Wall clock time and date at job start Mon Mar 30 2020 03:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.46931 * 2 1 4 4 C 1.50698 * 109.47367 * 239.99670 * 2 1 3 5 5 H 1.07998 * 120.00189 * 240.00759 * 4 2 1 6 6 C 1.37876 * 120.00046 * 59.99725 * 4 2 1 7 7 N 1.31523 * 119.99715 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00103 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46951 * 90.00562 * 8 6 4 10 10 H 1.48503 * 109.47102 * 209.99916 * 8 6 4 11 11 H 1.48500 * 109.47333 * 330.00482 * 8 6 4 12 12 C 1.50704 * 109.46859 * 119.99850 * 2 1 3 13 13 C 1.38675 * 120.41697 * 239.99803 * 12 2 1 14 14 C 1.38628 * 118.42013 * 180.02562 * 13 12 2 15 15 C 1.38220 * 119.16327 * 0.02562 * 14 13 12 16 16 C 1.50702 * 119.61973 * 179.97438 * 15 14 13 17 17 F 1.39899 * 109.46935 * 299.99841 * 16 15 14 18 18 F 1.39897 * 109.47138 * 59.99930 * 16 15 14 19 19 N 1.31857 * 120.76192 * 359.97200 * 15 14 13 20 20 C 1.31883 * 121.72598 * 0.02562 * 19 15 14 21 21 H 1.08998 * 109.47351 * 300.00331 * 1 2 3 22 22 H 1.08995 * 109.47456 * 60.00088 * 1 2 3 23 23 H 1.09002 * 109.47224 * 180.02562 * 1 2 3 24 24 H 0.96998 * 119.99721 * 179.97438 * 7 6 4 25 25 H 1.07998 * 120.78542 * 359.75048 * 13 12 2 26 26 H 1.07996 * 120.41751 * 179.97438 * 14 13 12 27 27 H 1.09002 * 109.47204 * 180.02562 * 16 15 14 28 28 H 1.08007 * 119.61726 * 179.97438 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1206 -4.0078 9 1 1.3427 -2.1619 -4.4117 10 1 2.4866 -0.1416 -5.1122 11 1 3.6293 -1.7586 -3.7120 12 6 2.0323 -0.7104 1.2305 13 6 2.8300 -0.0448 2.1490 14 6 3.2695 -0.7383 3.2660 15 6 2.9009 -2.0609 3.4258 16 6 3.3733 -2.8247 4.6360 17 9 4.7719 -2.8542 4.6521 18 9 2.9067 -2.1963 5.7955 19 7 2.1408 -2.6619 2.5317 20 6 1.7045 -2.0334 1.4574 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 0.7095 1.1616 -3.4844 25 1 3.1061 0.9879 1.9954 26 1 3.8926 -0.2516 4.0017 27 1 2.9892 -3.8440 4.5950 28 1 1.0839 -2.5590 0.7467 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260389398.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:05 Heat of formation + Delta-G solvation = -95.937482 kcal Electronic energy + Delta-G solvation = -15139.362131 eV Core-core repulsion = 12210.879058 eV Total energy + Delta-G solvation = -2928.483073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -50.03482 -48.02508 -41.24775 -36.77231 -33.98577 -33.11852 -31.17285 -27.37899 -27.11832 -24.90141 -23.66190 -21.74435 -18.82705 -18.68392 -18.27903 -18.14026 -17.14406 -16.72158 -15.68337 -15.57521 -15.15004 -14.78532 -14.45532 -14.41178 -14.39335 -14.03932 -13.60401 -13.30373 -12.89672 -12.80973 -12.41174 -12.23731 -12.11904 -11.63300 -11.18849 -10.72159 -10.61790 -10.38376 -9.86409 -8.13309 -6.27498 0.01015 0.26706 1.42225 1.44686 1.53358 2.39779 2.41550 2.70492 3.15841 3.17490 3.51210 3.87004 4.04510 4.06003 4.15663 4.19602 4.49373 4.64284 4.90519 4.95904 5.13514 5.16527 5.33170 5.55790 5.68371 5.85293 6.01623 6.26955 6.78703 6.82353 7.41355 8.91240 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.046593 B = 0.006392 C = 0.006041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 600.807712 B = 4379.082976 C = 4633.604402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.074 3.926 3 H 0.017 0.983 4 C -0.526 4.526 5 H 0.052 0.948 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.273 1.273 12 C -0.078 4.078 13 C -0.094 4.094 14 C -0.130 4.130 15 C 0.006 3.994 16 C 0.336 3.664 17 F -0.201 7.201 18 F -0.199 7.199 19 N -0.469 5.469 20 C 0.095 3.905 21 H 0.026 0.974 22 H 0.064 0.936 23 H 0.036 0.964 24 H 0.263 0.737 25 H 0.149 0.851 26 H 0.158 0.842 27 H 0.154 0.846 28 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 -4.496 11.011 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.055 3.945 3 H 0.035 0.965 4 C -0.564 4.564 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.209 1.209 11 H -0.197 1.197 12 C -0.080 4.080 13 C -0.119 4.119 14 C -0.150 4.150 15 C -0.133 4.133 16 C 0.281 3.719 17 F -0.182 7.182 18 F -0.181 7.181 19 N -0.178 5.178 20 C -0.063 4.063 21 H 0.045 0.955 22 H 0.083 0.917 23 H 0.055 0.945 24 H 0.073 0.927 25 H 0.167 0.833 26 H 0.176 0.824 27 H 0.171 0.829 28 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.898 -5.247 11.052 12.573 hybrid contribution 0.468 0.838 -1.197 1.534 sum 3.366 -4.409 9.856 11.309 Atomic orbital electron populations 1.21662 0.96743 0.99720 1.00135 1.17760 0.93542 0.94438 0.88737 0.96460 1.21302 1.31614 1.12542 0.90921 0.93005 1.25629 0.95076 0.95555 1.01591 1.69988 1.37194 1.23721 1.24227 0.85638 0.78829 0.78428 0.79276 1.19938 1.20938 1.19737 1.21613 0.94405 0.95658 0.96319 1.21805 0.95841 1.01372 0.92930 1.22039 0.99739 0.94551 0.98632 1.21716 1.00246 0.93702 0.97587 1.20113 0.74985 0.98135 0.78620 1.92997 1.31090 1.97566 1.96559 1.92996 1.88343 1.85542 1.51188 1.67200 1.09370 1.38817 1.02418 1.22583 0.98059 0.92115 0.93496 0.95466 0.91744 0.94506 0.92738 0.83315 0.82434 0.82885 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.79 71.98 0.63 -5.03 15 2 C 0.07 3.50 2.49 -12.29 -0.03 3.47 15 3 H 0.02 0.88 7.93 -2.39 -0.02 0.86 15 4 C -0.53 -27.24 8.25 25.60 0.21 -27.03 15 5 H 0.05 2.69 7.61 -2.91 -0.02 2.67 15 6 C 0.02 1.10 5.30 84.65 0.45 1.55 15 7 N -0.91 -49.88 11.32 21.45 0.24 -49.63 15 8 Si 0.95 41.89 29.54 68.60 2.03 43.92 15 9 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 10 H -0.28 -12.32 7.11 99.48 0.71 -11.61 15 11 H -0.27 -11.84 7.11 99.48 0.71 -11.14 15 12 C -0.08 -3.15 4.74 -19.77 -0.09 -3.24 15 13 C -0.09 -3.24 9.81 22.47 0.22 -3.02 15 14 C -0.13 -3.95 9.63 22.36 0.22 -3.73 15 15 C 0.01 0.19 6.28 42.55 0.27 0.45 15 16 C 0.34 8.23 5.54 71.24 0.39 8.63 15 17 F -0.20 -5.18 17.25 44.97 0.78 -4.41 15 18 F -0.20 -5.01 17.25 44.97 0.78 -4.24 15 19 N -0.47 -16.46 10.25 -183.89 -1.89 -18.34 15 20 C 0.09 3.65 9.90 84.67 0.84 4.48 15 21 H 0.03 1.09 8.14 -2.39 -0.02 1.07 15 22 H 0.06 3.25 6.07 -2.39 -0.01 3.24 15 23 H 0.04 1.57 7.42 -2.39 -0.02 1.56 15 24 H 0.26 13.74 8.31 -92.71 -0.77 12.97 15 25 H 0.15 4.61 8.00 -2.91 -0.02 4.59 15 26 H 0.16 3.84 8.06 -2.91 -0.02 3.81 15 27 H 0.15 2.96 8.11 -2.39 -0.02 2.94 15 28 H 0.16 6.11 7.59 -2.91 -0.02 6.08 15 Total: -1.00 -56.37 254.90 6.21 -50.16 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: 1.17 Total: 6.00 kcal Atomic # 6 Polarization: -26.56 SS G_CDS: 3.10 Total: -23.46 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -1.64 Total: -67.98 kcal Atomic # 9 Polarization: -10.20 SS G_CDS: 1.55 Total: -8.64 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -56.37 6.21 -50.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260389398.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.775 kcal (2) G-P(sol) polarization free energy of solvation -56.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds