Wall clock time and date at job start Mon Mar 30 2020 03:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47248 * 2 1 4 4 C 1.50696 * 109.47197 * 119.99714 * 2 1 3 5 5 H 1.08003 * 120.00278 * 119.99658 * 4 2 1 6 6 C 1.37881 * 119.99997 * 300.00294 * 4 2 1 7 7 N 1.31513 * 120.00015 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00106 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47432 * 89.99620 * 8 6 4 10 10 H 1.48503 * 109.47051 * 210.00004 * 8 6 4 11 11 H 1.48507 * 109.46707 * 329.99621 * 8 6 4 12 12 C 1.50703 * 109.47106 * 239.99649 * 2 1 3 13 13 C 1.38668 * 120.78954 * 299.99720 * 12 2 1 14 14 C 1.38182 * 119.15929 * 180.02562 * 13 12 2 15 15 N 1.31878 * 120.77021 * 359.97438 * 14 13 12 16 16 C 1.31854 * 121.72440 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.61803 * 179.72121 * 16 15 14 18 18 F 1.39901 * 109.47025 * 120.00721 * 17 16 15 19 19 F 1.39907 * 109.46855 * 239.99978 * 17 16 15 20 20 C 1.38230 * 120.76583 * 0.02562 * 16 15 14 21 21 H 1.08995 * 109.46844 * 300.00247 * 1 2 3 22 22 H 1.08998 * 109.47026 * 60.00202 * 1 2 3 23 23 H 1.08997 * 109.46795 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00031 * 180.02562 * 7 6 4 25 25 H 1.08001 * 120.42212 * 0.02562 * 13 12 2 26 26 H 1.08001 * 119.61508 * 180.02562 * 14 13 12 27 27 H 1.08991 * 109.47070 * 0.02562 * 17 16 15 28 28 H 1.07992 * 120.42429 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1193 4.0081 9 1 3.6304 -0.5438 4.4119 10 1 1.3444 -0.9488 5.1124 11 1 2.4880 -2.5652 3.7123 12 6 2.0324 -0.7105 -1.2304 13 6 1.7075 -2.0378 -1.4660 14 6 2.1868 -2.6564 -2.6049 15 7 2.9439 -1.9993 -3.4618 16 6 3.2727 -0.7369 -3.2702 17 6 4.1458 -0.0336 -4.2773 18 9 3.4583 1.0651 -4.8039 19 9 5.3178 0.4058 -3.6522 20 6 2.8311 -0.0528 -2.1531 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7094 1.1619 3.4843 25 1 1.0876 -2.5813 -0.7683 26 1 1.9380 -3.6899 -2.7958 27 1 4.3995 -0.7230 -5.0824 28 1 3.1042 0.9809 -2.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260459495.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:14 Heat of formation + Delta-G solvation = -81.645059 kcal Electronic energy + Delta-G solvation = -15260.616624 eV Core-core repulsion = 12332.753318 eV Total energy + Delta-G solvation = -2927.863307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.85338 -46.84757 -39.79469 -35.12946 -32.19363 -31.60142 -29.21819 -26.46106 -25.28746 -23.17126 -22.44238 -19.93391 -17.39559 -17.09926 -16.98018 -16.33893 -15.63750 -15.11328 -14.72699 -14.21371 -13.87331 -13.37281 -13.22803 -12.85156 -12.76318 -12.47337 -11.68978 -11.65394 -11.09491 -11.02589 -10.97096 -10.54898 -10.24533 -10.03972 -9.36009 -9.08463 -8.81037 -8.63215 -8.50337 -6.14946 -4.23385 1.37608 1.79716 3.22802 3.29932 3.32627 3.64025 4.10091 4.27685 4.33438 4.73883 5.09051 5.17015 5.20869 5.53040 5.58749 5.70685 5.94235 6.08330 6.54883 6.63676 6.83348 6.88802 7.03576 7.17812 7.53900 7.74166 7.91961 8.16155 8.19027 8.78311 9.42399 10.90851 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.034465 B = 0.007146 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.214537 B = 3917.547344 C = 4006.997878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 H 0.041 0.959 4 C -0.514 4.514 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 C 0.010 3.990 13 C -0.143 4.143 14 C 0.087 3.913 15 N -0.484 5.484 16 C 0.034 3.966 17 C 0.328 3.672 18 F -0.198 7.198 19 F -0.197 7.197 20 C -0.141 4.141 21 H 0.090 0.910 22 H 0.010 0.990 23 H 0.031 0.969 24 H 0.263 0.737 25 H 0.140 0.860 26 H 0.155 0.845 27 H 0.125 0.875 28 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.375 -3.325 -9.615 10.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.050 3.950 3 H 0.059 0.941 4 C -0.552 4.552 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.724 3.276 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 C 0.002 3.998 13 C -0.162 4.162 14 C -0.070 4.070 15 N -0.194 5.194 16 C -0.104 4.104 17 C 0.273 3.727 18 F -0.179 7.179 19 F -0.178 7.178 20 C -0.161 4.161 21 H 0.108 0.892 22 H 0.029 0.971 23 H 0.050 0.950 24 H 0.073 0.927 25 H 0.158 0.842 26 H 0.172 0.828 27 H 0.142 0.858 28 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 2.610 -3.594 -10.221 11.144 hybrid contribution 0.045 0.103 1.714 1.718 sum 2.655 -3.490 -8.507 9.570 Atomic orbital electron populations 1.21794 0.96942 0.99575 1.00708 1.17989 0.93316 0.95735 0.87919 0.94131 1.21015 1.31895 1.12714 0.89620 0.92358 1.24951 0.94790 0.94937 0.99052 1.69872 1.36167 1.22644 1.23770 0.86518 0.78687 0.80056 0.82351 1.20535 1.21074 1.19797 1.21206 0.90008 0.93611 0.94989 1.22215 1.00502 0.95702 0.97800 1.22567 0.94186 0.99476 0.90752 1.67075 1.13382 1.07496 1.31442 1.21229 1.00697 0.92415 0.96063 1.20032 0.77488 0.83366 0.91798 1.93002 1.80362 1.57517 1.87058 1.93013 1.49026 1.90999 1.84765 1.21864 0.98680 1.01456 0.94095 0.89186 0.97060 0.95025 0.92687 0.84209 0.82803 0.85808 0.84974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.79 37.16 0.33 -2.70 15 2 C 0.07 1.64 2.50 -92.92 -0.23 1.41 15 3 H 0.04 1.05 7.94 -51.93 -0.41 0.63 15 4 C -0.51 -13.40 8.27 -34.44 -0.28 -13.69 15 5 H 0.06 1.52 7.62 -52.48 -0.40 1.12 15 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 15 7 N -0.89 -24.23 11.32 55.43 0.63 -23.60 15 8 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 15 9 H -0.28 -6.42 7.11 56.52 0.40 -6.01 15 10 H -0.29 -6.48 7.11 56.52 0.40 -6.08 15 11 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 12 C 0.01 0.20 4.75 -104.32 -0.50 -0.29 15 13 C -0.14 -2.62 8.87 -39.44 -0.35 -2.97 15 14 C 0.09 1.41 11.18 -17.55 -0.20 1.22 15 15 N -0.48 -8.31 10.25 -9.47 -0.10 -8.40 15 16 C 0.03 0.59 6.28 -82.58 -0.52 0.08 15 17 C 0.33 4.80 5.54 36.01 0.20 5.00 15 18 F -0.20 -3.03 17.25 2.25 0.04 -3.00 15 19 F -0.20 -3.10 17.24 2.25 0.04 -3.06 15 20 C -0.14 -2.73 9.28 -39.44 -0.37 -3.09 15 21 H 0.09 2.27 6.07 -51.93 -0.32 1.95 15 22 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 15 23 H 0.03 0.67 7.48 -51.93 -0.39 0.28 15 24 H 0.26 6.87 8.31 -40.82 -0.34 6.53 15 25 H 0.14 2.47 7.67 -52.49 -0.40 2.07 15 26 H 0.15 1.93 8.06 -52.49 -0.42 1.50 15 27 H 0.12 1.43 8.11 -51.93 -0.42 1.01 15 28 H 0.13 2.48 8.01 -52.49 -0.42 2.06 15 LS Contribution 255.10 15.07 3.84 3.84 Total: -1.00 -27.71 255.10 -5.32 -33.03 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: -2.74 Total: -0.90 kcal Atomic # 6 Polarization: -11.40 SS G_CDS: -2.01 Total: -13.41 kcal Atomic # 7 Polarization: -32.54 SS G_CDS: 0.53 Total: -32.01 kcal Atomic # 9 Polarization: -6.13 SS G_CDS: 0.08 Total: -6.05 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.71 -5.32 -33.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459495.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.616 kcal (2) G-P(sol) polarization free energy of solvation -27.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds