Wall clock time and date at job start Mon Mar 30 2020 03:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99772 * 2 1 4 4 H 1.48498 * 109.46735 * 239.99760 * 3 2 1 5 5 H 1.48494 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46793 * 120.00033 * 3 2 1 7 7 C 1.37876 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46968 * 180.02562 * 9 7 2 11 11 C 1.47476 * 125.59862 * 269.99473 * 10 9 7 12 12 C 1.52818 * 103.17266 * 179.97438 * 11 10 9 13 13 C 1.53478 * 111.75624 * 237.62892 * 12 11 10 14 14 C 1.54397 * 103.96474 * 220.04821 * 13 12 11 15 15 O 1.43854 * 107.26695 * 357.20632 * 14 13 12 16 16 C 1.44648 * 107.18541 * 26.03626 * 15 14 13 17 17 O 1.44270 * 105.43441 * 0.02562 * 12 11 10 18 18 C 1.34235 * 125.59881 * 89.97236 * 10 9 7 19 19 O 1.21503 * 123.12085 * 0.04620 * 18 10 9 20 20 H 0.97005 * 119.99907 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47286 * 59.99589 * 9 7 2 22 22 H 1.09008 * 109.46825 * 299.99795 * 9 7 2 23 23 H 1.09002 * 110.67514 * 61.56570 * 11 10 9 24 24 H 1.08989 * 110.68270 * 298.40502 * 11 10 9 25 25 H 1.09002 * 110.55383 * 101.38778 * 13 12 11 26 26 H 1.09001 * 110.55442 * 338.70880 * 13 12 11 27 27 H 1.09002 * 109.88052 * 116.61535 * 14 13 12 28 28 H 1.09002 * 109.88283 * 237.78680 * 14 13 12 29 29 H 1.08995 * 110.63231 * 79.93984 * 16 15 14 30 30 H 1.09004 * 110.63275 * 202.81545 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.7617 -4.2657 -1.1967 12 6 3.6798 -5.3387 -0.6125 13 6 5.1260 -5.1771 -1.1003 14 6 5.5978 -6.6253 -1.3535 15 8 4.5220 -7.4986 -0.9670 16 6 3.2931 -6.7470 -1.0985 17 8 3.5644 -5.2047 0.8194 18 6 2.7104 -4.2057 1.0939 19 8 2.4227 -3.8702 2.2257 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6240 -2.5566 0.8904 23 1 3.3328 -3.5534 -1.7922 24 1 1.9698 -4.7194 -1.7923 25 1 5.7382 -4.7039 -0.3326 26 1 5.1561 -4.5979 -2.0232 27 1 5.8242 -6.7618 -2.4110 28 1 6.4820 -6.8376 -0.7525 29 1 2.9707 -6.7171 -2.1392 30 1 2.5128 -7.1734 -0.4680 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260625291.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:51 Heat of formation + Delta-G solvation = -110.755353 kcal Electronic energy + Delta-G solvation = -16154.044685 eV Core-core repulsion = 13336.006577 eV Total energy + Delta-G solvation = -2818.038108 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.46386 -38.78845 -36.26689 -34.99949 -32.76345 -31.83848 -29.62851 -27.80145 -25.26823 -23.37352 -22.94775 -21.60524 -19.96562 -17.03399 -16.80365 -16.40004 -16.18665 -15.63637 -15.51856 -14.80839 -14.33639 -14.12816 -13.48649 -13.26497 -13.01279 -12.57303 -12.11120 -11.81229 -11.68213 -11.53736 -11.24648 -10.99901 -10.71792 -10.42097 -10.26076 -9.86217 -9.76965 -9.71682 -8.56121 -7.99453 -6.17707 -4.24060 3.12884 3.25159 3.30242 3.32855 3.40267 3.70944 3.88848 4.19570 4.35180 4.44929 4.58655 4.87585 5.00479 5.16379 5.28032 5.44799 5.46550 5.54046 5.59616 5.66471 5.86283 5.96264 6.61175 7.03440 7.25200 7.34435 7.78266 8.04119 8.16244 8.71012 8.88373 9.42288 10.90257 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.043025 B = 0.007132 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.625062 B = 3925.297356 C = 4109.919106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.064 3.936 3 Si 0.902 3.098 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.539 4.539 8 H 0.059 0.941 9 C 0.273 3.727 10 N -0.609 5.609 11 C 0.084 3.916 12 C 0.058 3.942 13 C -0.157 4.157 14 C 0.050 3.950 15 O -0.372 6.372 16 C 0.053 3.947 17 O -0.319 6.319 18 C 0.630 3.370 19 O -0.523 6.523 20 H 0.267 0.733 21 H 0.042 0.958 22 H 0.048 0.952 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.095 0.905 26 H 0.099 0.901 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.689 -10.523 -7.685 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.139 4.139 3 Si 0.729 3.271 4 H -0.202 1.202 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.078 0.922 9 C 0.156 3.844 10 N -0.355 5.355 11 C -0.040 4.040 12 C 0.019 3.981 13 C -0.194 4.194 14 C -0.027 4.027 15 O -0.291 6.291 16 C -0.023 4.023 17 O -0.231 6.231 18 C 0.383 3.617 19 O -0.408 6.408 20 H 0.076 0.924 21 H 0.060 0.940 22 H 0.066 0.934 23 H 0.112 0.888 24 H 0.106 0.894 25 H 0.113 0.887 26 H 0.117 0.883 27 H 0.082 0.918 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.485 -10.555 -6.867 14.649 hybrid contribution 0.434 1.314 -0.202 1.399 sum 7.918 -9.241 -7.069 14.074 Atomic orbital electron populations 1.69911 1.06022 1.27526 1.49660 1.24932 0.94933 0.99342 0.94678 0.86492 0.79513 0.82316 0.78757 1.20151 1.20994 1.20020 1.21409 0.93569 0.90520 1.52227 0.92236 1.19243 0.85901 0.80297 0.98972 1.48768 1.47107 1.36257 1.03390 1.22519 0.96899 0.93917 0.90706 1.23605 0.97041 0.97433 0.80021 1.23144 0.94388 0.98587 1.03304 1.23242 0.91274 0.88099 1.00093 1.88953 1.15060 1.36296 1.88754 1.23734 0.88801 0.88479 1.01325 1.87230 1.61232 1.51593 1.23051 1.18762 0.78281 0.78416 0.86277 1.90993 1.62990 1.65861 1.20925 0.92366 0.94039 0.93421 0.88804 0.89415 0.88671 0.88276 0.91791 0.89446 0.89681 0.87662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.54 -14.89 9.39 -34.44 -0.32 -15.21 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.27 6.92 5.78 -5.19 -0.03 6.89 16 10 N -0.61 -13.09 2.96 -180.47 -0.53 -13.63 16 11 C 0.08 1.28 7.00 -3.60 -0.03 1.25 16 12 C 0.06 0.83 1.38 -89.99 -0.12 0.71 16 13 C -0.16 -1.76 6.37 -25.75 -0.16 -1.92 16 14 C 0.05 0.50 7.73 37.89 0.29 0.79 16 15 O -0.37 -4.82 11.53 -35.23 -0.41 -5.23 16 16 C 0.05 0.63 6.85 37.64 0.26 0.89 16 17 O -0.32 -6.19 10.62 -39.10 -0.42 -6.61 16 18 C 0.63 14.51 8.86 53.81 0.48 14.99 16 19 O -0.52 -14.29 17.56 -19.08 -0.33 -14.62 16 20 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 21 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 22 H 0.05 1.35 7.93 -51.92 -0.41 0.94 16 23 H 0.09 1.33 7.43 -51.93 -0.39 0.94 16 24 H 0.09 1.10 7.67 -51.94 -0.40 0.70 16 25 H 0.09 1.15 8.09 -51.93 -0.42 0.73 16 26 H 0.10 0.88 7.51 -51.93 -0.39 0.49 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.09 0.74 7.93 -51.93 -0.41 0.33 16 30 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 260.88 15.07 3.93 3.93 Total: -1.00 -33.38 260.88 -5.43 -38.81 By element: Atomic # 1 Polarization: -0.40 SS G_CDS: -3.65 Total: -4.05 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 0.26 Total: 10.07 kcal Atomic # 7 Polarization: -38.77 SS G_CDS: 0.20 Total: -38.57 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -1.16 Total: -26.46 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.38 -5.43 -38.81 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625291.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.942 kcal (2) G-P(sol) polarization free energy of solvation -33.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds