Wall clock time and date at job start Mon Mar 30 2020 03:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47248 * 2 1 4 4 C 1.50696 * 109.47197 * 119.99714 * 2 1 3 5 5 H 1.08003 * 120.00278 * 119.99658 * 4 2 1 6 6 C 1.37881 * 119.99997 * 300.00294 * 4 2 1 7 7 N 1.31513 * 120.00015 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00106 * 180.02562 * 6 4 2 9 9 H 1.48491 * 109.47432 * 89.99620 * 8 6 4 10 10 H 1.48503 * 109.47051 * 210.00004 * 8 6 4 11 11 H 1.48507 * 109.46707 * 329.99621 * 8 6 4 12 12 C 1.50703 * 109.47106 * 239.99649 * 2 1 3 13 13 C 1.38668 * 120.78954 * 299.99720 * 12 2 1 14 14 C 1.38182 * 119.15929 * 180.02562 * 13 12 2 15 15 N 1.31878 * 120.77021 * 359.97438 * 14 13 12 16 16 C 1.31854 * 121.72440 * 0.02562 * 15 14 13 17 17 C 1.50703 * 119.61803 * 179.72121 * 16 15 14 18 18 F 1.39901 * 109.47025 * 120.00721 * 17 16 15 19 19 F 1.39907 * 109.46855 * 239.99978 * 17 16 15 20 20 C 1.38230 * 120.76583 * 0.02562 * 16 15 14 21 21 H 1.08995 * 109.46844 * 300.00247 * 1 2 3 22 22 H 1.08998 * 109.47026 * 60.00202 * 1 2 3 23 23 H 1.08997 * 109.46795 * 180.02562 * 1 2 3 24 24 H 0.96998 * 120.00031 * 180.02562 * 7 6 4 25 25 H 1.08001 * 120.42212 * 0.02562 * 13 12 2 26 26 H 1.08001 * 119.61508 * 180.02562 * 14 13 12 27 27 H 1.08991 * 109.47070 * 0.02562 * 17 16 15 28 28 H 1.07992 * 120.42429 * 179.97438 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1193 4.0081 9 1 3.6304 -0.5438 4.4119 10 1 1.3444 -0.9488 5.1124 11 1 2.4880 -2.5652 3.7123 12 6 2.0324 -0.7105 -1.2304 13 6 1.7075 -2.0378 -1.4660 14 6 2.1868 -2.6564 -2.6049 15 7 2.9439 -1.9993 -3.4618 16 6 3.2727 -0.7369 -3.2702 17 6 4.1458 -0.0336 -4.2773 18 9 3.4583 1.0651 -4.8039 19 9 5.3178 0.4058 -3.6522 20 6 2.8311 -0.0528 -2.1531 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 0.7094 1.1619 3.4843 25 1 1.0876 -2.5813 -0.7683 26 1 1.9380 -3.6899 -2.7958 27 1 4.3995 -0.7230 -5.0824 28 1 3.1042 0.9809 -2.0015 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260459495.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:14 Heat of formation + Delta-G solvation = -96.753056 kcal Electronic energy + Delta-G solvation = -15261.271756 eV Core-core repulsion = 12332.753318 eV Total energy + Delta-G solvation = -2928.518439 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -50.04735 -48.04891 -41.21718 -36.89087 -34.01372 -32.96174 -30.95465 -27.74053 -27.27997 -24.75489 -23.86434 -21.55931 -18.74441 -18.45777 -18.29314 -18.04234 -17.11421 -16.61343 -16.48773 -15.63285 -15.15893 -14.82781 -14.55563 -14.43291 -14.22282 -14.02096 -13.54386 -13.04938 -12.90123 -12.85951 -12.46931 -12.27367 -12.04458 -11.82165 -11.21974 -10.56327 -10.51271 -10.27773 -10.18323 -8.15850 -6.30918 -0.03159 0.32712 1.41212 1.43049 1.52371 2.38879 2.41899 2.72310 3.12946 3.15914 3.50188 3.85776 4.01577 4.07244 4.20915 4.24683 4.44707 4.69040 4.83753 4.92178 5.11713 5.17970 5.32014 5.56313 5.67558 5.85532 5.98013 6.22901 6.76539 6.78540 7.37955 8.89185 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.034465 B = 0.007146 C = 0.006986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.214537 B = 3917.547344 C = 4006.997878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.068 3.932 3 H 0.007 0.993 4 C -0.526 4.526 5 H 0.055 0.945 6 C 0.018 3.982 7 N -0.914 5.914 8 Si 0.957 3.043 9 H -0.280 1.280 10 H -0.282 1.282 11 H -0.265 1.265 12 C -0.014 4.014 13 C -0.149 4.149 14 C 0.101 3.899 15 N -0.479 5.479 16 C 0.034 3.966 17 C 0.331 3.669 18 F -0.203 7.203 19 F -0.204 7.204 20 C -0.159 4.159 21 H 0.063 0.937 22 H 0.024 0.976 23 H 0.041 0.959 24 H 0.264 0.736 25 H 0.145 0.855 26 H 0.199 0.801 27 H 0.166 0.834 28 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.858 -5.154 -10.626 12.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 H 0.025 0.975 4 C -0.564 4.564 5 H 0.073 0.927 6 C -0.182 4.182 7 N -0.553 5.553 8 Si 0.782 3.218 9 H -0.206 1.206 10 H -0.207 1.207 11 H -0.189 1.189 12 C -0.022 4.022 13 C -0.168 4.168 14 C -0.056 4.056 15 N -0.189 5.189 16 C -0.104 4.104 17 C 0.277 3.723 18 F -0.184 7.184 19 F -0.186 7.186 20 C -0.180 4.180 21 H 0.082 0.918 22 H 0.043 0.957 23 H 0.060 0.940 24 H 0.073 0.927 25 H 0.163 0.837 26 H 0.216 0.784 27 H 0.183 0.817 28 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.096 -5.421 -11.243 12.860 hybrid contribution -0.107 0.671 1.980 2.093 sum 2.989 -4.751 -9.263 10.831 Atomic orbital electron populations 1.21630 0.96424 0.99940 0.99993 1.17821 0.93837 0.94134 0.89210 0.97502 1.21288 1.31700 1.12666 0.90745 0.92662 1.25706 0.95015 0.95612 1.01835 1.69999 1.37169 1.23852 1.24304 0.85569 0.77950 0.79285 0.78974 1.20565 1.20701 1.18916 1.20974 0.91781 0.94940 0.94513 1.22324 1.00869 0.94670 0.98951 1.23213 0.92271 1.00990 0.89124 1.67241 1.13270 1.07055 1.31368 1.21625 1.00318 0.92644 0.95812 1.20331 0.76558 0.83524 0.91924 1.92994 1.80535 1.57924 1.86950 1.93000 1.49325 1.91125 1.85106 1.21887 0.99435 1.01509 0.95119 0.91830 0.95712 0.93984 0.92709 0.83704 0.78389 0.81731 0.85737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.66 8.79 71.98 0.63 -5.03 15 2 C 0.07 3.35 2.50 -12.29 -0.03 3.32 15 3 H 0.01 0.37 7.94 -2.39 -0.02 0.35 15 4 C -0.53 -27.73 8.27 25.60 0.21 -27.52 15 5 H 0.06 2.88 7.62 -2.91 -0.02 2.86 15 6 C 0.02 0.95 5.30 84.66 0.45 1.39 15 7 N -0.91 -51.04 11.32 21.45 0.24 -50.80 15 8 Si 0.96 42.11 29.54 68.60 2.03 44.13 15 9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15 10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15 11 H -0.26 -11.20 7.11 99.48 0.71 -10.50 15 12 C -0.01 -0.59 4.75 -19.67 -0.09 -0.69 15 13 C -0.15 -5.22 8.87 22.36 0.20 -5.02 15 14 C 0.10 2.93 11.18 84.67 0.95 3.88 15 15 N -0.48 -14.92 10.25 -183.88 -1.89 -16.81 15 16 C 0.03 1.13 6.28 42.55 0.27 1.39 15 17 C 0.33 8.93 5.54 71.24 0.39 9.33 15 18 F -0.20 -5.88 17.25 44.97 0.78 -5.10 15 19 F -0.20 -6.11 17.24 44.97 0.78 -5.34 15 20 C -0.16 -6.16 9.28 22.36 0.21 -5.95 15 21 H 0.06 3.28 6.07 -2.39 -0.01 3.27 15 22 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15 23 H 0.04 1.80 7.48 -2.39 -0.02 1.78 15 24 H 0.26 14.01 8.31 -92.71 -0.77 13.23 15 25 H 0.15 4.87 7.67 -2.91 -0.02 4.85 15 26 H 0.20 3.95 8.06 -2.91 -0.02 3.93 15 27 H 0.17 3.17 8.11 -2.39 -0.02 3.15 15 28 H 0.12 4.85 8.01 -2.91 -0.02 4.83 15 Total: -1.00 -59.31 255.10 6.29 -53.02 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: 1.17 Total: 5.78 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 3.18 Total: -24.89 kcal Atomic # 7 Polarization: -65.97 SS G_CDS: -1.64 Total: -67.61 kcal Atomic # 9 Polarization: -11.99 SS G_CDS: 1.55 Total: -10.44 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -59.31 6.29 -53.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260459495.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.732 kcal (2) G-P(sol) polarization free energy of solvation -59.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds