Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38262 * 119.96204 * 2 1 4 4 C 1.38363 * 120.00079 * 180.02562 * 3 2 1 5 5 F 1.35101 * 120.03703 * 180.02562 * 4 3 2 6 6 C 1.38697 * 119.92926 * 359.73923 * 4 3 2 7 7 F 1.35095 * 120.03645 * 180.27611 * 6 4 3 8 8 C 1.38372 * 119.92540 * 0.53354 * 6 4 3 9 9 C 1.50696 * 119.99758 * 179.72241 * 8 6 4 10 10 H 1.09006 * 109.47511 * 39.72435 * 9 8 6 11 11 N 1.46894 * 109.47259 * 159.72776 * 9 8 6 12 12 C 1.50706 * 109.47259 * 279.72429 * 9 8 6 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 C 1.38209 * 119.96776 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.46704 * 269.97661 * 1 2 3 22 22 H 1.08994 * 109.47000 * 29.97702 * 1 2 3 23 23 H 1.08996 * 109.46473 * 149.98255 * 1 2 3 24 24 H 1.08000 * 119.99653 * 359.97438 * 3 2 1 25 25 H 1.00907 * 110.99654 * 296.04440 * 11 9 8 26 26 H 1.00901 * 111.00146 * 59.99612 * 11 9 8 27 27 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 28 28 H 1.08001 * 119.96545 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1978 0.0000 4 6 3.5812 1.1988 -0.0005 5 9 4.2567 2.3688 0.0000 6 6 4.2740 -0.0027 0.0044 7 9 5.6249 -0.0043 0.0095 8 6 3.5800 -1.1998 -0.0013 9 6 4.3311 -2.5062 -0.0023 10 1 5.1952 -2.4291 0.6577 11 7 3.4473 -3.5796 0.4715 12 6 4.7945 -2.8183 -1.4020 13 1 4.5680 -2.1383 -2.2100 14 6 5.5074 -3.9717 -1.6511 15 7 5.7827 -4.8000 -0.6673 16 14 6.0811 -4.3588 -3.3862 17 1 5.0374 -5.1482 -4.0882 18 1 6.3220 -3.0917 -4.1221 19 1 7.3400 -5.1443 -3.3276 20 6 2.1974 -1.1973 -0.0005 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5134 23 1 -0.3632 -0.8898 -0.5141 24 1 1.6569 2.1328 -0.0004 25 1 3.1745 -3.4263 1.4309 26 1 2.6381 -3.6712 -0.1243 27 1 5.4845 -4.5992 0.2336 28 1 1.6563 -2.1320 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260187189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = -75.559295 kcal Electronic energy + Delta-G solvation = -15578.831986 eV Core-core repulsion = 12651.232577 eV Total energy + Delta-G solvation = -2927.599408 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -48.98154 -47.97450 -39.01647 -35.21598 -32.11984 -31.48558 -29.34295 -26.73834 -25.78766 -23.26815 -21.53864 -20.31551 -17.37912 -16.99510 -16.82440 -16.27028 -15.79110 -14.76240 -14.38285 -14.32727 -13.93819 -13.67896 -13.54912 -13.51329 -12.97504 -12.52692 -12.06675 -11.75086 -11.49091 -11.17509 -10.93876 -10.71462 -10.30301 -10.05880 -9.06343 -8.40545 -8.28161 -8.03134 -7.68697 -6.23808 -4.07691 1.29566 1.43544 3.46223 3.50449 3.65800 3.72735 4.21100 4.58067 4.68157 4.91045 5.09272 5.28920 5.31469 5.41679 5.56882 5.60757 5.84819 5.90987 6.12105 6.26195 6.30790 6.48141 6.64309 7.04912 7.19121 7.85874 8.16122 8.54526 8.62961 8.98318 9.75541 11.16607 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.028644 B = 0.009233 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.298692 B = 3031.990891 C = 3465.980961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.071 4.071 3 C -0.155 4.155 4 C 0.063 3.937 5 F -0.138 7.138 6 C 0.065 3.935 7 F -0.123 7.123 8 C -0.070 4.070 9 C 0.240 3.760 10 H 0.048 0.952 11 N -0.827 5.827 12 C -0.608 4.608 13 H 0.047 0.953 14 C 0.041 3.959 15 N -0.887 5.887 16 Si 1.068 2.932 17 H -0.288 1.288 18 H -0.290 1.290 19 H -0.284 1.284 20 C -0.117 4.117 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.135 0.865 25 H 0.305 0.695 26 H 0.328 0.672 27 H 0.290 0.710 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.447 9.004 2.127 13.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.072 4.072 3 C -0.173 4.173 4 C 0.043 3.957 5 F -0.116 7.116 6 C 0.045 3.955 7 F -0.101 7.101 8 C -0.073 4.073 9 C 0.130 3.870 10 H 0.065 0.935 11 N -0.355 5.355 12 C -0.647 4.647 13 H 0.065 0.935 14 C -0.169 4.169 15 N -0.521 5.521 16 Si 0.897 3.103 17 H -0.215 1.215 18 H -0.217 1.217 19 H -0.210 1.210 20 C -0.135 4.135 21 H 0.089 0.911 22 H 0.085 0.915 23 H 0.089 0.911 24 H 0.153 0.847 25 H 0.116 0.884 26 H 0.142 0.858 27 H 0.102 0.898 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.913 7.418 1.111 10.903 hybrid contribution -1.182 2.274 0.950 2.733 sum -9.094 9.692 2.061 13.449 Atomic orbital electron populations 1.20749 0.90528 1.02964 1.02334 1.19688 0.96266 0.92103 0.99129 1.20664 0.90964 0.99257 1.06465 1.17733 0.90575 0.80130 1.07248 1.91469 1.80376 1.45513 1.94271 1.17559 0.77962 0.92676 1.07346 1.91509 1.27708 1.97138 1.93783 1.21642 0.94640 0.97440 0.93620 1.18365 0.90324 0.80016 0.98261 0.93468 1.59399 1.22671 1.49422 1.04043 1.21604 1.41072 1.10481 0.91533 0.93460 1.25645 0.93626 0.92523 1.05139 1.70533 1.41792 1.36781 1.03002 0.83583 0.76734 0.75598 0.74429 1.21500 1.21655 1.20979 1.20830 0.92928 0.97894 1.01870 0.91071 0.91516 0.91137 0.84697 0.88420 0.85768 0.89754 0.85030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.13 10.01 36.01 0.36 -0.77 15 2 C -0.07 -1.04 5.88 -104.62 -0.62 -1.66 15 3 C -0.15 -2.34 9.68 -39.53 -0.38 -2.72 15 4 C 0.06 1.16 7.31 -39.37 -0.29 0.87 15 5 F -0.14 -2.49 17.18 2.25 0.04 -2.45 15 6 C 0.07 1.38 7.24 -39.36 -0.29 1.10 15 7 F -0.12 -2.85 16.57 2.25 0.04 -2.81 15 8 C -0.07 -1.47 5.02 -104.57 -0.52 -1.99 15 9 C 0.24 5.84 2.19 -70.02 -0.15 5.69 15 10 H 0.05 1.28 7.80 -51.93 -0.41 0.88 15 11 N -0.83 -18.03 7.27 -6.65 -0.05 -18.08 15 12 C -0.61 -16.91 8.71 -34.44 -0.30 -17.21 15 13 H 0.05 1.35 7.74 -52.48 -0.41 0.94 15 14 C 0.04 1.16 5.39 -17.82 -0.10 1.07 15 15 N -0.89 -26.57 13.51 55.43 0.75 -25.82 15 16 Si 1.07 25.38 29.90 -169.99 -5.08 20.30 15 17 H -0.29 -6.59 7.11 56.52 0.40 -6.19 15 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 20 C -0.12 -2.00 8.90 -39.59 -0.35 -2.36 15 21 H 0.07 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.07 0.60 8.08 -51.93 -0.42 0.18 15 23 H 0.07 0.69 8.08 -51.93 -0.42 0.27 15 24 H 0.14 1.63 8.06 -52.49 -0.42 1.20 15 25 H 0.30 5.74 9.06 -39.29 -0.36 5.38 15 26 H 0.33 6.74 7.28 -39.29 -0.29 6.45 15 27 H 0.29 8.64 6.39 -40.82 -0.26 8.38 15 28 H 0.13 2.06 6.24 -52.49 -0.33 1.73 15 LS Contribution 252.95 15.07 3.81 3.81 Total: -1.00 -30.56 252.95 -5.65 -36.21 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -2.52 Total: 6.83 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: -2.64 Total: -17.99 kcal Atomic # 7 Polarization: -44.60 SS G_CDS: 0.70 Total: -43.90 kcal Atomic # 9 Polarization: -5.34 SS G_CDS: 0.08 Total: -5.26 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -30.56 -5.65 -36.21 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260187189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.349 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds