Wall clock time and date at job start Mon Mar 30 2020 03:22:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31470 * 1 3 3 Si 1.86795 * 119.99580 * 2 1 4 4 H 1.48497 * 109.47340 * 269.99934 * 3 2 1 5 5 H 1.48506 * 109.47305 * 29.99950 * 3 2 1 6 6 H 1.48503 * 109.46971 * 149.99907 * 3 2 1 7 7 C 1.38879 * 120.00081 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99897 * 192.84493 * 7 2 1 9 9 N 1.37193 * 120.00034 * 12.85402 * 7 2 1 10 10 C 1.46015 * 118.34658 * 23.06105 * 9 7 2 11 11 C 1.53232 * 109.97147 * 159.83653 * 10 9 7 12 12 C 1.52697 * 108.48957 * 46.93068 * 11 10 9 13 13 C 1.53840 * 110.36547 * 62.46831 * 12 11 10 14 14 C 1.54639 * 103.83013 * 118.60626 * 13 12 11 15 15 O 1.44487 * 104.82231 * 23.88593 * 14 13 12 16 16 C 1.44585 * 105.39633 * 319.93108 * 15 14 13 17 17 O 1.44571 * 109.88618 * 300.17258 * 12 11 10 18 18 C 1.33710 * 118.33993 * 203.08612 * 9 7 2 19 19 O 1.21508 * 118.53677 * 2.99472 * 18 9 7 20 20 H 0.96996 * 120.00089 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.38502 * 39.68184 * 10 9 7 22 22 H 1.09001 * 109.38809 * 279.99506 * 10 9 7 23 23 H 1.08996 * 109.63632 * 287.23342 * 11 10 9 24 24 H 1.08994 * 109.63313 * 166.62787 * 11 10 9 25 25 H 1.09000 * 110.55907 * 237.18858 * 13 12 11 26 26 H 1.09003 * 110.55864 * 359.87104 * 13 12 11 27 27 H 1.09002 * 110.37366 * 142.72616 * 14 13 12 28 28 H 1.09005 * 110.37014 * 265.05722 * 14 13 12 29 29 H 1.08997 * 110.39552 * 281.04012 * 16 15 14 30 30 H 1.09000 * 110.39637 * 158.63501 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2486 1.6178 0.0000 4 1 2.4961 2.0465 -1.4000 5 1 1.4459 2.6527 0.7000 6 1 3.5461 1.4403 0.7001 7 6 2.0091 -1.2027 0.0005 8 1 3.0688 -1.2143 0.2085 9 7 1.3490 -2.3761 -0.2633 10 6 0.1012 -2.3147 -1.0191 11 6 -0.2076 -3.6850 -1.6315 12 6 -0.0185 -4.7506 -0.5543 13 6 -1.0097 -4.5262 0.6006 14 6 -1.8623 -5.8162 0.6119 15 8 -1.0266 -6.8171 -0.0105 16 6 -0.3712 -6.1414 -1.1080 17 8 1.3434 -4.7238 -0.0698 18 6 1.8805 -3.5181 0.1853 19 8 2.8939 -3.4637 0.8533 20 1 -0.4850 0.8400 -0.0004 21 1 0.1962 -1.5759 -1.8148 22 1 -0.7114 -2.0245 -0.3531 23 1 0.4732 -3.8775 -2.4606 24 1 -1.2376 -3.7032 -1.9878 25 1 -0.4775 -4.4110 1.5449 26 1 -1.6337 -3.6540 0.4055 27 1 -2.1009 -6.1045 1.6357 28 1 -2.7757 -5.6724 0.0348 29 1 -1.0482 -6.0517 -1.9575 30 1 0.5338 -6.6759 -1.3971 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260762375.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:39 Heat of formation + Delta-G solvation = -130.955161 kcal Electronic energy + Delta-G solvation = -16760.440801 eV Core-core repulsion = 13941.526764 eV Total energy + Delta-G solvation = -2818.914038 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.21343 -40.01636 -37.57779 -37.30609 -34.16966 -33.12138 -30.99291 -29.47278 -26.85696 -24.79430 -23.94484 -23.35515 -20.45834 -19.13592 -18.66050 -17.45743 -17.23967 -17.09319 -16.61993 -16.30787 -15.94357 -15.58598 -15.07617 -14.46765 -14.08098 -13.64936 -13.43823 -13.39205 -12.92113 -12.74644 -12.37545 -12.34975 -12.18462 -12.08729 -11.97248 -11.42945 -11.12813 -10.93502 -10.69286 -9.85963 -8.35963 -6.09234 1.37918 1.41461 1.53047 1.83039 2.11497 2.35587 2.86807 2.97720 3.02127 3.41509 3.60723 3.72042 4.00413 4.11921 4.24827 4.42101 4.51250 4.57898 4.71604 4.75957 4.81449 4.97095 4.98801 5.38701 5.41117 5.49808 5.72695 6.20489 6.56335 7.01490 7.45352 7.80576 8.63683 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.046734 B = 0.008904 C = 0.008209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.986572 B = 3143.792690 C = 3409.967006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.004 3.996 3 Si 0.995 3.005 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.279 1.279 7 C -0.346 4.346 8 H 0.072 0.928 9 N -0.456 5.456 10 C 0.136 3.864 11 C -0.154 4.154 12 C 0.069 3.931 13 C -0.174 4.174 14 C 0.055 3.945 15 O -0.392 6.392 16 C 0.066 3.934 17 O -0.358 6.358 18 C 0.586 3.414 19 O -0.626 6.626 20 H 0.277 0.723 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.139 0.861 25 H 0.049 0.951 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.422 -5.446 -5.844 12.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.198 4.198 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.195 1.195 6 H -0.204 1.204 7 C -0.474 4.474 8 H 0.090 0.910 9 N -0.188 5.188 10 C 0.014 3.986 11 C -0.192 4.192 12 C 0.032 3.968 13 C -0.212 4.212 14 C -0.021 4.021 15 O -0.311 6.311 16 C -0.010 4.010 17 O -0.271 6.271 18 C 0.341 3.659 19 O -0.521 6.521 20 H 0.087 0.913 21 H 0.084 0.916 22 H 0.098 0.902 23 H 0.101 0.899 24 H 0.157 0.843 25 H 0.068 0.932 26 H 0.122 0.878 27 H 0.121 0.879 28 H 0.118 0.882 29 H 0.143 0.857 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -9.059 -5.785 -5.468 12.059 hybrid contribution 0.702 1.242 0.330 1.464 sum -8.357 -4.543 -5.138 10.811 Atomic orbital electron populations 1.70032 1.06425 1.28799 1.47874 1.26079 0.96613 1.02083 0.95031 0.84904 0.77760 0.76484 0.79009 1.18701 1.19497 1.20407 1.19606 0.93687 0.83476 1.50583 0.90986 1.43135 1.23381 1.04050 1.48191 1.21516 0.86103 0.95429 0.95576 1.22621 1.06325 0.93042 0.97207 1.23569 0.78822 0.99493 0.94932 1.23465 0.98411 1.01595 0.97716 1.23584 0.93353 0.84863 1.00293 1.89147 1.61393 1.34244 1.46312 1.23524 0.99012 0.88052 0.90414 1.86505 1.30909 1.28534 1.81104 1.17969 0.85547 0.80166 0.82215 1.90729 1.29284 1.85752 1.46319 0.91345 0.91600 0.90152 0.89858 0.84313 0.93206 0.87812 0.87931 0.88163 0.85677 0.88105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.15 10.47 21.65 0.23 -44.92 16 2 C 0.00 0.21 5.08 84.90 0.43 0.64 16 3 Si 1.00 41.72 29.57 68.60 2.03 43.75 16 4 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 5 H -0.27 -10.71 7.11 99.48 0.71 -10.01 16 6 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 7 C -0.35 -19.96 9.08 84.01 0.76 -19.20 16 8 H 0.07 4.49 7.27 -2.91 -0.02 4.46 16 9 N -0.46 -24.34 2.98 -767.92 -2.29 -26.63 16 10 C 0.14 5.77 4.33 86.55 0.38 6.14 16 11 C -0.15 -4.70 4.85 30.57 0.15 -4.55 16 12 C 0.07 2.33 1.07 -10.34 -0.01 2.32 16 13 C -0.17 -5.49 5.89 31.44 0.19 -5.31 16 14 C 0.06 1.30 7.65 72.54 0.55 1.86 16 15 O -0.39 -11.14 11.66 -148.98 -1.74 -12.88 16 16 C 0.07 1.70 6.95 72.25 0.50 2.20 16 17 O -0.36 -16.86 9.85 -53.34 -0.53 -17.38 16 18 C 0.59 32.77 8.07 129.96 1.05 33.82 16 19 O -0.63 -40.56 16.57 19.92 0.33 -40.23 16 20 H 0.28 12.96 8.31 -92.71 -0.77 12.19 16 21 H 0.07 2.90 7.51 -2.39 -0.02 2.88 16 22 H 0.08 3.56 5.77 -2.39 -0.01 3.54 16 23 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.14 2.88 8.14 -2.39 -0.02 2.86 16 25 H 0.05 1.93 7.97 -2.39 -0.02 1.91 16 26 H 0.10 3.04 6.60 -2.39 -0.02 3.03 16 27 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 28 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.13 2.11 7.85 -2.39 -0.02 2.09 16 30 H 0.10 2.65 8.08 -2.39 -0.02 2.63 16 Total: -1.00 -72.77 247.30 3.18 -69.59 By element: Atomic # 1 Polarization: 9.63 SS G_CDS: 1.15 Total: 10.78 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 4.00 Total: 17.93 kcal Atomic # 7 Polarization: -69.49 SS G_CDS: -2.06 Total: -71.55 kcal Atomic # 8 Polarization: -68.56 SS G_CDS: -1.93 Total: -70.49 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -72.77 3.18 -69.59 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260762375.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.364 kcal (2) G-P(sol) polarization free energy of solvation -72.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds