Wall clock time and date at job start Mon Mar 30 2020 02:58:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 F 1.39905 * 109.47157 * 2 1 4 4 F 1.39900 * 109.47010 * 119.99609 * 2 1 3 5 5 C 1.50697 * 109.47466 * 239.99756 * 2 1 3 6 6 C 1.38328 * 119.90992 * 269.72976 * 5 2 1 7 7 C 1.38057 * 120.08588 * 179.72190 * 6 5 2 8 8 C 1.39072 * 119.91152 * 0.57108 * 7 6 5 9 9 N 1.39305 * 120.09318 * 179.68350 * 8 7 6 10 10 C 1.36841 * 119.99404 * 0.02562 * 9 8 7 11 11 H 1.08000 * 120.00627 * 359.97438 * 10 9 8 12 12 C 1.38794 * 120.00019 * 180.02562 * 10 9 8 13 13 N 1.31595 * 119.99846 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00474 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47051 * 89.99654 * 14 12 10 16 16 H 1.48502 * 109.47364 * 209.99713 * 14 12 10 17 17 H 1.48497 * 109.47225 * 329.99975 * 14 12 10 18 18 C 1.39084 * 119.82234 * 359.69851 * 8 7 6 19 19 C 1.38058 * 119.90843 * 0.02562 * 18 8 7 20 20 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46832 * 60.00208 * 1 2 3 22 22 H 1.09004 * 109.47261 * 300.00190 * 1 2 3 23 23 H 1.08002 * 119.95850 * 359.97418 * 6 5 2 24 24 H 1.08003 * 120.03907 * 180.24895 * 7 6 5 25 25 H 0.96994 * 119.99727 * 180.02562 * 9 8 7 26 26 H 0.97001 * 120.00603 * 180.02562 * 13 12 10 27 27 H 1.08001 * 120.04879 * 179.97438 * 18 8 7 28 28 H 1.07998 * 119.94972 * 179.97438 * 19 18 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 9 1.9963 1.3190 0.0000 4 9 1.9963 -0.6594 1.1423 5 6 2.0324 -0.7104 -1.2304 6 6 2.2677 -2.0730 -1.1923 7 6 2.7225 -2.7285 -2.3190 8 6 2.9554 -2.0151 -3.4899 9 7 3.4206 -2.6716 -4.6270 10 6 3.6485 -4.0204 -4.5931 11 1 3.4682 -4.5760 -3.6847 12 6 4.1126 -4.6746 -5.7259 13 7 4.3328 -3.9977 -6.8327 14 14 4.4244 -6.5157 -5.6794 15 1 3.1875 -7.2373 -6.0726 16 1 5.5180 -6.8566 -6.6245 17 1 4.8156 -6.9170 -4.3043 18 6 2.7229 -0.6442 -3.5223 19 6 2.2627 0.0029 -2.3930 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 0.5139 0.8900 23 1 2.0915 -2.6255 -0.2812 24 1 2.9021 -3.7931 -2.2896 25 1 3.5830 -2.1725 -5.4428 26 1 4.6568 -4.4548 -7.6245 27 1 2.9029 -0.0865 -4.4295 28 1 2.0823 1.0675 -2.4173 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260297464.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:46 Heat of formation + Delta-G solvation = -97.184821 kcal Electronic energy + Delta-G solvation = -15103.039747 eV Core-core repulsion = 12174.502586 eV Total energy + Delta-G solvation = -2928.537161 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.81232 -47.84264 -40.12791 -37.02998 -34.13944 -32.38887 -31.63205 -29.28903 -26.70093 -24.14402 -23.48446 -21.67965 -19.63914 -18.71148 -18.12965 -17.80390 -17.10111 -16.51302 -15.89118 -15.33362 -14.89540 -14.50614 -14.36414 -14.32124 -14.04658 -13.89087 -13.78884 -13.29354 -13.27875 -12.95328 -12.84803 -12.48621 -12.09944 -11.99112 -11.60377 -11.47773 -10.62716 -9.70370 -8.60730 -8.51526 -5.76763 0.69367 0.75821 1.41498 1.46559 1.53521 2.25793 2.79679 3.00892 3.30165 3.35449 3.52126 3.70749 3.98283 4.22327 4.28610 4.67430 4.72624 4.75460 4.97828 5.08367 5.10801 5.26531 5.35060 5.59487 5.73143 5.80974 5.87847 6.30182 6.78468 7.44286 7.57914 8.66502 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.055359 B = 0.005906 C = 0.005527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.672394 B = 4739.498304 C = 5065.125380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.345 3.655 3 F -0.212 7.212 4 F -0.213 7.213 5 C -0.283 4.283 6 C -0.028 4.028 7 C -0.239 4.239 8 C 0.202 3.798 9 N -0.578 5.578 10 C -0.321 4.321 11 H 0.106 0.894 12 C -0.029 4.029 13 N -0.929 5.929 14 Si 0.998 3.002 15 H -0.272 1.272 16 H -0.281 1.281 17 H -0.261 1.261 18 C -0.246 4.246 19 C -0.027 4.027 20 H 0.093 0.907 21 H 0.095 0.905 22 H 0.091 0.909 23 H 0.130 0.870 24 H 0.113 0.887 25 H 0.393 0.607 26 H 0.276 0.724 27 H 0.118 0.882 28 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.343 4.708 9.474 12.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.309 3.691 3 F -0.193 7.193 4 F -0.194 7.194 5 C -0.287 4.287 6 C -0.047 4.047 7 C -0.263 4.263 8 C 0.082 3.918 9 N -0.181 5.181 10 C -0.451 4.451 11 H 0.123 0.877 12 C -0.228 4.228 13 N -0.568 5.568 14 Si 0.821 3.179 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.185 1.185 18 C -0.270 4.270 19 C -0.046 4.046 20 H 0.112 0.888 21 H 0.114 0.886 22 H 0.110 0.890 23 H 0.148 0.852 24 H 0.131 0.869 25 H 0.227 0.773 26 H 0.085 0.915 27 H 0.136 0.864 28 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -6.157 4.384 9.188 11.897 hybrid contribution 0.633 -0.557 -0.711 1.103 sum -5.525 3.827 8.476 10.818 Atomic orbital electron populations 1.22708 0.88941 1.06090 1.05709 1.19571 0.94636 0.73861 0.80983 1.92944 1.91098 1.38483 1.96793 1.92943 1.91106 1.81370 1.54001 1.19656 1.18305 0.95125 0.95662 1.20566 0.94021 0.93175 0.96968 1.20511 1.12964 0.99771 0.93098 1.18355 0.93414 0.92176 0.87831 1.41088 1.59443 1.07676 1.09882 1.20037 1.41558 0.84014 0.99442 0.87652 1.26177 0.97088 1.05085 0.94406 1.69785 1.45814 1.38637 1.02557 0.84826 0.78024 0.76351 0.78674 1.19723 1.20643 1.18458 1.20437 1.13914 0.92397 1.00264 1.20520 0.94003 0.99173 0.90887 0.88794 0.88617 0.88986 0.85213 0.86889 0.77332 0.91524 0.86419 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.72 9.37 71.98 0.67 -3.05 15 2 C 0.35 10.00 2.33 29.85 0.07 10.06 15 3 F -0.21 -6.44 16.20 44.97 0.73 -5.71 15 4 F -0.21 -6.58 16.19 44.97 0.73 -5.85 15 5 C -0.28 -9.58 5.00 -19.82 -0.10 -9.68 15 6 C -0.03 -1.01 9.39 22.25 0.21 -0.80 15 7 C -0.24 -10.01 9.30 22.43 0.21 -9.80 15 8 C 0.20 9.01 6.62 38.36 0.25 9.26 15 9 N -0.58 -28.81 5.43 -184.29 -1.00 -29.81 15 10 C -0.32 -16.57 9.56 84.04 0.80 -15.77 15 11 H 0.11 5.21 5.68 -2.91 -0.02 5.20 15 12 C -0.03 -1.46 5.50 84.86 0.47 -1.00 15 13 N -0.93 -50.25 13.05 21.65 0.28 -49.97 15 14 Si 1.00 40.46 29.55 68.60 2.03 42.49 15 15 H -0.27 -10.73 7.11 99.48 0.71 -10.02 15 16 H -0.28 -11.27 7.11 99.48 0.71 -10.56 15 17 H -0.26 -10.10 7.11 99.48 0.71 -9.39 15 18 C -0.25 -9.64 9.90 22.43 0.22 -9.42 15 19 C -0.03 -0.92 9.39 22.25 0.21 -0.71 15 20 H 0.09 1.85 8.14 -2.39 -0.02 1.83 15 21 H 0.09 1.84 8.14 -2.39 -0.02 1.82 15 22 H 0.09 1.57 8.14 -2.38 -0.02 1.55 15 23 H 0.13 4.07 7.59 -2.91 -0.02 4.05 15 24 H 0.11 4.79 5.96 -2.91 -0.02 4.77 15 25 H 0.39 20.06 7.90 -92.71 -0.73 19.33 15 26 H 0.28 14.07 8.31 -92.71 -0.77 13.30 15 27 H 0.12 4.32 8.06 -2.91 -0.02 4.29 15 28 H 0.13 3.93 7.60 -2.91 -0.02 3.91 15 Total: -1.00 -55.90 253.62 6.24 -49.66 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: 0.46 Total: 30.08 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 3.02 Total: -30.89 kcal Atomic # 7 Polarization: -79.06 SS G_CDS: -0.72 Total: -79.78 kcal Atomic # 9 Polarization: -13.02 SS G_CDS: 1.46 Total: -11.57 kcal Atomic # 14 Polarization: 40.46 SS G_CDS: 2.03 Total: 42.49 kcal Total: -55.90 6.24 -49.66 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260297464.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.522 kcal (2) G-P(sol) polarization free energy of solvation -55.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds