Wall clock time and date at job start Mon Mar 30 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 F 1.39903 * 109.47369 * 240.00231 * 2 1 3 5 5 C 1.50698 * 109.47036 * 119.99894 * 2 1 3 6 6 C 1.38344 * 119.90090 * 244.99822 * 5 2 1 7 7 C 1.38064 * 120.13378 * 179.97438 * 6 5 2 8 8 C 1.39042 * 119.93334 * 0.02562 * 7 6 5 9 9 N 1.39379 * 120.09597 * 180.02562 * 8 7 6 10 10 C 1.36828 * 119.99946 * 359.97438 * 9 8 7 11 11 H 1.08002 * 120.00450 * 0.02562 * 10 9 8 12 12 C 1.38790 * 119.99954 * 179.72315 * 10 9 8 13 13 N 1.31604 * 119.99595 * 0.27453 * 12 10 9 14 14 Si 1.86789 * 120.00266 * 180.27643 * 12 10 9 15 15 H 1.48503 * 109.47675 * 89.99923 * 14 12 10 16 16 H 1.48495 * 109.47437 * 210.00276 * 14 12 10 17 17 H 1.48503 * 109.47180 * 329.99789 * 14 12 10 18 18 C 1.39262 * 119.80323 * 0.27006 * 8 7 6 19 19 F 1.35105 * 120.06674 * 179.73245 * 18 8 7 20 20 C 1.38261 * 119.86406 * 359.45242 * 18 8 7 21 21 H 1.08996 * 109.47400 * 300.00214 * 1 2 3 22 22 H 1.09008 * 109.47194 * 60.00293 * 1 2 3 23 23 H 1.08997 * 109.46885 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.93209 * 0.02562 * 6 5 2 25 25 H 1.07994 * 120.03608 * 180.02562 * 7 6 5 26 26 H 0.97000 * 120.00212 * 179.97438 * 9 8 7 27 27 H 0.97005 * 119.99709 * 179.97438 * 13 12 10 28 28 H 1.08001 * 119.96877 * 180.27369 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 6 2.7400 -0.0097 2.1907 7 6 3.2020 -0.6556 3.3201 8 6 2.9559 -2.0132 3.4925 9 7 3.4202 -2.6685 4.6317 10 6 4.1198 -1.9759 5.5820 11 1 4.3119 -0.9214 5.4497 12 6 4.5772 -2.6272 6.7190 13 7 4.3427 -3.9121 6.8805 14 14 5.5256 -1.6802 8.0200 15 1 4.5771 -1.1278 9.0202 16 1 6.4830 -2.5918 8.6965 17 1 6.2710 -0.5679 7.3777 18 6 2.2485 -2.7172 2.5213 19 9 2.0110 -4.0376 2.6809 20 6 1.7847 -2.0609 1.3962 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 2.9308 1.0449 2.0569 25 1 3.7540 -0.1070 4.0689 26 1 3.2474 -3.6155 4.7507 27 1 4.6627 -4.3674 7.6750 28 1 1.2321 -2.6043 0.6441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260193468.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:40 Heat of formation + Delta-G solvation = -82.392027 kcal Electronic energy + Delta-G solvation = -15124.248394 eV Core-core repulsion = 12196.352696 eV Total energy + Delta-G solvation = -2927.895698 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -47.77259 -47.18847 -38.33601 -35.54888 -32.69393 -31.19203 -29.64857 -27.62629 -25.10341 -22.69099 -21.93103 -20.21462 -17.94811 -17.02347 -16.40952 -15.71185 -15.00956 -14.74762 -14.70799 -14.47524 -14.42040 -13.64428 -13.05940 -12.62405 -12.52874 -12.08044 -11.97882 -11.93043 -11.57862 -11.27197 -10.96567 -10.70047 -10.51167 -10.35016 -10.23359 -9.87956 -8.89881 -7.97522 -6.86025 -6.73942 -3.90112 2.18905 2.23166 3.06550 3.07755 3.11280 3.90810 4.38150 4.96820 5.00007 5.03320 5.07522 5.17560 5.44451 5.47718 5.71471 5.78153 5.99498 6.15446 6.27494 6.43387 6.71646 6.87141 6.91703 7.14576 7.25810 7.39002 7.52614 7.91909 8.55887 9.11364 9.31522 10.41437 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.045554 B = 0.006578 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.509538 B = 4255.347857 C = 4690.677777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.152 3.848 3 H 0.078 0.922 4 F -0.221 7.221 5 C -0.247 4.247 6 C -0.046 4.046 7 C -0.210 4.210 8 C 0.184 3.816 9 N -0.542 5.542 10 C -0.304 4.304 11 H 0.107 0.893 12 C 0.022 3.978 13 N -0.881 5.881 14 Si 0.937 3.063 15 H -0.274 1.274 16 H -0.280 1.280 17 H -0.266 1.266 18 C -0.042 4.042 19 F -0.158 7.158 20 C -0.062 4.062 21 H 0.073 0.927 22 H 0.057 0.943 23 H 0.064 0.936 24 H 0.109 0.891 25 H 0.124 0.876 26 H 0.404 0.596 27 H 0.279 0.721 28 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.863 6.638 -6.681 10.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.116 3.884 3 H 0.096 0.904 4 F -0.202 7.202 5 C -0.252 4.252 6 C -0.066 4.066 7 C -0.234 4.234 8 C 0.059 3.941 9 N -0.141 5.141 10 C -0.434 4.434 11 H 0.125 0.875 12 C -0.183 4.183 13 N -0.517 5.517 14 Si 0.763 3.237 15 H -0.200 1.200 16 H -0.205 1.205 17 H -0.191 1.191 18 C -0.067 4.067 19 F -0.138 7.138 20 C -0.082 4.082 21 H 0.092 0.908 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.127 0.873 25 H 0.142 0.858 26 H 0.240 0.760 27 H 0.089 0.911 28 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.623 6.405 -6.204 9.625 hybrid contribution 0.365 -0.404 0.769 0.943 sum -3.258 6.001 -5.435 8.727 Atomic orbital electron populations 1.22374 0.94922 1.03263 1.02417 1.20022 0.93733 0.94565 0.80043 0.90424 1.92791 1.90447 1.83765 1.53204 1.19015 1.12569 0.94278 0.99305 1.20457 0.95144 0.98046 0.92916 1.20225 1.09954 0.92586 1.00673 1.17857 0.95895 0.92648 0.87677 1.41068 1.46796 1.11278 1.14930 1.19817 1.29820 0.95650 0.98114 0.87523 1.25423 0.98052 0.95965 0.98839 1.69711 1.44145 1.08720 1.29082 0.85735 0.79055 0.79007 0.79885 1.19993 1.20504 1.19076 1.16841 1.12559 0.78033 0.99316 1.91343 1.93887 1.32503 1.96028 1.20234 0.98681 0.94167 0.95106 0.90791 0.92376 0.91689 0.87303 0.85784 0.75990 0.91123 0.86846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 9.51 37.16 0.35 -1.76 15 2 C 0.15 2.23 4.17 -27.89 -0.12 2.11 15 3 H 0.08 0.97 7.88 -51.93 -0.41 0.56 15 4 F -0.22 -3.67 16.93 2.25 0.04 -3.63 15 5 C -0.25 -4.35 5.05 -104.56 -0.53 -4.88 15 6 C -0.05 -0.81 9.66 -39.61 -0.38 -1.20 15 7 C -0.21 -4.33 9.30 -39.35 -0.37 -4.69 15 8 C 0.18 4.24 6.63 -83.75 -0.55 3.68 15 9 N -0.54 -13.63 5.43 -9.55 -0.05 -13.68 15 10 C -0.30 -7.69 9.56 -15.12 -0.14 -7.83 15 11 H 0.11 2.53 5.68 -52.49 -0.30 2.23 15 12 C 0.02 0.55 5.50 -17.45 -0.10 0.46 15 13 N -0.88 -23.38 13.05 55.49 0.72 -22.65 15 14 Si 0.94 19.25 29.55 -169.99 -5.02 14.22 15 15 H -0.27 -5.58 7.11 56.52 0.40 -5.17 15 16 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 17 H -0.27 -5.30 7.11 56.52 0.40 -4.90 15 18 C -0.04 -0.93 7.32 -39.19 -0.29 -1.21 15 19 F -0.16 -3.58 16.64 2.25 0.04 -3.54 15 20 C -0.06 -1.20 9.11 -39.55 -0.36 -1.56 15 21 H 0.07 0.85 8.14 -51.93 -0.42 0.42 15 22 H 0.06 0.60 8.14 -51.92 -0.42 0.18 15 23 H 0.06 0.83 7.69 -51.93 -0.40 0.43 15 24 H 0.11 1.58 7.95 -52.49 -0.42 1.16 15 25 H 0.12 2.50 5.96 -52.49 -0.31 2.18 15 26 H 0.40 10.62 7.37 -40.82 -0.30 10.32 15 27 H 0.28 6.93 8.31 -40.82 -0.34 6.59 15 28 H 0.11 2.01 7.87 -52.49 -0.41 1.60 15 LS Contribution 253.74 15.07 3.82 3.82 Total: -1.00 -26.62 253.74 -5.46 -32.09 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -2.53 Total: 10.26 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.48 Total: -16.88 kcal Atomic # 7 Polarization: -37.01 SS G_CDS: 0.67 Total: -36.34 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.08 Total: -7.18 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.02 Total: 14.22 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.62 -5.46 -32.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260193468.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.303 kcal (2) G-P(sol) polarization free energy of solvation -26.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds