Wall clock time and date at job start Mon Mar 30 2020 02:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39905 * 109.47157 * 2 1 4 4 F 1.39900 * 109.47010 * 119.99609 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99756 * 2 1 3 6 6 C 1.38328 * 119.90992 * 269.72976 * 5 2 1 7 7 C 1.38057 * 120.08588 * 179.72190 * 6 5 2 8 8 C 1.39072 * 119.91152 * 0.57108 * 7 6 5 9 9 N 1.39305 * 120.09318 * 179.68350 * 8 7 6 10 10 C 1.36841 * 119.99404 * 0.02562 * 9 8 7 11 11 H 1.08000 * 120.00627 * 359.97438 * 10 9 8 12 12 C 1.38794 * 120.00019 * 180.02562 * 10 9 8 13 13 N 1.31595 * 119.99846 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00474 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47051 * 89.99654 * 14 12 10 16 16 H 1.48502 * 109.47364 * 209.99713 * 14 12 10 17 17 H 1.48497 * 109.47225 * 329.99975 * 14 12 10 18 18 C 1.39084 * 119.82234 * 359.69851 * 8 7 6 19 19 C 1.38058 * 119.90843 * 0.02562 * 18 8 7 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00208 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00190 * 1 2 3 23 23 H 1.08002 * 119.95850 * 359.97418 * 6 5 2 24 24 H 1.08003 * 120.03907 * 180.24895 * 7 6 5 25 25 H 0.96994 * 119.99727 * 180.02562 * 9 8 7 26 26 H 0.97001 * 120.00603 * 180.02562 * 13 12 10 27 27 H 1.08001 * 120.04879 * 179.97438 * 18 8 7 28 28 H 1.07998 * 119.94972 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 1.1423 5 6 2.0324 -0.7104 -1.2304 6 6 2.2677 -2.0730 -1.1923 7 6 2.7225 -2.7285 -2.3190 8 6 2.9554 -2.0151 -3.4899 9 7 3.4206 -2.6716 -4.6270 10 6 3.6485 -4.0204 -4.5931 11 1 3.4682 -4.5760 -3.6847 12 6 4.1126 -4.6746 -5.7259 13 7 4.3328 -3.9977 -6.8327 14 14 4.4244 -6.5157 -5.6794 15 1 3.1875 -7.2373 -6.0726 16 1 5.5180 -6.8566 -6.6245 17 1 4.8156 -6.9170 -4.3043 18 6 2.7229 -0.6442 -3.5223 19 6 2.2627 0.0029 -2.3930 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 2.0915 -2.6255 -0.2812 24 1 2.9021 -3.7931 -2.2896 25 1 3.5830 -2.1725 -5.4428 26 1 4.6568 -4.4548 -7.6245 27 1 2.9029 -0.0865 -4.4295 28 1 2.0823 1.0675 -2.4173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260297464.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:46 Heat of formation + Delta-G solvation = -83.750795 kcal Electronic energy + Delta-G solvation = -15102.457204 eV Core-core repulsion = 12174.502586 eV Total energy + Delta-G solvation = -2927.954618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.47836 -46.50355 -38.47574 -35.34749 -32.47584 -30.97891 -30.02159 -27.77590 -24.96634 -22.70826 -21.86861 -20.15217 -17.88858 -17.18319 -16.74563 -16.22272 -15.84658 -14.75537 -14.23994 -13.74989 -13.49420 -12.98300 -12.92300 -12.89962 -12.49325 -12.38318 -12.36343 -12.23648 -11.78928 -11.49865 -11.28895 -10.76500 -10.45426 -10.36306 -10.12737 -9.86098 -8.85738 -8.10601 -6.88107 -6.70060 -3.87669 2.29357 2.38569 3.08412 3.10285 3.13556 3.95083 4.25903 4.46958 4.81818 4.95128 5.03405 5.14010 5.25413 5.69320 5.74764 5.83961 5.92900 6.05443 6.27939 6.53816 6.74055 6.93499 7.09508 7.27437 7.39068 7.42788 7.60152 7.94832 8.62018 9.19604 9.39058 10.45980 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.055359 B = 0.005906 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.672394 B = 4739.498304 C = 5065.125380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.350 3.650 3 F -0.209 7.209 4 F -0.209 7.209 5 C -0.296 4.296 6 C -0.028 4.028 7 C -0.225 4.225 8 C 0.216 3.784 9 N -0.549 5.549 10 C -0.304 4.304 11 H 0.105 0.895 12 C 0.021 3.979 13 N -0.888 5.888 14 Si 0.934 3.066 15 H -0.275 1.275 16 H -0.281 1.281 17 H -0.267 1.267 18 C -0.242 4.242 19 C -0.027 4.027 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.068 0.932 23 H 0.108 0.892 24 H 0.118 0.882 25 H 0.400 0.600 26 H 0.277 0.723 27 H 0.107 0.893 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 4.072 7.588 10.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.314 3.686 3 F -0.191 7.191 4 F -0.190 7.190 5 C -0.301 4.301 6 C -0.048 4.048 7 C -0.249 4.249 8 C 0.092 3.908 9 N -0.149 5.149 10 C -0.434 4.434 11 H 0.122 0.878 12 C -0.183 4.183 13 N -0.524 5.524 14 Si 0.760 3.240 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.192 1.192 18 C -0.267 4.267 19 C -0.046 4.046 20 H 0.104 0.896 21 H 0.104 0.896 22 H 0.087 0.913 23 H 0.126 0.874 24 H 0.136 0.864 25 H 0.235 0.765 26 H 0.087 0.913 27 H 0.125 0.875 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.027 3.720 7.233 9.562 hybrid contribution 0.393 -0.604 -0.392 0.820 sum -4.635 3.116 6.842 8.832 Atomic orbital electron populations 1.22702 0.92337 1.04937 1.03962 1.19325 0.92484 0.74425 0.82337 1.92942 1.90809 1.38438 1.96861 1.92943 1.90802 1.81273 1.53976 1.19208 1.21088 0.95184 0.94640 1.20318 0.94975 0.92608 0.96896 1.20362 1.12275 0.99667 0.92579 1.17929 0.93856 0.91142 0.87877 1.41142 1.56314 1.07869 1.09541 1.19800 1.41177 0.83244 0.99176 0.87755 1.25356 0.96966 1.01135 0.94797 1.69682 1.43545 1.37241 1.01962 0.85784 0.78320 0.81231 0.78642 1.20092 1.20591 1.19174 1.20173 1.14395 0.93039 0.99065 1.20195 0.95096 0.97785 0.91542 0.89612 0.89647 0.91277 0.87444 0.86373 0.76450 0.91316 0.87457 0.87447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.30 9.37 37.16 0.35 -1.95 15 2 C 0.35 5.72 2.33 -27.89 -0.06 5.66 15 3 F -0.21 -3.56 16.20 2.25 0.04 -3.53 15 4 F -0.21 -3.59 16.19 2.25 0.04 -3.55 15 5 C -0.30 -5.47 5.00 -104.56 -0.52 -5.99 15 6 C -0.03 -0.54 9.39 -39.61 -0.37 -0.91 15 7 C -0.22 -4.77 9.30 -39.34 -0.37 -5.13 15 8 C 0.22 4.81 6.62 -83.84 -0.55 4.26 15 9 N -0.55 -13.29 5.43 -9.60 -0.05 -13.35 15 10 C -0.30 -7.64 9.56 -15.11 -0.14 -7.79 15 11 H 0.10 2.52 5.68 -52.49 -0.30 2.22 15 12 C 0.02 0.53 5.50 -17.45 -0.10 0.44 15 13 N -0.89 -23.20 13.05 55.49 0.72 -22.47 15 14 Si 0.93 19.38 29.55 -169.99 -5.02 14.36 15 15 H -0.28 -5.66 7.11 56.52 0.40 -5.26 15 16 H -0.28 -5.81 7.11 56.52 0.40 -5.41 15 17 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 18 C -0.24 -4.89 9.90 -39.33 -0.39 -5.28 15 19 C -0.03 -0.49 9.39 -39.61 -0.37 -0.87 15 20 H 0.08 1.03 8.14 -51.93 -0.42 0.60 15 21 H 0.08 1.01 8.14 -51.93 -0.42 0.59 15 22 H 0.07 0.75 8.14 -51.93 -0.42 0.33 15 23 H 0.11 1.84 7.59 -52.49 -0.40 1.44 15 24 H 0.12 2.49 5.96 -52.48 -0.31 2.18 15 25 H 0.40 9.79 7.90 -40.82 -0.32 9.47 15 26 H 0.28 6.82 8.31 -40.82 -0.34 6.48 15 27 H 0.11 2.01 8.06 -52.49 -0.42 1.59 15 28 H 0.11 1.77 7.60 -52.49 -0.40 1.37 15 LS Contribution 253.62 15.07 3.82 3.82 Total: -1.00 -26.15 253.62 -5.55 -31.70 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -2.56 Total: 10.58 kcal Atomic # 6 Polarization: -15.03 SS G_CDS: -2.53 Total: -17.56 kcal Atomic # 7 Polarization: -36.49 SS G_CDS: 0.67 Total: -35.82 kcal Atomic # 9 Polarization: -7.15 SS G_CDS: 0.07 Total: -7.08 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -26.15 -5.55 -31.70 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260297464.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.053 kcal (2) G-P(sol) polarization free energy of solvation -26.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds