Wall clock time and date at job start Mon Mar 30 2020 03:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80998 * 1 3 3 C 1.76196 * 99.99977 * 2 1 4 4 N 1.31264 * 125.80337 * 359.95775 * 3 2 1 5 5 C 1.34359 * 109.30783 * 179.79006 * 4 3 2 6 6 C 1.34391 * 108.34316 * 0.40359 * 5 4 3 7 7 C 1.50696 * 126.52230 * 179.87153 * 6 5 4 8 8 H 1.08998 * 109.47669 * 204.68698 * 7 6 5 9 9 N 1.46894 * 109.47259 * 324.68762 * 7 6 5 10 10 C 1.50706 * 109.47259 * 84.68415 * 7 6 5 11 11 H 1.08000 * 119.99302 * 0.02562 * 10 7 6 12 12 C 1.37871 * 120.00436 * 179.72713 * 10 7 6 13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 7 15 15 H 1.48496 * 109.46683 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47426 * 119.99743 * 14 12 10 17 17 H 1.48501 * 109.46833 * 239.99986 * 14 12 10 18 18 N 1.36112 * 125.80132 * 180.02562 * 3 2 1 19 19 C 1.46496 * 126.50432 * 359.96291 * 18 3 2 20 20 H 1.08998 * 109.46892 * 60.00392 * 1 2 3 21 21 H 1.09001 * 109.47129 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47261 * 300.00126 * 1 2 3 23 23 H 1.07997 * 125.82961 * 180.24469 * 5 4 3 24 24 H 1.00901 * 111.00146 * 59.99612 * 9 7 6 25 25 H 1.00907 * 111.00346 * 183.95366 * 9 7 6 26 26 H 0.97004 * 120.00247 * 180.02562 * 13 12 10 27 27 H 1.08994 * 109.47401 * 270.00212 * 19 18 3 28 28 H 1.09005 * 109.46859 * 30.00193 * 19 18 3 29 29 H 1.09001 * 109.47590 * 149.99694 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7352 0.0000 4 7 1.2009 2.6763 -0.0008 5 6 1.8003 3.8788 0.0041 6 6 3.1306 3.6882 -0.0008 7 6 4.1901 4.7599 -0.0007 8 1 5.1082 4.3633 -0.4342 9 7 3.7281 5.9053 -0.7959 10 6 4.4543 5.2049 1.4147 11 1 3.9097 4.7562 2.2323 12 6 5.3955 6.1804 1.6663 13 7 6.0632 6.7222 0.6712 14 14 5.7235 6.7316 3.4208 15 1 4.8482 5.9727 4.3497 16 1 7.1463 6.4774 3.7617 17 1 5.4363 8.1832 3.5454 18 7 3.3414 2.3276 -0.0005 19 6 4.6385 1.6468 -0.0004 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.2987 4.8352 0.0085 24 1 2.8776 6.2911 -0.4140 25 1 4.4462 6.6108 -0.8649 26 1 6.7257 7.4083 0.8482 27 1 4.9604 1.4784 1.0273 28 1 4.5465 0.6896 -0.5138 29 1 5.3738 2.2656 -0.5147 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260472283.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:32 Heat of formation + Delta-G solvation = 32.530023 kcal Electronic energy + Delta-G solvation = -13690.535205 eV Core-core repulsion = 11353.756039 eV Total energy + Delta-G solvation = -2336.779166 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.70605 -36.74952 -34.88848 -33.47043 -30.33343 -29.49628 -27.92171 -27.81538 -24.51851 -22.56893 -20.74584 -18.72978 -18.53414 -17.21088 -16.65111 -16.45411 -15.65418 -15.12882 -14.81547 -14.65419 -14.42438 -14.27662 -13.75177 -13.55395 -13.43967 -13.19771 -12.88073 -12.83904 -12.07422 -12.00597 -11.66246 -11.03918 -10.75005 -10.46450 -10.13118 -9.29043 -8.35749 -8.09497 -6.44476 0.31383 1.07230 1.26438 1.34218 1.38764 1.49169 2.05981 2.11704 2.36253 2.99953 3.89602 3.95266 4.26211 4.34746 4.36840 4.40862 4.55025 4.72225 4.78476 4.96672 5.01151 5.57907 5.61167 5.79991 5.96479 6.16679 6.53857 6.80947 6.95555 7.05844 7.32611 8.76366 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.042235 B = 0.007228 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.805504 B = 3872.889818 C = 3977.164785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.017 6.017 3 C 0.151 3.849 4 N -0.507 5.507 5 C -0.049 4.049 6 C 0.034 3.966 7 C 0.287 3.713 8 H 0.020 0.980 9 N -0.838 5.838 10 C -0.558 4.558 11 H 0.039 0.961 12 C 0.031 3.969 13 N -0.910 5.910 14 Si 0.960 3.040 15 H -0.278 1.278 16 H -0.276 1.276 17 H -0.275 1.275 18 N -0.451 5.451 19 C 0.074 3.926 20 H 0.083 0.917 21 H 0.139 0.861 22 H 0.080 0.920 23 H 0.167 0.833 24 H 0.322 0.678 25 H 0.352 0.648 26 H 0.271 0.729 27 H 0.082 0.918 28 H 0.109 0.891 29 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.176 -11.379 -0.634 12.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S 0.210 5.790 3 C -0.217 4.217 4 N -0.230 5.230 5 C -0.197 4.197 6 C -0.084 4.084 7 C 0.175 3.825 8 H 0.038 0.962 9 N -0.368 5.368 10 C -0.598 4.598 11 H 0.058 0.942 12 C -0.171 4.171 13 N -0.549 5.549 14 Si 0.786 3.214 15 H -0.203 1.203 16 H -0.202 1.202 17 H -0.201 1.201 18 N -0.137 5.137 19 C -0.068 4.068 20 H 0.102 0.898 21 H 0.158 0.842 22 H 0.099 0.901 23 H 0.184 0.816 24 H 0.132 0.868 25 H 0.167 0.833 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.127 0.873 29 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.060 -12.913 -1.306 13.930 hybrid contribution 0.576 2.488 1.751 3.096 sum -4.484 -10.426 0.445 11.358 Atomic orbital electron populations 1.23507 0.91368 1.07936 1.06514 1.84791 1.10436 0.89684 1.94129 1.25475 0.83077 1.01115 1.12052 1.70514 1.31552 0.98680 1.22284 1.21859 0.90826 0.96104 1.10902 1.21936 0.97796 0.83675 1.04997 1.17091 0.88221 0.85939 0.91201 0.96247 1.59276 1.09399 1.13167 1.55006 1.21875 1.22418 1.22041 0.93475 0.94236 1.25644 0.94544 0.95793 1.01093 1.69821 1.25292 1.27498 1.32303 0.85481 0.77883 0.78106 0.79963 1.20305 1.20151 1.20097 1.45369 1.07349 1.05595 1.55417 1.22164 0.81734 0.98476 1.04406 0.89839 0.84248 0.90055 0.81563 0.86786 0.83252 0.91969 0.89917 0.87285 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 10.01 113.37 1.13 -1.48 15 2 S -0.02 -0.45 22.28 -56.49 -1.26 -1.71 15 3 C 0.15 5.78 7.96 179.70 1.43 7.21 15 4 N -0.51 -21.33 10.60 -196.47 -2.08 -23.41 15 5 C -0.05 -2.20 11.19 83.43 0.93 -1.27 15 6 C 0.03 1.59 5.95 40.76 0.24 1.83 15 7 C 0.29 14.43 3.02 43.42 0.13 14.56 15 8 H 0.02 1.07 7.12 -2.39 -0.02 1.05 15 9 N -0.84 -40.28 9.05 -174.96 -1.58 -41.86 15 10 C -0.56 -29.93 8.71 25.60 0.22 -29.71 15 11 H 0.04 2.22 7.74 -2.91 -0.02 2.19 15 12 C 0.03 1.60 5.38 84.65 0.46 2.05 15 13 N -0.91 -48.53 11.56 21.45 0.25 -48.28 15 14 Si 0.96 42.14 29.54 68.60 2.03 44.17 15 15 H -0.28 -12.37 7.11 99.48 0.71 -11.67 15 16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15 18 N -0.45 -18.23 3.20 -532.71 -1.71 -19.94 15 19 C 0.07 2.36 10.83 127.77 1.38 3.74 15 20 H 0.08 1.89 8.14 -2.40 -0.02 1.87 15 21 H 0.14 1.83 8.14 -2.39 -0.02 1.81 15 22 H 0.08 1.88 8.14 -2.40 -0.02 1.86 15 23 H 0.17 7.10 7.49 -2.91 -0.02 7.08 15 24 H 0.32 14.76 8.07 -89.69 -0.72 14.04 15 25 H 0.35 17.77 7.10 -89.69 -0.64 17.14 15 26 H 0.27 13.66 8.31 -92.71 -0.77 12.89 15 27 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15 28 H 0.11 2.74 7.73 -2.38 -0.02 2.72 15 29 H 0.08 2.79 7.14 -2.39 -0.02 2.77 15 Total: -1.00 -61.42 263.87 1.39 -60.03 By element: Atomic # 1 Polarization: 34.27 SS G_CDS: -0.19 Total: 34.08 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: 5.93 Total: -3.07 kcal Atomic # 7 Polarization: -128.38 SS G_CDS: -5.13 Total: -133.50 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: -0.45 SS G_CDS: -1.26 Total: -1.71 kcal Total: -61.42 1.39 -60.03 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472283.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.562 kcal (2) G-P(sol) polarization free energy of solvation -61.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds