Wall clock time and date at job start Mon Mar 30 2020 02:58:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 F 1.39905 * 109.47157 * 2 1
4 4 F 1.39900 * 109.47010 * 119.99609 * 2 1 3
5 5 C 1.50697 * 109.47466 * 239.99756 * 2 1 3
6 6 C 1.38328 * 119.90992 * 269.72976 * 5 2 1
7 7 C 1.38057 * 120.08588 * 179.72190 * 6 5 2
8 8 C 1.39072 * 119.91152 * 0.57108 * 7 6 5
9 9 N 1.39305 * 120.09318 * 179.68350 * 8 7 6
10 10 C 1.36841 * 119.99404 * 0.02562 * 9 8 7
11 11 H 1.08000 * 120.00627 * 359.97438 * 10 9 8
12 12 C 1.38794 * 120.00019 * 180.02562 * 10 9 8
13 13 N 1.31595 * 119.99846 * 359.97438 * 12 10 9
14 14 Si 1.86797 * 120.00474 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.47051 * 89.99654 * 14 12 10
16 16 H 1.48502 * 109.47364 * 209.99713 * 14 12 10
17 17 H 1.48497 * 109.47225 * 329.99975 * 14 12 10
18 18 C 1.39084 * 119.82234 * 359.69851 * 8 7 6
19 19 C 1.38058 * 119.90843 * 0.02562 * 18 8 7
20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
21 21 H 1.09001 * 109.46832 * 60.00208 * 1 2 3
22 22 H 1.09004 * 109.47261 * 300.00190 * 1 2 3
23 23 H 1.08002 * 119.95850 * 359.97418 * 6 5 2
24 24 H 1.08003 * 120.03907 * 180.24895 * 7 6 5
25 25 H 0.96994 * 119.99727 * 180.02562 * 9 8 7
26 26 H 0.97001 * 120.00603 * 180.02562 * 13 12 10
27 27 H 1.08001 * 120.04879 * 179.97438 * 18 8 7
28 28 H 1.07998 * 119.94972 * 179.97438 * 19 18 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 9 1.9963 1.3190 0.0000
4 9 1.9963 -0.6594 1.1423
5 6 2.0324 -0.7104 -1.2304
6 6 2.2677 -2.0730 -1.1923
7 6 2.7225 -2.7285 -2.3190
8 6 2.9554 -2.0151 -3.4899
9 7 3.4206 -2.6716 -4.6270
10 6 3.6485 -4.0204 -4.5931
11 1 3.4682 -4.5760 -3.6847
12 6 4.1126 -4.6746 -5.7259
13 7 4.3328 -3.9977 -6.8327
14 14 4.4244 -6.5157 -5.6794
15 1 3.1875 -7.2373 -6.0726
16 1 5.5180 -6.8566 -6.6245
17 1 4.8156 -6.9170 -4.3043
18 6 2.7229 -0.6442 -3.5223
19 6 2.2627 0.0029 -2.3930
20 1 -0.3633 -1.0277 0.0005
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3634 0.5139 0.8900
23 1 2.0915 -2.6255 -0.2812
24 1 2.9021 -3.7931 -2.2896
25 1 3.5830 -2.1725 -5.4428
26 1 4.6568 -4.4548 -7.6245
27 1 2.9029 -0.0865 -4.4295
28 1 2.0823 1.0675 -2.4173
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260297464.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:46
Heat of formation + Delta-G solvation = -83.750795 kcal
Electronic energy + Delta-G solvation = -15102.457204 eV
Core-core repulsion = 12174.502586 eV
Total energy + Delta-G solvation = -2927.954618 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-48.47836 -46.50355 -38.47574 -35.34749 -32.47584 -30.97891 -30.02159 -27.77590
-24.96634 -22.70826 -21.86861 -20.15217 -17.88858 -17.18319 -16.74563 -16.22272
-15.84658 -14.75537 -14.23994 -13.74989 -13.49420 -12.98300 -12.92300 -12.89962
-12.49325 -12.38318 -12.36343 -12.23648 -11.78928 -11.49865 -11.28895 -10.76500
-10.45426 -10.36306 -10.12737 -9.86098 -8.85738 -8.10601 -6.88107 -6.70060
-3.87669 2.29357 2.38569 3.08412 3.10285 3.13556 3.95083 4.25903
4.46958 4.81818 4.95128 5.03405 5.14010 5.25413 5.69320 5.74764
5.83961 5.92900 6.05443 6.27939 6.53816 6.74055 6.93499 7.09508
7.27437 7.39068 7.42788 7.60152 7.94832 8.62018 9.19604 9.39058
10.45980
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.055359 B = 0.005906 C = 0.005527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 505.672394 B = 4739.498304 C = 5065.125380
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.182 4.182
2 C 0.350 3.650
3 F -0.209 7.209
4 F -0.209 7.209
5 C -0.296 4.296
6 C -0.028 4.028
7 C -0.225 4.225
8 C 0.216 3.784
9 N -0.549 5.549
10 C -0.304 4.304
11 H 0.105 0.895
12 C 0.021 3.979
13 N -0.888 5.888
14 Si 0.934 3.066
15 H -0.275 1.275
16 H -0.281 1.281
17 H -0.267 1.267
18 C -0.242 4.242
19 C -0.027 4.027
20 H 0.085 0.915
21 H 0.085 0.915
22 H 0.068 0.932
23 H 0.108 0.892
24 H 0.118 0.882
25 H 0.400 0.600
26 H 0.277 0.723
27 H 0.107 0.893
28 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.241 4.072 7.588 10.081
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.239 4.239
2 C 0.314 3.686
3 F -0.191 7.191
4 F -0.190 7.190
5 C -0.301 4.301
6 C -0.048 4.048
7 C -0.249 4.249
8 C 0.092 3.908
9 N -0.149 5.149
10 C -0.434 4.434
11 H 0.122 0.878
12 C -0.183 4.183
13 N -0.524 5.524
14 Si 0.760 3.240
15 H -0.201 1.201
16 H -0.206 1.206
17 H -0.192 1.192
18 C -0.267 4.267
19 C -0.046 4.046
20 H 0.104 0.896
21 H 0.104 0.896
22 H 0.087 0.913
23 H 0.126 0.874
24 H 0.136 0.864
25 H 0.235 0.765
26 H 0.087 0.913
27 H 0.125 0.875
28 H 0.126 0.874
Dipole moment (debyes) X Y Z Total
from point charges -5.027 3.720 7.233 9.562
hybrid contribution 0.393 -0.604 -0.392 0.820
sum -4.635 3.116 6.842 8.832
Atomic orbital electron populations
1.22702 0.92337 1.04937 1.03962 1.19325 0.92484 0.74425 0.82337
1.92942 1.90809 1.38438 1.96861 1.92943 1.90802 1.81273 1.53976
1.19208 1.21088 0.95184 0.94640 1.20318 0.94975 0.92608 0.96896
1.20362 1.12275 0.99667 0.92579 1.17929 0.93856 0.91142 0.87877
1.41142 1.56314 1.07869 1.09541 1.19800 1.41177 0.83244 0.99176
0.87755 1.25356 0.96966 1.01135 0.94797 1.69682 1.43545 1.37241
1.01962 0.85784 0.78320 0.81231 0.78642 1.20092 1.20591 1.19174
1.20173 1.14395 0.93039 0.99065 1.20195 0.95096 0.97785 0.91542
0.89612 0.89647 0.91277 0.87444 0.86373 0.76450 0.91316 0.87457
0.87447
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -2.30 9.37 37.16 0.35 -1.95 15
2 C 0.35 5.72 2.33 -27.89 -0.06 5.66 15
3 F -0.21 -3.56 16.20 2.25 0.04 -3.53 15
4 F -0.21 -3.59 16.19 2.25 0.04 -3.55 15
5 C -0.30 -5.47 5.00 -104.56 -0.52 -5.99 15
6 C -0.03 -0.54 9.39 -39.61 -0.37 -0.91 15
7 C -0.22 -4.77 9.30 -39.34 -0.37 -5.13 15
8 C 0.22 4.81 6.62 -83.84 -0.55 4.26 15
9 N -0.55 -13.29 5.43 -9.60 -0.05 -13.35 15
10 C -0.30 -7.64 9.56 -15.11 -0.14 -7.79 15
11 H 0.10 2.52 5.68 -52.49 -0.30 2.22 15
12 C 0.02 0.53 5.50 -17.45 -0.10 0.44 15
13 N -0.89 -23.20 13.05 55.49 0.72 -22.47 15
14 Si 0.93 19.38 29.55 -169.99 -5.02 14.36 15
15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15
16 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15
17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15
18 C -0.24 -4.89 9.90 -39.33 -0.39 -5.28 15
19 C -0.03 -0.49 9.39 -39.61 -0.37 -0.87 15
20 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15
21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15
22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15
23 H 0.11 1.84 7.59 -52.49 -0.40 1.44 15
24 H 0.12 2.49 5.96 -52.48 -0.31 2.18 15
25 H 0.40 9.79 7.90 -40.82 -0.32 9.47 15
26 H 0.28 6.82 8.31 -40.82 -0.34 6.48 15
27 H 0.11 2.01 8.06 -52.49 -0.42 1.59 15
28 H 0.11 1.77 7.60 -52.49 -0.40 1.37 15
LS Contribution 253.62 15.07 3.82 3.82
Total: -1.00 -26.15 253.62 -5.55 -31.70
By element:
Atomic # 1 Polarization: 13.13 SS G_CDS: -2.56 Total: 10.58 kcal
Atomic # 6 Polarization: -15.03 SS G_CDS: -2.53 Total: -17.56 kcal
Atomic # 7 Polarization: -36.49 SS G_CDS: 0.67 Total: -35.82 kcal
Atomic # 9 Polarization: -7.15 SS G_CDS: 0.07 Total: -7.08 kcal
Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal
Total LS contribution 3.82 Total: 3.82 kcal
Total: -26.15 -5.55 -31.70 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260297464.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -52.053 kcal
(2) G-P(sol) polarization free energy of solvation -26.152 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.204 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.546 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.698 kcal
(6) G-S(sol) free energy of system = (1) + (5) -83.751 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds