4 4 C 1.38302 * 120.08861 * 179.97438 * 3 2 1 5 5 C 1.50704 * 119.90902 * 180.02562 * 4 3 2 6 6 F 1.39899 * 109.47304 * 299.99726 * 5 4 3 7 7 F 1.39898 * 109.47401 * 59.99953 * 5 4 3 8 8 C 1.38350 * 120.17986 * 359.74542 * 4 3 2 9 9 C 1.38024 * 120.09107 * 0.50949 * 8 4 3 10 10 C 1.39053 * 120.04552 * 179.97438 * 2 1 3 11 11 N 1.39306 * 120.09042 * 0.04585 * 10 2 1 12 12 C 1.36839 * 119.99760 * 179.97438 * 11 10 2 13 13 H 1.07998 * 120.00695 * 359.97438 * 12 11 10 14 14 C 1.38800 * 119.99571 * 180.02562 * 12 11 10 15 15 N 1.31584 * 120.00187 * 359.97438 * 14 12 11 16 16 Si 1.86806 * 119.99804 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47248 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47441 * 119.99797 * 16 14 12 19 19 H 1.48500 * 109.46707 * 239.99575 * 16 14 12 20 20 H 1.08993 * 109.47659 * 270.02660 * 1 2 3 21 21 H 1.09002 * 109.47123 * 30.02501 * 1 2 3 22 22 H 1.08999 * 109.46960 * 150.01942 * 1 2 3 23 23 H 1.08010 * 119.95451 * 359.95012 * 3 2 1 24 24 H 1.08999 * 109.47307 * 180.02562 * 5 4 3 25 25 H 1.08004 * 119.95756 * 180.25190 * 8 4 3 26 26 H 1.08002 * 120.05021 * 179.77457 * 9 8 4 27 27 H 0.96996 * 119.99352 * 359.97438 * 11 10 2 28 28 H 0.97005 * 120.00446 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1952 0.0000 4 6 3.5813 1.1963 0.0005 5 6 4.3318 2.5032 0.0011 6 9 3.9926 3.2362 -1.1411 7 9 3.9917 3.2358 1.1434 8 6 4.2778 0.0009 0.0064 9 6 3.5943 -1.1983 0.0011 10 6 2.2033 -1.2037 0.0005 11 7 1.5096 -2.4118 0.0001 12 6 2.1967 -3.5952 0.0001 13 1 3.2766 -3.5927 0.0000 14 6 1.5055 -4.7988 -0.0008 15 7 0.1896 -4.8019 -0.0012 16 14 2.4433 -6.4144 -0.0016 17 1 3.9027 -6.1396 -0.0016 18 1 2.0862 -7.1947 1.2103 19 1 2.0867 -7.1932 -1.2146 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3633 -0.8902 -0.5135 23 1 1.6582 2.1306 -0.0008 24 1 5.4039 2.3066 0.0010 25 1 5.3578 0.0059 0.0109 26 1 4.1387 -2.1311 0.0020 27 1 0.5397 -2.4140 -0.0002 28 1 -0.2935 -5.6432 -0.0023 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260164682.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:21 Heat of formation + Delta-G solvation = -102.443279 kcal Electronic energy + Delta-G solvation = -15110.681050 eV Core-core repulsion = 12181.915865 eV Total energy + Delta-G solvation = -2928.765185 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.70681 -47.71322 -40.35635 -36.96522 -34.20266 -33.23246 -30.81286 -27.92698 -27.29490 -25.30256 -22.88932 -21.52438 -19.67402 -18.32666 -17.94235 -17.88251 -17.55213 -16.61975 -15.97056 -15.01886 -14.86791 -14.77871 -14.61465 -14.31741 -14.12990 -13.80903 -13.44368 -13.40047 -13.08751 -12.84952 -12.83830 -12.37135 -12.06584 -11.98107 -11.50393 -11.48691 -10.64939 -9.49606 -8.57043 -8.51383 -5.75722 0.70232 0.75517 1.41887 1.46084 1.54927 2.25835 2.80193 3.13668 3.29806 3.40815 3.60490 3.90573 4.20573 4.28659 4.40056 4.47952 4.69872 4.82187 4.92413 4.93202 5.23027 5.31075 5.41757 5.60724 5.78215 5.82040 5.89001 6.34252 6.78977 7.45567 7.58970 8.67041 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.046575 B = 0.006406 C = 0.005843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.034887 B = 4369.804193 C = 4791.047801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.222 4.222 3 C -0.031 4.031 4 C -0.296 4.296 5 C 0.326 3.674 6 F -0.220 7.220 7 F -0.220 7.220 8 C -0.025 4.025 9 C -0.242 4.242 10 C 0.201 3.799 11 N -0.576 5.576 12 C -0.320 4.320 13 H 0.108 0.892 14 C -0.030 4.030 15 N -0.930 5.930 16 Si 0.999 3.001 17 H -0.256 1.256 18 H -0.279 1.279 19 H -0.279 1.279 20 H 0.060 0.940 21 H 0.078 0.922 22 H 0.042 0.958 23 H 0.120 0.880 24 H 0.148 0.852 25 H 0.149 0.851 26 H 0.116 0.884 27 H 0.394 0.606 28 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.648 8.310 0.009 10.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.228 4.228 3 C -0.050 4.050 4 C -0.301 4.301 5 C 0.273 3.727 6 F -0.201 7.201 7 F -0.201 7.201 8 C -0.045 4.045 9 C -0.266 4.266 10 C 0.081 3.919 11 N -0.180 5.180 12 C -0.450 4.450 13 H 0.126 0.874 14 C -0.229 4.229 15 N -0.569 5.569 16 Si 0.822 3.178 17 H -0.179 1.179 18 H -0.205 1.205 19 H -0.205 1.205 20 H 0.078 0.922 21 H 0.097 0.903 22 H 0.061 0.939 23 H 0.138 0.862 24 H 0.165 0.835 25 H 0.167 0.833 26 H 0.134 0.866 27 H 0.229 0.771 28 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.507 7.871 0.008 10.212 hybrid contribution -0.625 -0.902 0.001 1.097 sum 5.882 6.969 0.010 9.120 Atomic orbital electron populations 1.20446 0.91167 1.01847 1.01483 1.19305 0.96134 0.91590 1.15761 1.20455 0.93556 0.96304 0.94729 1.19832 0.94469 0.94286 1.21467 1.20471 1.00344 0.82014 0.69886 1.92940 1.94799 1.79960 1.52407 1.92940 1.94776 1.79987 1.52411 1.20714 0.99940 0.90065 0.93743 1.20573 0.92126 0.98600 1.15288 1.18237 0.92614 0.85913 0.95094 1.41199 1.08042 1.02457 1.66329 1.20113 0.93540 0.83488 1.47814 0.87445 1.26194 0.96543 1.03012 0.97104 1.69791 1.07500 1.29116 1.50456 0.84754 0.78659 0.76648 0.77698 1.17944 1.20484 1.20500 0.92153 0.90302 0.93900 0.86180 0.83452 0.83305 0.86575 0.77090 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.29 9.58 71.24 0.68 -2.61 15 2 C -0.22 -8.89 5.90 -19.71 -0.12 -9.00 15 3 C -0.03 -1.12 9.24 22.25 0.21 -0.92 15 4 C -0.30 -9.77 5.38 -19.82 -0.11 -9.87 15 5 C 0.33 8.73 5.45 71.24 0.39 9.12 15 6 F -0.22 -6.49 17.26 44.97 0.78 -5.71 15 7 F -0.22 -6.49 17.26 44.97 0.78 -5.72 15 8 C -0.03 -0.84 9.66 22.25 0.21 -0.62 15 9 C -0.24 -9.79 9.30 22.43 0.21 -9.58 15 10 C 0.20 9.01 6.60 38.36 0.25 9.26 15 11 N -0.58 -28.70 5.34 -184.29 -0.98 -29.69 15 12 C -0.32 -16.41 9.56 84.05 0.80 -15.60 15 13 H 0.11 5.23 5.68 -2.91 -0.02 5.22 15 14 C -0.03 -1.51 5.50 84.86 0.47 -1.04 15 15 N -0.93 -50.24 13.05 21.65 0.28 -49.95 15 16 Si 1.00 40.19 29.55 68.60 2.03 42.22 15 17 H -0.26 -9.67 7.11 99.48 0.71 -8.97 15 18 H -0.28 -11.10 7.11 99.48 0.71 -10.40 15 19 H -0.28 -11.11 7.11 99.48 0.71 -10.41 15 20 H 0.06 2.05 8.14 -2.39 -0.02 2.03 15 21 H 0.08 2.37 8.09 -2.39 -0.02 2.35 15 22 H 0.04 1.63 6.55 -2.39 -0.02 1.62 15 23 H 0.12 3.93 8.06 -2.91 -0.02 3.90 15 24 H 0.15 2.70 7.87 -2.39 -0.02 2.68 15 25 H 0.15 3.60 7.94 -2.91 -0.02 3.58 15 26 H 0.12 4.72 5.96 -2.91 -0.02 4.70 15 27 H 0.39 20.17 5.88 -92.71 -0.55 19.62 15 28 H 0.28 14.01 8.31 -92.70 -0.77 13.24 15 Total: -1.00 -57.09 252.42 6.53 -50.56 By element: Atomic # 1 Polarization: 28.51 SS G_CDS: 0.65 Total: 29.16 kcal Atomic # 6 Polarization: -33.88 SS G_CDS: 3.00 Total: -30.88 kcal Atomic # 7 Polarization: -78.94 SS G_CDS: -0.70 Total: -79.64 kcal Atomic # 9 Polarization: -12.98 SS G_CDS: 1.55 Total: -11.43 kcal Atomic # 14 Polarization: 40.19 SS G_CDS: 2.03 Total: 42.22 kcal Total: -57.09 6.53 -50.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260164682.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.882 kcal (2) G-P(sol) polarization free energy of solvation -57.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds