Wall clock time and date at job start Mon Mar 30 2020 03:14:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.80998 * 1
3 3 C 1.76196 * 99.99977 * 2 1
4 4 N 1.31264 * 125.80337 * 359.95775 * 3 2 1
5 5 C 1.34359 * 109.30783 * 179.79006 * 4 3 2
6 6 C 1.34391 * 108.34316 * 0.40359 * 5 4 3
7 7 C 1.50696 * 126.52230 * 179.87153 * 6 5 4
8 8 H 1.08998 * 109.47669 * 204.68698 * 7 6 5
9 9 N 1.46894 * 109.47259 * 324.68762 * 7 6 5
10 10 C 1.50706 * 109.47259 * 84.68415 * 7 6 5
11 11 H 1.08000 * 119.99302 * 0.02562 * 10 7 6
12 12 C 1.37871 * 120.00436 * 179.72713 * 10 7 6
13 13 N 1.31515 * 119.99684 * 359.97438 * 12 10 7
14 14 Si 1.86800 * 120.00405 * 180.02562 * 12 10 7
15 15 H 1.48496 * 109.46683 * 359.97438 * 14 12 10
16 16 H 1.48492 * 109.47426 * 119.99743 * 14 12 10
17 17 H 1.48501 * 109.46833 * 239.99986 * 14 12 10
18 18 N 1.36112 * 125.80132 * 180.02562 * 3 2 1
19 19 C 1.46496 * 126.50432 * 359.96291 * 18 3 2
20 20 H 1.08998 * 109.46892 * 60.00392 * 1 2 3
21 21 H 1.09001 * 109.47129 * 179.97438 * 1 2 3
22 22 H 1.08995 * 109.47261 * 300.00126 * 1 2 3
23 23 H 1.07997 * 125.82961 * 180.24469 * 5 4 3
24 24 H 1.00901 * 111.00146 * 59.99612 * 9 7 6
25 25 H 1.00907 * 111.00346 * 183.95366 * 9 7 6
26 26 H 0.97004 * 120.00247 * 180.02562 * 13 12 10
27 27 H 1.08994 * 109.47401 * 270.00212 * 19 18 3
28 28 H 1.09005 * 109.46859 * 30.00193 * 19 18 3
29 29 H 1.09001 * 109.47590 * 149.99694 * 19 18 3
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8100 0.0000 0.0000
3 6 2.1159 1.7352 0.0000
4 7 1.2009 2.6763 -0.0008
5 6 1.8003 3.8788 0.0041
6 6 3.1306 3.6882 -0.0008
7 6 4.1901 4.7599 -0.0007
8 1 5.1082 4.3633 -0.4342
9 7 3.7281 5.9053 -0.7959
10 6 4.4543 5.2049 1.4147
11 1 3.9097 4.7562 2.2323
12 6 5.3955 6.1804 1.6663
13 7 6.0632 6.7222 0.6712
14 14 5.7235 6.7316 3.4208
15 1 4.8482 5.9727 4.3497
16 1 7.1463 6.4774 3.7617
17 1 5.4363 8.1832 3.5454
18 7 3.3414 2.3276 -0.0005
19 6 4.6385 1.6468 -0.0004
20 1 -0.3633 0.5138 -0.8900
21 1 -0.3633 -1.0277 -0.0005
22 1 -0.3633 0.5138 0.8899
23 1 1.2987 4.8352 0.0085
24 1 2.8776 6.2911 -0.4140
25 1 4.4462 6.6108 -0.8649
26 1 6.7257 7.4083 0.8482
27 1 4.9604 1.4784 1.0273
28 1 4.5465 0.6896 -0.5138
29 1 5.3738 2.2656 -0.5147
RHF calculation, no. of doubly occupied orbitals= 39
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260472283.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:14:32
Heat of formation + Delta-G solvation = 32.530023 kcal
Electronic energy + Delta-G solvation = -13690.535205 eV
Core-core repulsion = 11353.756039 eV
Total energy + Delta-G solvation = -2336.779166 eV
No. of doubly occupied orbitals = 39
Molecular weight
(most abundant/longest-lived isotopes) = 227.079 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-42.70605 -36.74952 -34.88848 -33.47043 -30.33343 -29.49628 -27.92171 -27.81538
-24.51851 -22.56893 -20.74584 -18.72978 -18.53414 -17.21088 -16.65111 -16.45411
-15.65418 -15.12882 -14.81547 -14.65419 -14.42438 -14.27662 -13.75177 -13.55395
-13.43967 -13.19771 -12.88073 -12.83904 -12.07422 -12.00597 -11.66246 -11.03918
-10.75005 -10.46450 -10.13118 -9.29043 -8.35749 -8.09497 -6.44476 0.31383
1.07230 1.26438 1.34218 1.38764 1.49169 2.05981 2.11704 2.36253
2.99953 3.89602 3.95266 4.26211 4.34746 4.36840 4.40862 4.55025
4.72225 4.78476 4.96672 5.01151 5.57907 5.61167 5.79991 5.96479
6.16679 6.53857 6.80947 6.95555 7.05844 7.32611 8.76366
Molecular weight = 227.08amu
Principal moments of inertia in cm(-1)
A = 0.042235 B = 0.007228 C = 0.007039
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 662.805504 B = 3872.889818 C = 3977.164785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 S -0.017 6.017
3 C 0.151 3.849
4 N -0.507 5.507
5 C -0.049 4.049
6 C 0.034 3.966
7 C 0.287 3.713
8 H 0.020 0.980
9 N -0.838 5.838
10 C -0.558 4.558
11 H 0.039 0.961
12 C 0.031 3.969
13 N -0.910 5.910
14 Si 0.960 3.040
15 H -0.278 1.278
16 H -0.276 1.276
17 H -0.275 1.275
18 N -0.451 5.451
19 C 0.074 3.926
20 H 0.083 0.917
21 H 0.139 0.861
22 H 0.080 0.920
23 H 0.167 0.833
24 H 0.322 0.678
25 H 0.352 0.648
26 H 0.271 0.729
27 H 0.082 0.918
28 H 0.109 0.891
29 H 0.083 0.917
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.176 -11.379 -0.634 12.517
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.293 4.293
2 S 0.210 5.790
3 C -0.217 4.217
4 N -0.230 5.230
5 C -0.197 4.197
6 C -0.084 4.084
7 C 0.175 3.825
8 H 0.038 0.962
9 N -0.368 5.368
10 C -0.598 4.598
11 H 0.058 0.942
12 C -0.171 4.171
13 N -0.549 5.549
14 Si 0.786 3.214
15 H -0.203 1.203
16 H -0.202 1.202
17 H -0.201 1.201
18 N -0.137 5.137
19 C -0.068 4.068
20 H 0.102 0.898
21 H 0.158 0.842
22 H 0.099 0.901
23 H 0.184 0.816
24 H 0.132 0.868
25 H 0.167 0.833
26 H 0.080 0.920
27 H 0.101 0.899
28 H 0.127 0.873
29 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges -5.060 -12.913 -1.306 13.930
hybrid contribution 0.576 2.488 1.751 3.096
sum -4.484 -10.426 0.445 11.358
Atomic orbital electron populations
1.23507 0.91368 1.07936 1.06514 1.84791 1.10436 0.89684 1.94129
1.25475 0.83077 1.01115 1.12052 1.70514 1.31552 0.98680 1.22284
1.21859 0.90826 0.96104 1.10902 1.21936 0.97796 0.83675 1.04997
1.17091 0.88221 0.85939 0.91201 0.96247 1.59276 1.09399 1.13167
1.55006 1.21875 1.22418 1.22041 0.93475 0.94236 1.25644 0.94544
0.95793 1.01093 1.69821 1.25292 1.27498 1.32303 0.85481 0.77883
0.78106 0.79963 1.20305 1.20151 1.20097 1.45369 1.07349 1.05595
1.55417 1.22164 0.81734 0.98476 1.04406 0.89839 0.84248 0.90055
0.81563 0.86786 0.83252 0.91969 0.89917 0.87285 0.89800
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -2.61 10.01 113.37 1.13 -1.48 15
2 S -0.02 -0.45 22.28 -56.49 -1.26 -1.71 15
3 C 0.15 5.78 7.96 179.70 1.43 7.21 15
4 N -0.51 -21.33 10.60 -196.47 -2.08 -23.41 15
5 C -0.05 -2.20 11.19 83.43 0.93 -1.27 15
6 C 0.03 1.59 5.95 40.76 0.24 1.83 15
7 C 0.29 14.43 3.02 43.42 0.13 14.56 15
8 H 0.02 1.07 7.12 -2.39 -0.02 1.05 15
9 N -0.84 -40.28 9.05 -174.96 -1.58 -41.86 15
10 C -0.56 -29.93 8.71 25.60 0.22 -29.71 15
11 H 0.04 2.22 7.74 -2.91 -0.02 2.19 15
12 C 0.03 1.60 5.38 84.65 0.46 2.05 15
13 N -0.91 -48.53 11.56 21.45 0.25 -48.28 15
14 Si 0.96 42.14 29.54 68.60 2.03 44.17 15
15 H -0.28 -12.37 7.11 99.48 0.71 -11.67 15
16 H -0.28 -11.79 7.11 99.48 0.71 -11.08 15
17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 15
18 N -0.45 -18.23 3.20 -532.71 -1.71 -19.94 15
19 C 0.07 2.36 10.83 127.77 1.38 3.74 15
20 H 0.08 1.89 8.14 -2.40 -0.02 1.87 15
21 H 0.14 1.83 8.14 -2.39 -0.02 1.81 15
22 H 0.08 1.88 8.14 -2.40 -0.02 1.86 15
23 H 0.17 7.10 7.49 -2.91 -0.02 7.08 15
24 H 0.32 14.76 8.07 -89.69 -0.72 14.04 15
25 H 0.35 17.77 7.10 -89.69 -0.64 17.14 15
26 H 0.27 13.66 8.31 -92.71 -0.77 12.89 15
27 H 0.08 2.51 8.14 -2.39 -0.02 2.49 15
28 H 0.11 2.74 7.73 -2.38 -0.02 2.72 15
29 H 0.08 2.79 7.14 -2.39 -0.02 2.77 15
Total: -1.00 -61.42 263.87 1.39 -60.03
By element:
Atomic # 1 Polarization: 34.27 SS G_CDS: -0.19 Total: 34.08 kcal
Atomic # 6 Polarization: -9.00 SS G_CDS: 5.93 Total: -3.07 kcal
Atomic # 7 Polarization: -128.38 SS G_CDS: -5.13 Total: -133.50 kcal
Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal
Atomic # 16 Polarization: -0.45 SS G_CDS: -1.26 Total: -1.71 kcal
Total: -61.42 1.39 -60.03 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260472283.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 92.562 kcal
(2) G-P(sol) polarization free energy of solvation -61.424 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.138 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.392 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.032 kcal
(6) G-S(sol) free energy of system = (1) + (5) 32.530 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.20 seconds