Wall clock time and date at job start Mon Mar 30 2020 03:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47345 * 2 1 4 4 F 1.39903 * 109.47369 * 240.00231 * 2 1 3 5 5 C 1.50698 * 109.47036 * 119.99894 * 2 1 3 6 6 C 1.38344 * 119.90090 * 244.99822 * 5 2 1 7 7 C 1.38064 * 120.13378 * 179.97438 * 6 5 2 8 8 C 1.39042 * 119.93334 * 0.02562 * 7 6 5 9 9 N 1.39379 * 120.09597 * 180.02562 * 8 7 6 10 10 C 1.36828 * 119.99946 * 359.97438 * 9 8 7 11 11 H 1.08002 * 120.00450 * 0.02562 * 10 9 8 12 12 C 1.38790 * 119.99954 * 179.72315 * 10 9 8 13 13 N 1.31604 * 119.99595 * 0.27453 * 12 10 9 14 14 Si 1.86789 * 120.00266 * 180.27643 * 12 10 9 15 15 H 1.48503 * 109.47675 * 89.99923 * 14 12 10 16 16 H 1.48495 * 109.47437 * 210.00276 * 14 12 10 17 17 H 1.48503 * 109.47180 * 329.99789 * 14 12 10 18 18 C 1.39262 * 119.80323 * 0.27006 * 8 7 6 19 19 F 1.35105 * 120.06674 * 179.73245 * 18 8 7 20 20 C 1.38261 * 119.86406 * 359.45242 * 18 8 7 21 21 H 1.08996 * 109.47400 * 300.00214 * 1 2 3 22 22 H 1.09008 * 109.47194 * 60.00293 * 1 2 3 23 23 H 1.08997 * 109.46885 * 179.97438 * 1 2 3 24 24 H 1.07999 * 119.93209 * 0.02562 * 6 5 2 25 25 H 1.07994 * 120.03608 * 180.02562 * 7 6 5 26 26 H 0.97000 * 120.00212 * 179.97438 * 9 8 7 27 27 H 0.97005 * 119.99709 * 179.97438 * 13 12 10 28 28 H 1.08001 * 119.96877 * 180.27369 * 20 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9964 -0.6595 -1.1423 5 6 2.0323 -0.7104 1.2305 6 6 2.7400 -0.0097 2.1907 7 6 3.2020 -0.6556 3.3201 8 6 2.9559 -2.0132 3.4925 9 7 3.4202 -2.6685 4.6317 10 6 4.1198 -1.9759 5.5820 11 1 4.3119 -0.9214 5.4497 12 6 4.5772 -2.6272 6.7190 13 7 4.3427 -3.9121 6.8805 14 14 5.5256 -1.6802 8.0200 15 1 4.5771 -1.1278 9.0202 16 1 6.4830 -2.5918 8.6965 17 1 6.2710 -0.5679 7.3777 18 6 2.2485 -2.7172 2.5213 19 9 2.0110 -4.0376 2.6809 20 6 1.7847 -2.0609 1.3962 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 2.9308 1.0449 2.0569 25 1 3.7540 -0.1070 4.0689 26 1 3.2474 -3.6155 4.7507 27 1 4.6627 -4.3674 7.6750 28 1 1.2321 -2.6043 0.6441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260193468.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:40 Heat of formation + Delta-G solvation = -96.774553 kcal Electronic energy + Delta-G solvation = -15124.872067 eV Core-core repulsion = 12196.352696 eV Total energy + Delta-G solvation = -2928.519371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.53792 -48.43909 -39.98599 -37.21319 -34.30463 -32.63441 -31.26451 -29.15027 -26.79911 -24.12360 -23.53022 -21.71739 -19.70862 -18.66916 -17.95039 -17.20421 -16.56510 -16.39574 -16.29411 -15.93610 -15.76692 -15.35115 -14.71800 -14.11806 -13.88064 -13.70058 -13.52486 -13.16737 -12.94417 -12.86496 -12.55272 -12.17148 -12.09319 -11.92241 -11.59171 -11.38297 -10.66115 -9.58804 -8.60478 -8.54218 -5.80305 0.54721 0.63596 1.41101 1.47593 1.54648 2.23713 2.73701 3.21721 3.25832 3.58149 3.82060 3.90073 4.03777 4.32094 4.42572 4.44998 4.67626 4.90887 5.06371 5.11671 5.23744 5.28495 5.31918 5.43133 5.61648 5.75836 5.84638 6.27538 6.71217 7.34377 7.47646 8.64033 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.045554 B = 0.006578 C = 0.005968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.509538 B = 4255.347857 C = 4690.677777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.147 3.853 3 H 0.113 0.887 4 F -0.231 7.231 5 C -0.223 4.223 6 C -0.036 4.036 7 C -0.216 4.216 8 C 0.167 3.833 9 N -0.578 5.578 10 C -0.321 4.321 11 H 0.116 0.884 12 C -0.033 4.033 13 N -0.931 5.931 14 Si 1.006 2.994 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.254 1.254 18 C -0.067 4.067 19 F -0.169 7.169 20 C -0.066 4.066 21 H 0.084 0.916 22 H 0.082 0.918 23 H 0.055 0.945 24 H 0.156 0.844 25 H 0.128 0.872 26 H 0.390 0.610 27 H 0.276 0.724 28 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.368 9.614 -8.435 13.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.112 3.888 3 H 0.131 0.869 4 F -0.212 7.212 5 C -0.228 4.228 6 C -0.055 4.055 7 C -0.241 4.241 8 C 0.047 3.953 9 N -0.180 5.180 10 C -0.450 4.450 11 H 0.134 0.866 12 C -0.232 4.232 13 N -0.570 5.570 14 Si 0.829 3.171 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.177 1.177 18 C -0.092 4.092 19 F -0.148 7.148 20 C -0.086 4.086 21 H 0.103 0.897 22 H 0.100 0.900 23 H 0.074 0.926 24 H 0.173 0.827 25 H 0.145 0.855 26 H 0.223 0.777 27 H 0.086 0.914 28 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.154 9.438 -8.028 13.068 hybrid contribution 0.345 -1.185 0.929 1.545 sum -3.809 8.253 -7.099 11.533 Atomic orbital electron populations 1.22367 0.92913 1.03298 1.04224 1.20330 0.95332 0.95414 0.77759 0.86916 1.92781 1.90723 1.84181 1.53562 1.19625 1.09492 0.93556 1.00115 1.20940 0.93221 1.00190 0.91198 1.20517 1.09942 0.91681 1.01921 1.18383 0.95648 0.93850 0.87387 1.41043 1.49858 1.10723 1.16397 1.20148 1.30168 0.96106 0.98601 0.86637 1.26358 0.99208 0.96767 1.00830 1.69837 1.46773 1.10429 1.29921 0.84708 0.77581 0.77734 0.77104 1.19610 1.20827 1.17747 1.17268 1.13597 0.77962 1.00378 1.91310 1.94039 1.33309 1.96185 1.20553 0.98343 0.95244 0.94415 0.89732 0.89956 0.92625 0.82679 0.85469 0.77659 0.91430 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.37 9.51 71.98 0.68 -2.68 15 2 C 0.15 3.55 4.17 29.85 0.12 3.67 15 3 H 0.11 2.04 7.88 -2.39 -0.02 2.02 15 4 F -0.23 -6.72 16.93 44.97 0.76 -5.96 15 5 C -0.22 -7.01 5.05 -19.82 -0.10 -7.11 15 6 C -0.04 -1.14 9.66 22.25 0.21 -0.93 15 7 C -0.22 -8.55 9.30 22.42 0.21 -8.35 15 8 C 0.17 7.78 6.63 38.38 0.25 8.03 15 9 N -0.58 -30.34 5.43 -184.14 -1.00 -31.34 15 10 C -0.32 -16.72 9.56 84.05 0.80 -15.92 15 11 H 0.12 5.54 5.68 -2.91 -0.02 5.52 15 12 C -0.03 -1.70 5.50 84.86 0.47 -1.23 15 13 N -0.93 -52.00 13.05 21.65 0.28 -51.72 15 14 Si 1.01 40.28 29.55 68.60 2.03 42.31 15 15 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 16 H -0.28 -11.28 7.11 99.48 0.71 -10.58 15 17 H -0.25 -9.46 7.11 99.48 0.71 -8.75 15 18 C -0.07 -2.95 7.32 22.52 0.16 -2.78 15 19 F -0.17 -7.90 16.64 44.97 0.75 -7.15 15 20 C -0.07 -2.42 9.11 22.29 0.20 -2.22 15 21 H 0.08 1.51 8.14 -2.39 -0.02 1.50 15 22 H 0.08 1.28 8.14 -2.38 -0.02 1.26 15 23 H 0.05 1.21 7.69 -2.39 -0.02 1.19 15 24 H 0.16 3.50 7.95 -2.91 -0.02 3.48 15 25 H 0.13 4.94 5.96 -2.91 -0.02 4.92 15 26 H 0.39 21.90 7.37 -92.71 -0.68 21.21 15 27 H 0.28 14.50 8.31 -92.70 -0.77 13.73 15 28 H 0.13 4.31 7.87 -2.91 -0.02 4.29 15 Total: -1.00 -59.74 253.74 6.35 -53.39 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.51 Total: 29.98 kcal Atomic # 6 Polarization: -32.54 SS G_CDS: 3.02 Total: -29.52 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -0.72 Total: -83.06 kcal Atomic # 9 Polarization: -14.62 SS G_CDS: 1.51 Total: -13.11 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.31 kcal Total: -59.74 6.35 -53.39 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260193468.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.383 kcal (2) G-P(sol) polarization free energy of solvation -59.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds