Wall clock time and date at job start Mon Mar 30 2020 02:58:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 F 1.39905 * 109.47157 * 2 1
4 4 F 1.39900 * 109.47010 * 119.99609 * 2 1 3
5 5 C 1.50697 * 109.47466 * 239.99756 * 2 1 3
6 6 C 1.38328 * 119.90992 * 269.72976 * 5 2 1
7 7 C 1.38057 * 120.08588 * 179.72190 * 6 5 2
8 8 C 1.39072 * 119.91152 * 0.57108 * 7 6 5
9 9 N 1.39305 * 120.09318 * 179.68350 * 8 7 6
10 10 C 1.36841 * 119.99404 * 0.02562 * 9 8 7
11 11 H 1.08000 * 120.00627 * 359.97438 * 10 9 8
12 12 C 1.38794 * 120.00019 * 180.02562 * 10 9 8
13 13 N 1.31595 * 119.99846 * 359.97438 * 12 10 9
14 14 Si 1.86797 * 120.00474 * 179.97438 * 12 10 9
15 15 H 1.48501 * 109.47051 * 89.99654 * 14 12 10
16 16 H 1.48502 * 109.47364 * 209.99713 * 14 12 10
17 17 H 1.48497 * 109.47225 * 329.99975 * 14 12 10
18 18 C 1.39084 * 119.82234 * 359.69851 * 8 7 6
19 19 C 1.38058 * 119.90843 * 0.02562 * 18 8 7
20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
21 21 H 1.09001 * 109.46832 * 60.00208 * 1 2 3
22 22 H 1.09004 * 109.47261 * 300.00190 * 1 2 3
23 23 H 1.08002 * 119.95850 * 359.97418 * 6 5 2
24 24 H 1.08003 * 120.03907 * 180.24895 * 7 6 5
25 25 H 0.96994 * 119.99727 * 180.02562 * 9 8 7
26 26 H 0.97001 * 120.00603 * 180.02562 * 13 12 10
27 27 H 1.08001 * 120.04879 * 179.97438 * 18 8 7
28 28 H 1.07998 * 119.94972 * 179.97438 * 19 18 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 9 1.9963 1.3190 0.0000
4 9 1.9963 -0.6594 1.1423
5 6 2.0324 -0.7104 -1.2304
6 6 2.2677 -2.0730 -1.1923
7 6 2.7225 -2.7285 -2.3190
8 6 2.9554 -2.0151 -3.4899
9 7 3.4206 -2.6716 -4.6270
10 6 3.6485 -4.0204 -4.5931
11 1 3.4682 -4.5760 -3.6847
12 6 4.1126 -4.6746 -5.7259
13 7 4.3328 -3.9977 -6.8327
14 14 4.4244 -6.5157 -5.6794
15 1 3.1875 -7.2373 -6.0726
16 1 5.5180 -6.8566 -6.6245
17 1 4.8156 -6.9170 -4.3043
18 6 2.7229 -0.6442 -3.5223
19 6 2.2627 0.0029 -2.3930
20 1 -0.3633 -1.0277 0.0005
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3634 0.5139 0.8900
23 1 2.0915 -2.6255 -0.2812
24 1 2.9021 -3.7931 -2.2896
25 1 3.5830 -2.1725 -5.4428
26 1 4.6568 -4.4548 -7.6245
27 1 2.9029 -0.0865 -4.4295
28 1 2.0823 1.0675 -2.4173
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260297464.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:58:46
Heat of formation + Delta-G solvation = -97.184821 kcal
Electronic energy + Delta-G solvation = -15103.039747 eV
Core-core repulsion = 12174.502586 eV
Total energy + Delta-G solvation = -2928.537161 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-49.81232 -47.84264 -40.12791 -37.02998 -34.13944 -32.38887 -31.63205 -29.28903
-26.70093 -24.14402 -23.48446 -21.67965 -19.63914 -18.71148 -18.12965 -17.80390
-17.10111 -16.51302 -15.89118 -15.33362 -14.89540 -14.50614 -14.36414 -14.32124
-14.04658 -13.89087 -13.78884 -13.29354 -13.27875 -12.95328 -12.84803 -12.48621
-12.09944 -11.99112 -11.60377 -11.47773 -10.62716 -9.70370 -8.60730 -8.51526
-5.76763 0.69367 0.75821 1.41498 1.46559 1.53521 2.25793 2.79679
3.00892 3.30165 3.35449 3.52126 3.70749 3.98283 4.22327 4.28610
4.67430 4.72624 4.75460 4.97828 5.08367 5.10801 5.26531 5.35060
5.59487 5.73143 5.80974 5.87847 6.30182 6.78468 7.44286 7.57914
8.66502
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.055359 B = 0.005906 C = 0.005527
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 505.672394 B = 4739.498304 C = 5065.125380
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C 0.345 3.655
3 F -0.212 7.212
4 F -0.213 7.213
5 C -0.283 4.283
6 C -0.028 4.028
7 C -0.239 4.239
8 C 0.202 3.798
9 N -0.578 5.578
10 C -0.321 4.321
11 H 0.106 0.894
12 C -0.029 4.029
13 N -0.929 5.929
14 Si 0.998 3.002
15 H -0.272 1.272
16 H -0.281 1.281
17 H -0.261 1.261
18 C -0.246 4.246
19 C -0.027 4.027
20 H 0.093 0.907
21 H 0.095 0.905
22 H 0.091 0.909
23 H 0.130 0.870
24 H 0.113 0.887
25 H 0.393 0.607
26 H 0.276 0.724
27 H 0.118 0.882
28 H 0.135 0.865
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.343 4.708 9.474 12.335
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.234 4.234
2 C 0.309 3.691
3 F -0.193 7.193
4 F -0.194 7.194
5 C -0.287 4.287
6 C -0.047 4.047
7 C -0.263 4.263
8 C 0.082 3.918
9 N -0.181 5.181
10 C -0.451 4.451
11 H 0.123 0.877
12 C -0.228 4.228
13 N -0.568 5.568
14 Si 0.821 3.179
15 H -0.197 1.197
16 H -0.206 1.206
17 H -0.185 1.185
18 C -0.270 4.270
19 C -0.046 4.046
20 H 0.112 0.888
21 H 0.114 0.886
22 H 0.110 0.890
23 H 0.148 0.852
24 H 0.131 0.869
25 H 0.227 0.773
26 H 0.085 0.915
27 H 0.136 0.864
28 H 0.152 0.848
Dipole moment (debyes) X Y Z Total
from point charges -6.157 4.384 9.188 11.897
hybrid contribution 0.633 -0.557 -0.711 1.103
sum -5.525 3.827 8.476 10.818
Atomic orbital electron populations
1.22708 0.88941 1.06090 1.05709 1.19571 0.94636 0.73861 0.80983
1.92944 1.91098 1.38483 1.96793 1.92943 1.91106 1.81370 1.54001
1.19656 1.18305 0.95125 0.95662 1.20566 0.94021 0.93175 0.96968
1.20511 1.12964 0.99771 0.93098 1.18355 0.93414 0.92176 0.87831
1.41088 1.59443 1.07676 1.09882 1.20037 1.41558 0.84014 0.99442
0.87652 1.26177 0.97088 1.05085 0.94406 1.69785 1.45814 1.38637
1.02557 0.84826 0.78024 0.76351 0.78674 1.19723 1.20643 1.18458
1.20437 1.13914 0.92397 1.00264 1.20520 0.94003 0.99173 0.90887
0.88794 0.88617 0.88986 0.85213 0.86889 0.77332 0.91524 0.86419
0.84757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.18 -3.72 9.37 71.98 0.67 -3.05 15
2 C 0.35 10.00 2.33 29.85 0.07 10.06 15
3 F -0.21 -6.44 16.20 44.97 0.73 -5.71 15
4 F -0.21 -6.58 16.19 44.97 0.73 -5.85 15
5 C -0.28 -9.58 5.00 -19.82 -0.10 -9.68 15
6 C -0.03 -1.01 9.39 22.25 0.21 -0.80 15
7 C -0.24 -10.01 9.30 22.43 0.21 -9.80 15
8 C 0.20 9.01 6.62 38.36 0.25 9.26 15
9 N -0.58 -28.81 5.43 -184.29 -1.00 -29.81 15
10 C -0.32 -16.57 9.56 84.04 0.80 -15.77 15
11 H 0.11 5.21 5.68 -2.91 -0.02 5.20 15
12 C -0.03 -1.46 5.50 84.86 0.47 -1.00 15
13 N -0.93 -50.25 13.05 21.65 0.28 -49.97 15
14 Si 1.00 40.46 29.55 68.60 2.03 42.49 15
15 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15
16 H -0.28 -11.27 7.11 99.48 0.71 -10.56 15
17 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15
18 C -0.25 -9.64 9.90 22.43 0.22 -9.42 15
19 C -0.03 -0.92 9.39 22.25 0.21 -0.71 15
20 H 0.09 1.85 8.14 -2.39 -0.02 1.83 15
21 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15
22 H 0.09 1.57 8.14 -2.38 -0.02 1.55 15
23 H 0.13 4.07 7.59 -2.91 -0.02 4.05 15
24 H 0.11 4.79 5.96 -2.91 -0.02 4.77 15
25 H 0.39 20.06 7.90 -92.71 -0.73 19.33 15
26 H 0.28 14.07 8.31 -92.71 -0.77 13.30 15
27 H 0.12 4.32 8.06 -2.91 -0.02 4.29 15
28 H 0.13 3.93 7.60 -2.91 -0.02 3.91 15
Total: -1.00 -55.90 253.62 6.24 -49.66
By element:
Atomic # 1 Polarization: 29.63 SS G_CDS: 0.46 Total: 30.08 kcal
Atomic # 6 Polarization: -33.91 SS G_CDS: 3.02 Total: -30.89 kcal
Atomic # 7 Polarization: -79.06 SS G_CDS: -0.72 Total: -79.78 kcal
Atomic # 9 Polarization: -13.02 SS G_CDS: 1.46 Total: -11.57 kcal
Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal
Total: -55.90 6.24 -49.66 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260297464.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -47.522 kcal
(2) G-P(sol) polarization free energy of solvation -55.903 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.425 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.663 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.185 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds