Wall clock time and date at job start Mon Mar 30 2020 03:11:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08997 * 109.47248 * 2 1
4 4 C 1.50696 * 109.47197 * 119.99714 * 2 1 3
5 5 H 1.08003 * 120.00278 * 119.99658 * 4 2 1
6 6 C 1.37881 * 119.99997 * 300.00294 * 4 2 1
7 7 N 1.31513 * 120.00015 * 359.97438 * 6 4 2
8 8 Si 1.86806 * 120.00106 * 180.02562 * 6 4 2
9 9 H 1.48491 * 109.47432 * 89.99620 * 8 6 4
10 10 H 1.48503 * 109.47051 * 210.00004 * 8 6 4
11 11 H 1.48507 * 109.46707 * 329.99621 * 8 6 4
12 12 C 1.50703 * 109.47106 * 239.99649 * 2 1 3
13 13 C 1.38668 * 120.78954 * 299.99720 * 12 2 1
14 14 C 1.38182 * 119.15929 * 180.02562 * 13 12 2
15 15 N 1.31878 * 120.77021 * 359.97438 * 14 13 12
16 16 C 1.31854 * 121.72440 * 0.02562 * 15 14 13
17 17 C 1.50703 * 119.61803 * 179.72121 * 16 15 14
18 18 F 1.39901 * 109.47025 * 120.00721 * 17 16 15
19 19 F 1.39907 * 109.46855 * 239.99978 * 17 16 15
20 20 C 1.38230 * 120.76583 * 0.02562 * 16 15 14
21 21 H 1.08995 * 109.46844 * 300.00247 * 1 2 3
22 22 H 1.08998 * 109.47026 * 60.00202 * 1 2 3
23 23 H 1.08997 * 109.46795 * 180.02562 * 1 2 3
24 24 H 0.96998 * 120.00031 * 180.02562 * 7 6 4
25 25 H 1.08001 * 120.42212 * 0.02562 * 13 12 2
26 26 H 1.08001 * 119.61508 * 180.02562 * 14 13 12
27 27 H 1.08991 * 109.47070 * 0.02562 * 17 16 15
28 28 H 1.07992 * 120.42429 * 179.97438 * 20 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0324 -0.7103 1.2305
5 1 2.6532 -1.5885 1.1314
6 6 1.6992 -0.2392 2.4827
7 7 0.9435 0.8303 2.6034
8 14 2.3225 -1.1193 4.0081
9 1 3.6304 -0.5438 4.4119
10 1 1.3444 -0.9488 5.1124
11 1 2.4880 -2.5652 3.7123
12 6 2.0324 -0.7105 -1.2304
13 6 1.7075 -2.0378 -1.4660
14 6 2.1868 -2.6564 -2.6049
15 7 2.9439 -1.9993 -3.4618
16 6 3.2727 -0.7369 -3.2702
17 6 4.1458 -0.0336 -4.2773
18 9 3.4583 1.0651 -4.8039
19 9 5.3178 0.4058 -3.6522
20 6 2.8311 -0.0528 -2.1531
21 1 -0.3633 0.5139 0.8899
22 1 -0.3633 0.5138 -0.8900
23 1 -0.3633 -1.0277 0.0005
24 1 0.7094 1.1619 3.4843
25 1 1.0876 -2.5813 -0.7683
26 1 1.9380 -3.6899 -2.7958
27 1 4.3995 -0.7230 -5.0824
28 1 3.1042 0.9809 -2.0015
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260459495.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:11:14
Heat of formation + Delta-G solvation = -96.753056 kcal
Electronic energy + Delta-G solvation = -15261.271756 eV
Core-core repulsion = 12332.753318 eV
Total energy + Delta-G solvation = -2928.518439 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 227.082 amu
Computer time = 0.20 seconds
Orbital eigenvalues (eV)
-50.04735 -48.04891 -41.21718 -36.89087 -34.01372 -32.96174 -30.95465 -27.74053
-27.27997 -24.75489 -23.86434 -21.55931 -18.74441 -18.45777 -18.29314 -18.04234
-17.11421 -16.61343 -16.48773 -15.63285 -15.15893 -14.82781 -14.55563 -14.43291
-14.22282 -14.02096 -13.54386 -13.04938 -12.90123 -12.85951 -12.46931 -12.27367
-12.04458 -11.82165 -11.21974 -10.56327 -10.51271 -10.27773 -10.18323 -8.15850
-6.30918 -0.03159 0.32712 1.41212 1.43049 1.52371 2.38879 2.41899
2.72310 3.12946 3.15914 3.50188 3.85776 4.01577 4.07244 4.20915
4.24683 4.44707 4.69040 4.83753 4.92178 5.11713 5.17970 5.32014
5.56313 5.67558 5.85532 5.98013 6.22901 6.76539 6.78540 7.37955
8.89185
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.034465 B = 0.007146 C = 0.006986
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 812.214537 B = 3917.547344 C = 4006.997878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 C 0.068 3.932
3 H 0.007 0.993
4 C -0.526 4.526
5 H 0.055 0.945
6 C 0.018 3.982
7 N -0.914 5.914
8 Si 0.957 3.043
9 H -0.280 1.280
10 H -0.282 1.282
11 H -0.265 1.265
12 C -0.014 4.014
13 C -0.149 4.149
14 C 0.101 3.899
15 N -0.479 5.479
16 C 0.034 3.966
17 C 0.331 3.669
18 F -0.203 7.203
19 F -0.204 7.204
20 C -0.159 4.159
21 H 0.063 0.937
22 H 0.024 0.976
23 H 0.041 0.959
24 H 0.264 0.736
25 H 0.145 0.855
26 H 0.199 0.801
27 H 0.166 0.834
28 H 0.125 0.875
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.858 -5.154 -10.626 12.151
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.180 4.180
2 C 0.050 3.950
3 H 0.025 0.975
4 C -0.564 4.564
5 H 0.073 0.927
6 C -0.182 4.182
7 N -0.553 5.553
8 Si 0.782 3.218
9 H -0.206 1.206
10 H -0.207 1.207
11 H -0.189 1.189
12 C -0.022 4.022
13 C -0.168 4.168
14 C -0.056 4.056
15 N -0.189 5.189
16 C -0.104 4.104
17 C 0.277 3.723
18 F -0.184 7.184
19 F -0.186 7.186
20 C -0.180 4.180
21 H 0.082 0.918
22 H 0.043 0.957
23 H 0.060 0.940
24 H 0.073 0.927
25 H 0.163 0.837
26 H 0.216 0.784
27 H 0.183 0.817
28 H 0.143 0.857
Dipole moment (debyes) X Y Z Total
from point charges 3.096 -5.421 -11.243 12.860
hybrid contribution -0.107 0.671 1.980 2.093
sum 2.989 -4.751 -9.263 10.831
Atomic orbital electron populations
1.21630 0.96424 0.99940 0.99993 1.17821 0.93837 0.94134 0.89210
0.97502 1.21288 1.31700 1.12666 0.90745 0.92662 1.25706 0.95015
0.95612 1.01835 1.69999 1.37169 1.23852 1.24304 0.85569 0.77950
0.79285 0.78974 1.20565 1.20701 1.18916 1.20974 0.91781 0.94940
0.94513 1.22324 1.00869 0.94670 0.98951 1.23213 0.92271 1.00990
0.89124 1.67241 1.13270 1.07055 1.31368 1.21625 1.00318 0.92644
0.95812 1.20331 0.76558 0.83524 0.91924 1.92994 1.80535 1.57924
1.86950 1.93000 1.49325 1.91125 1.85106 1.21887 0.99435 1.01509
0.95119 0.91830 0.95712 0.93984 0.92709 0.83704 0.78389 0.81731
0.85737
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.66 8.79 71.98 0.63 -5.03 15
2 C 0.07 3.35 2.50 -12.29 -0.03 3.32 15
3 H 0.01 0.37 7.94 -2.39 -0.02 0.35 15
4 C -0.53 -27.73 8.27 25.60 0.21 -27.52 15
5 H 0.06 2.88 7.62 -2.91 -0.02 2.86 15
6 C 0.02 0.95 5.30 84.66 0.45 1.39 15
7 N -0.91 -51.04 11.32 21.45 0.24 -50.80 15
8 Si 0.96 42.11 29.54 68.60 2.03 44.13 15
9 H -0.28 -12.25 7.11 99.48 0.71 -11.54 15
10 H -0.28 -12.14 7.11 99.48 0.71 -11.43 15
11 H -0.26 -11.20 7.11 99.48 0.71 -10.50 15
12 C -0.01 -0.59 4.75 -19.67 -0.09 -0.69 15
13 C -0.15 -5.22 8.87 22.36 0.20 -5.02 15
14 C 0.10 2.93 11.18 84.67 0.95 3.88 15
15 N -0.48 -14.92 10.25 -183.88 -1.89 -16.81 15
16 C 0.03 1.13 6.28 42.55 0.27 1.39 15
17 C 0.33 8.93 5.54 71.24 0.39 9.33 15
18 F -0.20 -5.88 17.25 44.97 0.78 -5.10 15
19 F -0.20 -6.11 17.24 44.97 0.78 -5.34 15
20 C -0.16 -6.16 9.28 22.36 0.21 -5.95 15
21 H 0.06 3.28 6.07 -2.39 -0.01 3.27 15
22 H 0.02 1.03 8.14 -2.39 -0.02 1.01 15
23 H 0.04 1.80 7.48 -2.39 -0.02 1.78 15
24 H 0.26 14.01 8.31 -92.71 -0.77 13.23 15
25 H 0.15 4.87 7.67 -2.91 -0.02 4.85 15
26 H 0.20 3.95 8.06 -2.91 -0.02 3.93 15
27 H 0.17 3.17 8.11 -2.39 -0.02 3.15 15
28 H 0.12 4.85 8.01 -2.91 -0.02 4.83 15
Total: -1.00 -59.31 255.10 6.29 -53.02
By element:
Atomic # 1 Polarization: 4.61 SS G_CDS: 1.17 Total: 5.78 kcal
Atomic # 6 Polarization: -28.07 SS G_CDS: 3.18 Total: -24.89 kcal
Atomic # 7 Polarization: -65.97 SS G_CDS: -1.64 Total: -67.61 kcal
Atomic # 9 Polarization: -11.99 SS G_CDS: 1.55 Total: -10.44 kcal
Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal
Total: -59.31 6.29 -53.02 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260459495.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -43.732 kcal
(2) G-P(sol) polarization free energy of solvation -59.309 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.041 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.288 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.021 kcal
(6) G-S(sol) free energy of system = (1) + (5) -96.753 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds