Wall clock time and date at job start Mon Mar 30 2020 03:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76207 * 99.99909 * 2 1 4 4 N 1.31262 * 125.80252 * 0.02562 * 3 2 1 5 5 C 1.34365 * 109.30935 * 179.97438 * 4 3 2 6 6 C 1.34386 * 108.34065 * 0.02562 * 5 4 3 7 7 C 1.50699 * 126.52139 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.47620 * 155.22637 * 7 6 5 9 9 N 1.46905 * 109.46894 * 35.22924 * 7 6 5 10 10 C 1.50700 * 109.47213 * 275.23268 * 7 6 5 11 11 H 1.07995 * 119.99744 * 359.97438 * 10 7 6 12 12 C 1.37874 * 119.99955 * 179.97438 * 10 7 6 13 13 N 1.31514 * 119.99848 * 180.02562 * 12 10 7 14 14 Si 1.86801 * 120.00279 * 359.97438 * 12 10 7 15 15 H 1.48504 * 109.47343 * 270.00195 * 14 12 10 16 16 H 1.48503 * 109.46674 * 30.00164 * 14 12 10 17 17 H 1.48501 * 109.47041 * 150.00074 * 14 12 10 18 18 N 1.36110 * 125.80201 * 180.24915 * 3 2 1 19 19 C 1.46503 * 126.50493 * 0.03999 * 18 3 2 20 20 H 1.09004 * 109.47229 * 59.99906 * 1 2 3 21 21 H 1.08992 * 109.46979 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47129 * 300.00490 * 1 2 3 23 23 H 1.07994 * 125.82946 * 180.02562 * 5 4 3 24 24 H 1.00903 * 111.00472 * 296.44368 * 9 7 6 25 25 H 1.00907 * 110.99976 * 60.40023 * 9 7 6 26 26 H 0.97005 * 120.00289 * 180.02562 * 13 12 10 27 27 H 1.09008 * 109.46337 * 268.13499 * 19 18 3 28 28 H 1.09000 * 109.47246 * 28.12870 * 19 18 3 29 29 H 1.08999 * 109.47132 * 148.13521 * 19 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7353 0.0000 4 7 1.2009 2.6764 0.0005 5 6 1.8002 3.8789 0.0009 6 6 3.1305 3.6884 0.0001 7 6 4.1900 4.7600 -0.0004 8 1 5.1092 4.3624 0.4296 9 7 3.7302 5.9035 0.7990 10 6 4.4502 5.2086 -1.4154 11 1 3.9034 4.7620 -2.2326 12 6 5.3864 6.1891 -1.6666 13 7 5.6131 6.5809 -2.9014 14 14 6.3317 6.9621 -0.2530 15 1 5.5903 8.1468 0.2493 16 1 6.4818 5.9710 0.8426 17 1 7.6746 7.3831 -0.7271 18 7 3.3413 2.3278 -0.0048 19 6 4.6385 1.6469 -0.0117 20 1 -0.3634 0.5139 -0.8900 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 1.2986 4.8353 0.0017 24 1 2.9113 6.3263 0.3880 25 1 3.5549 5.6298 1.7543 26 1 6.2720 7.2705 -3.0782 27 1 4.9804 1.5063 1.0138 28 1 4.5369 0.6763 -0.4971 29 1 5.3634 2.2517 -0.5567 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260472286.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:34 Heat of formation + Delta-G solvation = 34.365082 kcal Electronic energy + Delta-G solvation = -13732.253060 eV Core-core repulsion = 11395.553469 eV Total energy + Delta-G solvation = -2336.699592 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.81630 -36.79943 -34.95229 -33.99714 -30.41028 -29.55386 -28.28569 -27.86067 -24.26756 -22.66030 -20.77841 -19.06527 -18.65642 -16.89997 -16.85903 -16.57363 -15.91864 -15.32876 -15.19311 -14.73848 -14.46800 -14.36760 -13.82946 -13.66112 -13.53626 -13.45391 -12.70804 -12.67642 -11.88918 -11.70542 -11.59396 -11.11377 -10.78821 -10.50765 -10.20238 -9.59290 -8.32954 -8.27299 -6.44596 0.26243 0.96496 1.21466 1.51725 1.58770 1.71945 1.98205 2.03962 2.49710 3.05994 3.81300 3.89778 4.10686 4.28231 4.30342 4.32631 4.36790 4.51402 4.61294 4.90347 4.95347 5.29131 5.47441 5.70033 6.00883 6.09440 6.36753 6.67728 6.83488 6.90773 7.32290 8.84829 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.049216 B = 0.007407 C = 0.007221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.788118 B = 3779.524441 C = 3876.829807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 S -0.017 6.017 3 C 0.155 3.845 4 N -0.508 5.508 5 C -0.052 4.052 6 C -0.003 4.003 7 C 0.267 3.733 8 H 0.049 0.951 9 N -0.830 5.830 10 C -0.518 4.518 11 H 0.022 0.978 12 C 0.032 3.968 13 N -0.944 5.944 14 Si 1.002 2.998 15 H -0.275 1.275 16 H -0.256 1.256 17 H -0.322 1.322 18 N -0.447 5.447 19 C 0.066 3.934 20 H 0.078 0.922 21 H 0.139 0.861 22 H 0.085 0.915 23 H 0.170 0.830 24 H 0.344 0.656 25 H 0.335 0.665 26 H 0.267 0.733 27 H 0.098 0.902 28 H 0.103 0.897 29 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 -12.589 9.589 16.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S 0.210 5.790 3 C -0.214 4.214 4 N -0.231 5.231 5 C -0.200 4.200 6 C -0.124 4.124 7 C 0.155 3.845 8 H 0.066 0.934 9 N -0.361 5.361 10 C -0.556 4.556 11 H 0.040 0.960 12 C -0.168 4.168 13 N -0.583 5.583 14 Si 0.831 3.169 15 H -0.200 1.200 16 H -0.181 1.181 17 H -0.252 1.252 18 N -0.133 5.133 19 C -0.075 4.075 20 H 0.097 0.903 21 H 0.157 0.843 22 H 0.104 0.896 23 H 0.187 0.813 24 H 0.158 0.842 25 H 0.149 0.851 26 H 0.076 0.924 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.532 -13.300 9.322 16.862 hybrid contribution -0.471 1.438 -0.041 1.513 sum -5.003 -11.863 9.280 15.871 Atomic orbital electron populations 1.23513 0.91393 1.07976 1.06499 1.84882 1.10406 0.89734 1.93980 1.25549 0.83241 1.01142 1.11440 1.70535 1.31578 0.98706 1.22319 1.21971 0.90830 0.96449 1.10797 1.23010 0.98570 0.84355 1.06437 1.17775 0.90047 0.83825 0.92883 0.93357 1.59198 1.41050 1.30155 1.05711 1.20813 1.22334 1.21893 0.90577 0.96013 1.25856 0.96933 0.95816 0.98162 1.70080 1.35171 1.30967 1.22072 0.84823 0.74283 0.79363 0.78402 1.20035 1.18067 1.25229 1.45490 1.07361 1.05702 1.54737 1.22277 0.81659 0.98596 1.04952 0.90259 0.84280 0.89620 0.81254 0.84169 0.85120 0.92404 0.88344 0.87861 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 10.01 113.37 1.13 -1.36 15 2 S -0.02 -0.42 22.24 -56.49 -1.26 -1.68 15 3 C 0.16 5.56 7.96 179.70 1.43 6.99 15 4 N -0.51 -20.06 10.60 -196.47 -2.08 -22.14 15 5 C -0.05 -2.13 11.22 83.42 0.94 -1.20 15 6 C 0.00 -0.14 5.91 40.76 0.24 0.10 15 7 C 0.27 11.85 2.30 43.42 0.10 11.95 15 8 H 0.05 2.15 6.77 -2.39 -0.02 2.13 15 9 N -0.83 -32.47 6.60 -174.95 -1.16 -33.62 15 10 C -0.52 -28.82 9.26 25.60 0.24 -28.58 15 11 H 0.02 1.39 7.98 -2.91 -0.02 1.37 15 12 C 0.03 1.83 5.47 84.65 0.46 2.30 15 13 N -0.94 -58.34 13.96 21.45 0.30 -58.04 15 14 Si 1.00 47.15 26.03 68.60 1.79 48.94 15 15 H -0.27 -12.72 7.11 99.48 0.71 -12.01 15 16 H -0.26 -11.18 6.54 99.48 0.65 -10.53 15 17 H -0.32 -15.34 7.11 99.48 0.71 -14.63 15 18 N -0.45 -16.61 3.20 -532.68 -1.71 -18.31 15 19 C 0.07 1.92 10.65 127.77 1.36 3.28 15 20 H 0.08 1.79 8.14 -2.39 -0.02 1.77 15 21 H 0.14 1.71 8.14 -2.40 -0.02 1.69 15 22 H 0.08 1.80 8.14 -2.40 -0.02 1.78 15 23 H 0.17 6.46 7.58 -2.91 -0.02 6.44 15 24 H 0.34 13.22 8.21 -89.69 -0.74 12.49 15 25 H 0.34 11.02 9.03 -89.69 -0.81 10.20 15 26 H 0.27 15.50 8.31 -92.70 -0.77 14.73 15 27 H 0.10 2.31 8.14 -2.38 -0.02 2.29 15 28 H 0.10 2.50 7.68 -2.39 -0.02 2.48 15 29 H 0.08 2.70 7.81 -2.39 -0.02 2.68 15 Total: -1.00 -69.85 262.11 1.36 -68.49 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: -0.43 Total: 22.89 kcal Atomic # 6 Polarization: -12.42 SS G_CDS: 5.90 Total: -6.52 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -4.65 Total: -132.11 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.79 Total: 48.94 kcal Atomic # 16 Polarization: -0.42 SS G_CDS: -1.26 Total: -1.68 kcal Total: -69.85 1.36 -68.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260472286.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.858 kcal (2) G-P(sol) polarization free energy of solvation -69.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds