Wall clock time and date at job start Mon Mar 30 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34968 * 126.28812 * 2 1 4 4 Cl 1.73599 * 125.90312 * 0.02562 * 3 2 1 5 5 N 1.36352 * 108.19723 * 179.74848 * 3 2 1 6 6 C 1.46506 * 125.64065 * 180.19057 * 5 3 2 7 7 C 1.36483 * 108.71970 * 0.23000 * 5 3 2 8 8 C 1.50696 * 125.88759 * 180.02562 * 7 5 3 9 9 C 1.34817 * 108.22467 * 359.97438 * 7 5 3 10 10 C 1.50701 * 126.28190 * 180.02562 * 9 7 5 11 11 C 1.50698 * 109.47681 * 89.99613 * 10 9 7 12 12 H 1.08003 * 119.99598 * 0.02562 * 11 10 9 13 13 C 1.37878 * 120.00405 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99934 * 180.02562 * 13 11 10 15 15 Si 1.86801 * 119.99851 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47356 * 89.99558 * 15 13 11 17 17 H 1.48500 * 109.46870 * 209.99789 * 15 13 11 18 18 H 1.48505 * 109.47063 * 329.99589 * 15 13 11 19 19 H 1.09008 * 109.46902 * 90.02387 * 1 2 3 20 20 H 1.08994 * 109.47457 * 210.02745 * 1 2 3 21 21 H 1.08997 * 109.47111 * 330.03063 * 1 2 3 22 22 H 1.09005 * 109.46799 * 90.02238 * 6 5 3 23 23 H 1.08997 * 109.47299 * 210.02900 * 6 5 3 24 24 H 1.09007 * 109.47048 * 330.02800 * 6 5 3 25 25 H 1.08996 * 109.47486 * 89.97066 * 8 7 5 26 26 H 1.09005 * 109.47285 * 209.97032 * 8 7 5 27 27 H 1.09004 * 109.47115 * 329.97271 * 8 7 5 28 28 H 1.09007 * 109.46905 * 209.99982 * 10 9 7 29 29 H 1.09001 * 109.46972 * 329.99385 * 10 9 7 30 30 H 0.96995 * 119.99670 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3058 1.0879 0.0000 4 17 1.7749 2.7407 0.0006 5 7 3.6019 0.6645 0.0057 6 6 4.7831 1.5312 0.0116 7 6 3.6169 -0.7002 0.0041 8 6 4.8474 -1.5702 0.0095 9 6 2.3411 -1.1359 -0.0020 10 6 1.8897 -2.5737 -0.0051 11 6 1.7330 -3.0543 1.4146 12 1 1.9392 -2.3852 2.2369 13 6 1.3254 -4.3477 1.6636 14 7 1.1881 -4.7668 2.9026 15 14 0.9681 -5.5046 0.2412 16 1 2.2090 -6.2309 -0.1299 17 1 -0.0744 -6.4811 0.6473 18 1 0.4855 -4.7215 -0.9247 19 1 -0.3633 -0.0004 -1.0278 20 1 -0.3634 -0.8897 0.5142 21 1 -0.3633 0.8902 0.5133 22 1 5.0716 1.7452 1.0408 23 1 5.6047 1.0291 -0.4992 24 1 4.5517 2.4642 -0.5024 25 1 5.1391 -1.7808 1.0383 26 1 4.6329 -2.5063 -0.5062 27 1 5.6604 -1.0527 -0.4999 28 1 0.9341 -2.6534 -0.5233 29 1 2.6323 -3.1865 -0.5162 30 1 0.9017 -5.6768 3.0778 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260676510.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:41 Heat of formation + Delta-G solvation = 26.839383 kcal Electronic energy + Delta-G solvation = -13734.891264 eV Core-core repulsion = 11363.528876 eV Total energy + Delta-G solvation = -2371.362388 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.82379 -36.29966 -34.08077 -32.57831 -31.42803 -29.02565 -28.41946 -25.07374 -24.18469 -22.01186 -18.74733 -18.29780 -16.66942 -16.20344 -15.26394 -14.21046 -14.06388 -13.41575 -12.97922 -12.67678 -12.61686 -12.36164 -12.14165 -11.98462 -11.85861 -11.50439 -11.35812 -10.99095 -10.89480 -10.74393 -10.20817 -10.06795 -9.93181 -9.23669 -8.47054 -7.60220 -7.13928 -5.96278 -3.92737 2.18749 2.55626 3.34721 3.42465 3.46173 3.47121 3.59483 4.50984 4.91925 5.24821 5.35575 5.43812 5.46328 5.64033 5.91294 6.03585 6.11703 6.29724 6.36713 6.45719 6.62396 6.81904 6.97830 7.17198 7.28947 7.57056 7.77336 7.83702 7.88945 8.66437 9.12073 9.65703 11.17226 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.034450 B = 0.008346 C = 0.007395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.579444 B = 3354.252353 C = 3785.566989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.124 4.124 3 C 0.038 3.962 4 Cl -0.047 7.047 5 N -0.451 5.451 6 C 0.075 3.925 7 C 0.015 3.985 8 C -0.071 4.071 9 C -0.098 4.098 10 C 0.049 3.951 11 C -0.500 4.500 12 H 0.071 0.929 13 C 0.066 3.934 14 N -0.905 5.905 15 Si 0.874 3.126 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.264 1.264 19 H 0.055 0.945 20 H 0.078 0.922 21 H 0.053 0.947 22 H 0.068 0.932 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.049 0.951 28 H 0.025 0.975 29 H 0.018 0.982 30 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.245 11.508 -7.593 14.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 C -0.097 4.097 4 Cl -0.019 7.019 5 N -0.132 5.132 6 C -0.067 4.067 7 C -0.094 4.094 8 C -0.129 4.129 9 C -0.104 4.104 10 C 0.012 3.988 11 C -0.539 4.539 12 H 0.089 0.911 13 C -0.134 4.134 14 N -0.545 5.545 15 Si 0.701 3.299 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.188 1.188 19 H 0.074 0.926 20 H 0.097 0.903 21 H 0.072 0.928 22 H 0.087 0.913 23 H 0.100 0.900 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.457 11.729 -7.484 14.945 hybrid contribution -0.125 -0.313 -0.497 0.601 sum 5.332 11.415 -7.981 14.914 Atomic orbital electron populations 1.20143 0.89999 1.02557 1.00951 1.19195 0.95652 0.90085 1.08411 1.20334 0.84669 0.84883 1.19830 1.98298 1.88521 1.17250 1.97812 1.43555 1.04075 1.05818 1.59797 1.21880 0.87243 0.94668 1.02876 1.20081 0.97110 0.80430 1.11784 1.20197 0.92038 0.97988 1.02648 1.19525 0.90235 0.96215 1.04440 1.18158 0.95824 0.86908 0.97944 1.21005 1.44685 0.97237 0.90935 0.91054 1.24997 0.95214 0.97950 0.95286 1.69911 1.48259 1.17545 1.18737 0.86865 0.78346 0.81064 0.83605 1.20373 1.21462 1.18849 0.92636 0.90349 0.92787 0.91336 0.89965 0.90480 0.91016 0.89918 0.93171 0.95688 0.96381 0.92864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 9.95 36.01 0.36 -1.10 16 2 C -0.12 -2.55 6.14 -104.77 -0.64 -3.19 16 3 C 0.04 0.68 7.40 -16.70 -0.12 0.56 16 4 Cl -0.05 -0.70 28.29 -51.86 -1.47 -2.17 16 5 N -0.45 -7.74 3.15 -116.38 -0.37 -8.10 16 6 C 0.08 0.91 10.76 59.85 0.64 1.55 16 7 C 0.01 0.28 6.89 -81.74 -0.56 -0.28 16 8 C -0.07 -1.15 9.89 36.00 0.36 -0.80 16 9 C -0.10 -2.17 5.33 -104.82 -0.56 -2.73 16 10 C 0.05 1.20 4.06 -29.04 -0.12 1.09 16 11 C -0.50 -14.28 9.65 -34.44 -0.33 -14.61 16 12 H 0.07 2.26 7.98 -52.48 -0.42 1.84 16 13 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 14 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 15 Si 0.87 21.51 27.47 -169.99 -4.67 16.84 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.26 -6.24 6.54 56.52 0.37 -5.87 16 19 H 0.05 0.92 8.14 -51.92 -0.42 0.49 16 20 H 0.08 1.58 8.04 -51.93 -0.42 1.16 16 21 H 0.05 0.90 7.90 -51.93 -0.41 0.49 16 22 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 23 H 0.08 0.82 7.03 -51.93 -0.36 0.46 16 24 H 0.08 0.82 7.78 -51.92 -0.40 0.41 16 25 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 26 H 0.08 1.37 7.13 -51.93 -0.37 1.00 16 27 H 0.05 0.64 7.06 -51.93 -0.37 0.27 16 28 H 0.02 0.61 7.10 -51.93 -0.37 0.24 16 29 H 0.02 0.43 6.56 -51.93 -0.34 0.09 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 268.48 15.07 4.05 4.05 Total: -1.00 -31.62 268.48 -6.66 -38.28 By element: Atomic # 1 Polarization: -0.16 SS G_CDS: -3.90 Total: -4.05 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -1.08 Total: -17.69 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.41 Total: -35.25 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.47 Total: -2.17 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.62 -6.66 -38.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260676510.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.117 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds