Wall clock time and date at job start Mon Mar 30 2020 03:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86809 * 119.99772 * 2 1 4 4 H 1.48498 * 109.46735 * 239.99760 * 3 2 1 5 5 H 1.48494 * 109.47008 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.46793 * 120.00033 * 3 2 1 7 7 C 1.37876 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99851 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99724 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46968 * 180.02562 * 9 7 2 11 11 C 1.47476 * 125.59862 * 269.99473 * 10 9 7 12 12 C 1.52818 * 103.17266 * 179.97438 * 11 10 9 13 13 C 1.53478 * 111.75624 * 237.62892 * 12 11 10 14 14 C 1.54397 * 103.96474 * 220.04821 * 13 12 11 15 15 O 1.43854 * 107.26695 * 357.20632 * 14 13 12 16 16 C 1.44648 * 107.18541 * 26.03626 * 15 14 13 17 17 O 1.44270 * 105.43441 * 0.02562 * 12 11 10 18 18 C 1.34235 * 125.59881 * 89.97236 * 10 9 7 19 19 O 1.21503 * 123.12085 * 0.04620 * 18 10 9 20 20 H 0.97005 * 119.99907 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47286 * 59.99589 * 9 7 2 22 22 H 1.09008 * 109.46825 * 299.99795 * 9 7 2 23 23 H 1.09002 * 110.67514 * 61.56570 * 11 10 9 24 24 H 1.08989 * 110.68270 * 298.40502 * 11 10 9 25 25 H 1.09002 * 110.55383 * 101.38778 * 13 12 11 26 26 H 1.09001 * 110.55442 * 338.70880 * 13 12 11 27 27 H 1.09002 * 109.88052 * 116.61535 * 14 13 12 28 28 H 1.09002 * 109.88283 * 237.78680 * 14 13 12 29 29 H 1.08995 * 110.63231 * 79.93984 * 16 15 14 30 30 H 1.09004 * 110.63275 * 202.81545 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 7 2.2030 -3.6126 0.0018 11 6 2.7617 -4.2657 -1.1967 12 6 3.6798 -5.3387 -0.6125 13 6 5.1260 -5.1771 -1.1003 14 6 5.5978 -6.6253 -1.3535 15 8 4.5220 -7.4986 -0.9670 16 6 3.2931 -6.7470 -1.0985 17 8 3.5644 -5.2047 0.8194 18 6 2.7104 -4.2057 1.0939 19 8 2.4227 -3.8702 2.2257 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5570 -0.8896 22 1 0.6240 -2.5566 0.8904 23 1 3.3328 -3.5534 -1.7922 24 1 1.9698 -4.7194 -1.7923 25 1 5.7382 -4.7039 -0.3326 26 1 5.1561 -4.5979 -2.0232 27 1 5.8242 -6.7618 -2.4110 28 1 6.4820 -6.8376 -0.7525 29 1 2.9707 -6.7171 -2.1392 30 1 2.5128 -7.1734 -0.4680 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260625291.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:51 Heat of formation + Delta-G solvation = -135.351327 kcal Electronic energy + Delta-G solvation = -16155.111247 eV Core-core repulsion = 13336.006577 eV Total energy + Delta-G solvation = -2819.104670 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.89792 -39.98267 -37.92684 -36.75567 -34.72889 -33.04939 -30.69908 -29.60034 -26.64643 -25.31628 -23.88925 -22.92137 -21.51566 -18.85230 -18.28984 -17.94636 -17.56516 -17.01557 -16.76677 -16.32690 -15.90769 -15.44630 -14.88306 -14.60671 -14.43894 -14.20492 -13.54088 -13.46710 -12.98518 -12.79044 -12.70050 -12.57586 -12.30991 -12.15298 -11.88300 -11.67723 -11.59650 -10.67904 -10.63396 -9.76672 -8.28346 -6.43685 1.37712 1.41965 1.48002 1.57930 1.68354 2.35122 2.50557 2.75852 3.02672 3.11739 3.38678 3.59133 3.95897 4.11788 4.20498 4.41378 4.46125 4.61172 4.63519 4.79945 4.87376 4.98433 5.03362 5.26031 5.43000 5.70401 5.77848 5.94305 6.48975 6.62087 7.02381 7.28835 8.79038 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.043025 B = 0.007132 C = 0.006811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.625062 B = 3925.297356 C = 4109.919106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.015 3.985 3 Si 0.968 3.032 4 H -0.257 1.257 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.557 4.557 8 H 0.055 0.945 9 C 0.286 3.714 10 N -0.612 5.612 11 C 0.081 3.919 12 C 0.046 3.954 13 C -0.154 4.154 14 C 0.049 3.951 15 O -0.395 6.395 16 C 0.058 3.942 17 O -0.327 6.327 18 C 0.627 3.373 19 O -0.582 6.582 20 H 0.271 0.729 21 H 0.049 0.951 22 H 0.005 0.995 23 H 0.111 0.889 24 H 0.122 0.878 25 H 0.081 0.919 26 H 0.130 0.870 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.127 0.873 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.045 -10.645 -10.121 17.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.202 1.202 6 H -0.206 1.206 7 C -0.595 4.595 8 H 0.073 0.927 9 C 0.168 3.832 10 N -0.358 5.358 11 C -0.041 4.041 12 C 0.008 3.992 13 C -0.191 4.191 14 C -0.027 4.027 15 O -0.314 6.314 16 C -0.019 4.019 17 O -0.238 6.238 18 C 0.381 3.619 19 O -0.472 6.472 20 H 0.080 0.920 21 H 0.066 0.934 22 H 0.023 0.977 23 H 0.129 0.871 24 H 0.140 0.860 25 H 0.099 0.901 26 H 0.148 0.852 27 H 0.115 0.885 28 H 0.109 0.891 29 H 0.144 0.856 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.873 -10.721 -9.365 16.774 hybrid contribution 0.037 1.268 0.509 1.367 sum 8.910 -9.452 -8.856 15.721 Atomic orbital electron populations 1.70013 1.07451 1.28640 1.50099 1.25800 0.95804 1.02897 0.94006 0.85461 0.78352 0.77963 0.79025 1.18174 1.20154 1.20627 1.21671 0.93516 0.91750 1.52603 0.92663 1.18791 0.86163 0.81140 0.97154 1.48630 1.46282 1.35365 1.05498 1.22968 0.98156 0.94216 0.88735 1.24181 0.99115 0.98876 0.77030 1.23248 0.91839 0.99985 1.04060 1.23431 0.90502 0.86604 1.02163 1.88935 1.15965 1.37193 1.89319 1.23871 0.88423 0.86288 1.03299 1.87210 1.59857 1.49913 1.26851 1.18900 0.78369 0.78817 0.85797 1.90925 1.65119 1.67879 1.23246 0.92032 0.93353 0.97685 0.87107 0.86012 0.90055 0.85160 0.88509 0.89078 0.85562 0.88470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.40 13.29 21.45 0.28 -53.12 16 2 C 0.02 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.97 43.17 29.54 68.60 2.03 45.20 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.56 -30.98 9.39 25.60 0.24 -30.74 16 8 H 0.06 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.29 14.82 5.78 85.63 0.49 15.32 16 10 N -0.61 -26.35 2.96 -956.10 -2.83 -29.18 16 11 C 0.08 2.27 7.00 86.13 0.60 2.87 16 12 C 0.05 1.20 1.38 -10.38 -0.01 1.19 16 13 C -0.15 -2.98 6.37 31.23 0.20 -2.78 16 14 C 0.05 0.82 7.73 72.46 0.56 1.38 16 15 O -0.39 -9.12 11.53 -148.98 -1.72 -10.84 16 16 C 0.06 1.18 6.85 72.29 0.50 1.68 16 17 O -0.33 -12.69 10.62 -52.02 -0.55 -13.24 16 18 C 0.63 29.64 8.86 129.88 1.15 30.79 16 19 O -0.58 -33.43 17.56 19.64 0.34 -33.08 16 20 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 21 H 0.05 2.41 8.14 -2.39 -0.02 2.40 16 22 H 0.01 0.30 7.93 -2.38 -0.02 0.28 16 23 H 0.11 2.75 7.43 -2.39 -0.02 2.73 16 24 H 0.12 2.58 7.67 -2.39 -0.02 2.56 16 25 H 0.08 1.83 8.09 -2.39 -0.02 1.81 16 26 H 0.13 1.71 7.51 -2.39 -0.02 1.70 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.13 1.58 7.93 -2.39 -0.02 1.56 16 30 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 Total: -1.00 -74.75 260.88 2.88 -71.87 By element: Atomic # 1 Polarization: 0.26 SS G_CDS: 1.14 Total: 1.40 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 4.19 Total: 21.00 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -2.55 Total: -82.30 kcal Atomic # 8 Polarization: -55.24 SS G_CDS: -1.93 Total: -57.16 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -74.75 2.88 -71.87 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260625291.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.485 kcal (2) G-P(sol) polarization free energy of solvation -74.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds