Wall clock time and date at job start Mon Mar 30 2020 02:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38262 * 119.96204 * 2 1 4 4 C 1.38363 * 120.00079 * 180.02562 * 3 2 1 5 5 F 1.35101 * 120.03703 * 180.02562 * 4 3 2 6 6 C 1.38697 * 119.92926 * 359.73923 * 4 3 2 7 7 F 1.35095 * 120.03645 * 180.27611 * 6 4 3 8 8 C 1.38372 * 119.92540 * 0.53354 * 6 4 3 9 9 C 1.50696 * 119.99758 * 179.72241 * 8 6 4 10 10 H 1.09006 * 109.47511 * 39.72435 * 9 8 6 11 11 N 1.46894 * 109.47259 * 159.72776 * 9 8 6 12 12 C 1.50706 * 109.47259 * 279.72429 * 9 8 6 13 13 H 1.08005 * 119.99758 * 0.02562 * 12 9 8 14 14 C 1.37871 * 120.00102 * 180.02562 * 12 9 8 15 15 N 1.31516 * 120.00217 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99766 * 179.97438 * 14 12 9 17 17 H 1.48501 * 109.47483 * 269.99808 * 16 14 12 18 18 H 1.48499 * 109.47134 * 30.00322 * 16 14 12 19 19 H 1.48507 * 109.46904 * 150.00145 * 16 14 12 20 20 C 1.38209 * 119.96776 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.46704 * 269.97661 * 1 2 3 22 22 H 1.08994 * 109.47000 * 29.97702 * 1 2 3 23 23 H 1.08996 * 109.46473 * 149.98255 * 1 2 3 24 24 H 1.08000 * 119.99653 * 359.97438 * 3 2 1 25 25 H 1.00907 * 110.99654 * 296.04440 * 11 9 8 26 26 H 1.00901 * 111.00146 * 59.99612 * 11 9 8 27 27 H 0.97001 * 119.99646 * 359.97438 * 15 14 12 28 28 H 1.08001 * 119.96545 * 359.97438 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1978 0.0000 4 6 3.5812 1.1988 -0.0005 5 9 4.2567 2.3688 0.0000 6 6 4.2740 -0.0027 0.0044 7 9 5.6249 -0.0043 0.0095 8 6 3.5800 -1.1998 -0.0013 9 6 4.3311 -2.5062 -0.0023 10 1 5.1952 -2.4291 0.6577 11 7 3.4473 -3.5796 0.4715 12 6 4.7945 -2.8183 -1.4020 13 1 4.5680 -2.1383 -2.2100 14 6 5.5074 -3.9717 -1.6511 15 7 5.7827 -4.8000 -0.6673 16 14 6.0811 -4.3588 -3.3862 17 1 5.0374 -5.1482 -4.0882 18 1 6.3220 -3.0917 -4.1221 19 1 7.3400 -5.1443 -3.3276 20 6 2.1974 -1.1973 -0.0005 21 1 -0.3633 -0.0004 1.0277 22 1 -0.3633 0.8901 -0.5134 23 1 -0.3632 -0.8898 -0.5141 24 1 1.6569 2.1328 -0.0004 25 1 3.1745 -3.4263 1.4309 26 1 2.6381 -3.6712 -0.1243 27 1 5.4845 -4.5992 0.2336 28 1 1.6563 -2.1320 -0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260187189.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:01 Heat of formation + Delta-G solvation = -95.656254 kcal Electronic energy + Delta-G solvation = -15579.703455 eV Core-core repulsion = 12651.232577 eV Total energy + Delta-G solvation = -2928.470878 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.48893 -49.56452 -40.43095 -36.98747 -33.81484 -33.04829 -30.87708 -28.15436 -27.43479 -25.07113 -22.98645 -21.92734 -19.07271 -18.82569 -18.29698 -17.73216 -17.33266 -16.55637 -16.01042 -15.87661 -15.65967 -15.40729 -15.01718 -14.48608 -14.31097 -14.09044 -13.89288 -13.08261 -12.77315 -12.70269 -12.50734 -12.40293 -12.06600 -11.91441 -10.94815 -10.53948 -9.80808 -9.54302 -9.45140 -8.44992 -6.31699 -0.10436 0.04458 1.53170 1.62137 1.79323 2.33487 2.61309 2.81017 3.25155 3.34217 3.62091 3.73413 3.99624 4.03098 4.21213 4.57228 4.72777 4.72903 4.84810 4.88138 4.97000 5.24205 5.26603 5.41117 5.77238 5.86157 6.12746 6.56543 6.71668 6.97866 7.58820 8.92018 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.028644 B = 0.009233 C = 0.008077 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 977.298692 B = 3031.990891 C = 3465.980961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.053 4.053 3 C -0.136 4.136 4 C 0.058 3.942 5 F -0.139 7.139 6 C 0.023 3.977 7 F -0.149 7.149 8 C -0.096 4.096 9 C 0.246 3.754 10 H 0.004 0.996 11 N -0.831 5.831 12 C -0.618 4.618 13 H 0.033 0.967 14 C -0.007 4.007 15 N -0.914 5.914 16 Si 1.112 2.888 17 H -0.269 1.269 18 H -0.283 1.283 19 H -0.283 1.283 20 C -0.116 4.116 21 H 0.093 0.907 22 H 0.090 0.910 23 H 0.079 0.921 24 H 0.178 0.822 25 H 0.323 0.677 26 H 0.338 0.662 27 H 0.279 0.721 28 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.357 10.109 1.554 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.053 4.053 3 C -0.154 4.154 4 C 0.038 3.962 5 F -0.118 7.118 6 C 0.002 3.998 7 F -0.128 7.128 8 C -0.099 4.099 9 C 0.136 3.864 10 H 0.022 0.978 11 N -0.361 5.361 12 C -0.656 4.656 13 H 0.051 0.949 14 C -0.211 4.211 15 N -0.549 5.549 16 Si 0.935 3.065 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.134 4.134 21 H 0.112 0.888 22 H 0.109 0.891 23 H 0.098 0.902 24 H 0.195 0.805 25 H 0.136 0.864 26 H 0.152 0.848 27 H 0.090 0.910 28 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -10.847 8.534 0.550 13.813 hybrid contribution -0.389 2.039 1.191 2.393 sum -11.236 10.573 1.741 15.527 Atomic orbital electron populations 1.20894 0.86566 1.04692 1.04239 1.20203 0.98762 0.90590 0.95733 1.21187 0.89385 1.01342 1.03528 1.17924 0.91727 0.79065 1.07509 1.91461 1.80764 1.45248 1.94318 1.17992 0.77191 0.94332 1.10276 1.91424 1.29689 1.97346 1.94368 1.21345 0.96189 0.95650 0.96760 1.17879 0.90129 0.82711 0.95660 0.97792 1.59079 1.22863 1.48812 1.05329 1.21880 1.40886 1.09897 0.92935 0.94899 1.26978 0.93546 0.92653 1.07972 1.70644 1.43486 1.37803 1.02983 0.83007 0.76816 0.75929 0.70772 1.19462 1.20843 1.20899 1.21055 0.91259 0.99951 1.01150 0.88832 0.89103 0.90228 0.80478 0.86413 0.84754 0.90958 0.83576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.61 10.01 71.24 0.71 -0.90 15 2 C -0.05 -1.32 5.88 -19.86 -0.12 -1.44 15 3 C -0.14 -3.58 9.68 22.31 0.22 -3.37 15 4 C 0.06 2.05 7.31 22.41 0.16 2.21 15 5 F -0.14 -4.91 17.18 44.97 0.77 -4.14 15 6 C 0.02 0.98 7.24 22.41 0.16 1.14 15 7 F -0.15 -7.37 16.57 44.97 0.75 -6.62 15 8 C -0.10 -4.08 5.02 -19.83 -0.10 -4.18 15 9 C 0.25 12.47 2.19 43.42 0.09 12.56 15 10 H 0.00 0.25 7.80 -2.38 -0.02 0.23 15 11 N -0.83 -36.68 7.27 -174.95 -1.27 -37.95 15 12 C -0.62 -35.35 8.71 25.60 0.22 -35.13 15 13 H 0.03 1.92 7.74 -2.91 -0.02 1.90 15 14 C -0.01 -0.43 5.39 84.65 0.46 0.03 15 15 N -0.91 -56.16 13.51 21.45 0.29 -55.87 15 16 Si 1.11 51.60 29.90 68.60 2.05 53.65 15 17 H -0.27 -11.60 7.11 99.48 0.71 -10.89 15 18 H -0.28 -12.62 7.11 99.48 0.71 -11.91 15 19 H -0.28 -13.03 7.11 99.48 0.71 -12.32 15 20 C -0.12 -3.75 8.90 22.27 0.20 -3.55 15 21 H 0.09 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.09 1.02 8.08 -2.39 -0.02 1.00 15 23 H 0.08 1.13 8.08 -2.39 -0.02 1.11 15 24 H 0.18 3.21 8.06 -2.91 -0.02 3.18 15 25 H 0.32 12.22 9.06 -89.69 -0.81 11.41 15 26 H 0.34 13.70 7.28 -89.69 -0.65 13.05 15 27 H 0.28 17.27 6.39 -92.71 -0.59 16.67 15 28 H 0.15 4.22 6.24 -2.91 -0.02 4.20 15 Total: -1.00 -69.36 252.95 4.52 -64.84 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -0.08 Total: 18.73 kcal Atomic # 6 Polarization: -34.64 SS G_CDS: 2.01 Total: -32.63 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -0.98 Total: -93.83 kcal Atomic # 9 Polarization: -12.28 SS G_CDS: 1.52 Total: -10.76 kcal Atomic # 14 Polarization: 51.60 SS G_CDS: 2.05 Total: 53.65 kcal Total: -69.36 4.52 -64.84 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260187189.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.812 kcal (2) G-P(sol) polarization free energy of solvation -69.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds