Wall clock time and date at job start Mon Mar 30 2020 02:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 240.00440 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 11 11 F 1.39889 * 109.47515 * 59.99623 * 9 7 2 12 12 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 13 13 N 1.46496 * 109.47428 * 179.97438 * 12 9 7 14 14 C 1.39817 * 120.00295 * 179.97438 * 13 12 9 15 15 C 1.38876 * 120.05122 * 359.72512 * 14 13 12 16 16 C 1.38115 * 119.95149 * 179.76665 * 15 14 13 17 17 C 1.38467 * 120.05212 * 0.48344 * 16 15 14 18 18 F 1.35091 * 119.95290 * 179.74355 * 17 16 15 19 19 C 1.38464 * 120.09320 * 359.77145 * 17 16 15 20 20 C 1.38113 * 120.05354 * 359.97438 * 19 17 16 21 21 H 0.97000 * 119.99706 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46733 * 299.99896 * 12 9 7 23 23 H 1.09004 * 109.47253 * 59.99496 * 12 9 7 24 24 H 0.97008 * 119.99402 * 359.97438 * 13 12 9 25 25 H 1.08007 * 120.02283 * 359.97438 * 15 14 13 26 26 H 1.08003 * 119.97485 * 180.22974 * 16 15 14 27 27 H 1.08000 * 119.97518 * 179.97438 * 19 17 16 28 28 H 1.08005 * 120.02943 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 1 0.6241 -2.5574 0.8881 11 9 0.4471 -2.5725 -1.1442 12 6 2.2453 -3.6621 -0.0015 13 7 1.5128 -4.9308 -0.0020 14 6 2.2119 -6.1417 -0.0024 15 6 3.6006 -6.1429 -0.0081 16 6 4.2891 -7.3402 -0.0036 17 6 3.5958 -8.5388 -0.0036 18 9 4.2713 -9.7087 -0.0045 19 6 2.2112 -8.5399 -0.0033 20 6 1.5185 -7.3451 -0.0024 21 1 -0.4850 -0.8401 -0.0004 22 1 2.8726 -3.6039 -0.8910 23 1 2.8713 -3.6047 0.8890 24 1 0.5427 -4.9308 -0.0020 25 1 4.1419 -5.2083 -0.0126 26 1 5.3692 -7.3416 -0.0043 27 1 1.6724 -9.4759 -0.0036 28 1 0.4385 -7.3464 -0.0026 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260741305.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:55 Heat of formation + Delta-G solvation = -86.733247 kcal Electronic energy + Delta-G solvation = -14802.640068 eV Core-core repulsion = 11874.556121 eV Total energy + Delta-G solvation = -2928.083947 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.59014 -46.15790 -39.12665 -35.32851 -33.15994 -31.06439 -30.07655 -27.41155 -24.50147 -23.04963 -21.72968 -20.90854 -17.85895 -17.33451 -16.75225 -16.14335 -15.38746 -15.21337 -14.81102 -14.30921 -13.88745 -13.50187 -13.47866 -13.20939 -13.15672 -12.62702 -12.39213 -11.85245 -11.72152 -10.91794 -10.83353 -10.80463 -10.20794 -9.80684 -9.64418 -9.02274 -8.71613 -8.64837 -7.14708 -6.63533 -4.48161 1.35660 1.53147 3.32694 3.34848 3.53626 3.69776 3.82382 4.36298 4.54836 4.84630 4.95886 5.13347 5.34934 5.45520 5.58384 5.82471 5.89152 5.92975 6.00833 6.30556 6.35348 6.37869 6.53948 6.93261 7.23776 7.42576 7.62688 7.96647 8.10503 8.53661 9.33662 10.76047 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.062595 B = 0.005096 C = 0.004777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.210824 B = 5493.088968 C = 5860.581331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.033 3.967 3 Si 1.075 2.925 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.645 4.645 8 H 0.064 0.936 9 C 0.192 3.808 10 H 0.035 0.965 11 F -0.240 7.240 12 C 0.107 3.893 13 N -0.737 5.737 14 C 0.220 3.780 15 C -0.176 4.176 16 C -0.100 4.100 17 C 0.017 3.983 18 F -0.153 7.153 19 C -0.102 4.102 20 C -0.179 4.179 21 H 0.275 0.725 22 H 0.063 0.937 23 H 0.068 0.932 24 H 0.400 0.600 25 H 0.132 0.868 26 H 0.130 0.870 27 H 0.129 0.871 28 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.861 -12.156 1.041 13.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.175 4.175 3 Si 0.902 3.098 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.683 4.683 8 H 0.082 0.918 9 C 0.156 3.844 10 H 0.053 0.947 11 F -0.222 7.222 12 C -0.016 4.016 13 N -0.363 5.363 14 C 0.113 3.887 15 C -0.199 4.199 16 C -0.119 4.119 17 C -0.005 4.005 18 F -0.132 7.132 19 C -0.121 4.121 20 C -0.202 4.202 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.086 0.914 24 H 0.235 0.765 25 H 0.150 0.850 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.759 -10.345 1.014 11.432 hybrid contribution -0.088 -1.919 -0.075 1.923 sum 4.671 -12.265 0.939 13.158 Atomic orbital electron populations 1.70738 1.06975 1.31522 1.43039 1.26007 0.96367 1.03144 0.91977 0.83458 0.74908 0.74604 0.76841 1.20470 1.21032 1.21027 1.22142 0.95040 0.90882 1.60214 0.91811 1.19436 0.88051 0.94221 0.82678 0.94713 1.92739 1.76435 1.97448 1.55565 1.22118 0.96146 0.81967 1.01419 1.45058 1.08582 1.02866 1.79840 1.17999 0.91628 0.86423 0.92621 1.20565 0.92281 0.98229 1.08813 1.20848 1.00185 0.90827 1.00066 1.17381 0.90083 0.81110 1.11877 1.91424 1.80436 1.46363 1.94959 1.20780 0.92198 0.98673 1.00451 1.20435 0.99760 0.90307 1.09707 0.91392 0.91864 0.91366 0.76492 0.85021 0.85211 0.85289 0.85458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.56 55.43 0.75 -25.55 15 2 C 0.03 0.92 5.42 -17.82 -0.10 0.83 15 3 Si 1.08 24.00 29.90 -169.99 -5.08 18.92 15 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 15 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.28 -6.08 7.11 56.52 0.40 -5.68 15 7 C -0.64 -17.30 8.86 -34.44 -0.30 -17.61 15 8 H 0.06 1.64 7.74 -52.49 -0.41 1.24 15 9 C 0.19 4.63 2.80 -27.88 -0.08 4.55 15 10 H 0.04 0.86 8.01 -51.93 -0.42 0.45 15 11 F -0.24 -6.22 15.83 2.25 0.04 -6.19 15 12 C 0.11 2.08 4.61 -4.04 -0.02 2.06 15 13 N -0.74 -12.41 5.67 -58.61 -0.33 -12.74 15 14 C 0.22 3.37 6.65 -83.74 -0.56 2.81 15 15 C -0.18 -2.57 9.31 -39.39 -0.37 -2.94 15 16 C -0.10 -1.34 10.02 -39.54 -0.40 -1.73 15 17 C 0.02 0.23 7.30 -39.41 -0.29 -0.06 15 18 F -0.15 -2.14 17.26 2.25 0.04 -2.10 15 19 C -0.10 -1.30 10.02 -39.54 -0.40 -1.70 15 20 C -0.18 -2.41 9.89 -39.39 -0.39 -2.80 15 21 H 0.28 8.15 6.59 -40.82 -0.27 7.89 15 22 H 0.06 1.25 7.94 -51.93 -0.41 0.84 15 23 H 0.07 1.26 7.96 -51.93 -0.41 0.85 15 24 H 0.40 6.49 8.43 -40.82 -0.34 6.15 15 25 H 0.13 1.87 6.73 -52.48 -0.35 1.52 15 26 H 0.13 1.46 8.06 -52.48 -0.42 1.04 15 27 H 0.13 1.35 8.06 -52.49 -0.42 0.92 15 28 H 0.13 1.48 8.06 -52.48 -0.42 1.05 15 LS Contribution 256.02 15.07 3.86 3.86 Total: -1.00 -29.26 256.02 -6.30 -35.56 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -2.68 Total: 4.82 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -2.89 Total: -16.58 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.42 Total: -38.29 kcal Atomic # 9 Polarization: -8.36 SS G_CDS: 0.07 Total: -8.29 kcal Atomic # 14 Polarization: 24.00 SS G_CDS: -5.08 Total: 18.92 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -29.26 -6.30 -35.56 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260741305.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.174 kcal (2) G-P(sol) polarization free energy of solvation -29.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds