Wall clock time and date at job start Mon Mar 30 2020 03:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99987 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46866 * 90.00390 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00175 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00312 * 8 6 4 12 12 N 1.46506 * 109.46940 * 119.99690 * 2 1 3 13 13 C 1.46755 * 119.94180 * 239.72065 * 12 2 1 14 14 C 1.53823 * 108.46538 * 110.21172 * 13 12 2 15 15 C 1.50547 * 109.25725 * 81.67118 * 14 13 12 16 16 O 1.20826 * 119.50400 * 119.28123 * 15 14 13 17 17 O 1.34327 * 120.99182 * 299.29715 * 15 14 13 18 18 C 1.45394 * 116.67707 * 61.20835 * 17 15 14 19 19 C 1.34331 * 119.93813 * 60.00375 * 12 2 1 20 20 O 1.21283 * 120.01151 * 357.78070 * 19 12 2 21 21 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 23 23 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 24 24 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 25 25 H 1.08991 * 109.59573 * 229.96261 * 13 12 2 26 26 H 1.09006 * 109.59084 * 350.40684 * 13 12 2 27 27 H 1.09000 * 109.59316 * 321.69668 * 14 13 12 28 28 H 1.08997 * 109.48529 * 201.57675 * 14 13 12 29 29 H 1.09004 * 109.54561 * 160.47821 * 18 17 15 30 30 H 1.09001 * 109.53955 * 40.22814 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1963 13 6 2.8670 0.0221 2.1583 14 6 2.0599 0.2444 3.4488 15 6 2.1014 -1.0086 4.2824 16 8 2.5831 -0.9708 5.3898 17 8 1.6112 -2.1679 3.8134 18 6 2.2364 -2.7038 2.6151 19 6 1.6930 -1.9767 1.4076 20 8 0.9630 -2.5535 0.6297 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 0.7095 1.1617 -3.4844 25 1 3.7525 -0.5746 2.3768 26 1 3.1655 0.9835 1.7403 27 1 1.0258 0.4798 3.1972 28 1 2.4946 1.0703 4.0118 29 1 2.0125 -3.7673 2.5313 30 1 3.3155 -2.5607 2.6717 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261048272.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:30 Heat of formation + Delta-G solvation = -102.982869 kcal Electronic energy + Delta-G solvation = -16481.518238 eV Core-core repulsion = 13663.817170 eV Total energy + Delta-G solvation = -2817.701068 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.78056 -38.88212 -36.74536 -35.59777 -33.44975 -31.06821 -29.63910 -27.42460 -25.19287 -24.69675 -21.77679 -20.98810 -18.73712 -17.65222 -16.98649 -16.80925 -16.26764 -15.21722 -15.12508 -14.21964 -14.12936 -13.75243 -13.43347 -12.78935 -12.45840 -12.28719 -12.19849 -11.87740 -11.46358 -11.24873 -11.10590 -10.82505 -10.58301 -10.41757 -10.14158 -10.01217 -9.37295 -8.80396 -8.38961 -7.86440 -6.08958 -4.13394 1.60533 2.83508 3.28900 3.35354 3.37197 3.52960 3.60692 4.34403 4.39976 4.71643 4.82980 4.90086 5.18499 5.24806 5.26435 5.44340 5.67409 5.89024 6.64153 6.89024 7.00248 7.01974 7.05472 7.31805 7.62928 7.71911 7.99278 8.01733 8.37703 8.76493 8.91234 9.51423 10.96806 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.046753 B = 0.008198 C = 0.007753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.749939 B = 3414.736014 C = 3610.612564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.269 3.731 3 H 0.047 0.953 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.062 3.938 7 N -0.894 5.894 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.595 5.595 13 C 0.112 3.888 14 C -0.187 4.187 15 C 0.489 3.511 16 O -0.463 6.463 17 O -0.373 6.373 18 C 0.065 3.935 19 C 0.482 3.518 20 O -0.501 6.501 21 H 0.053 0.947 22 H 0.004 0.996 23 H 0.091 0.909 24 H 0.262 0.738 25 H 0.069 0.931 26 H 0.107 0.893 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.136 0.864 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.957 -0.625 8.796 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.170 3.830 3 H 0.064 0.936 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.534 5.534 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.201 1.201 12 N -0.329 5.329 13 C -0.013 4.013 14 C -0.227 4.227 15 C 0.330 3.670 16 O -0.344 6.344 17 O -0.293 6.293 18 C -0.012 4.012 19 C 0.266 3.734 20 O -0.375 6.375 21 H 0.072 0.928 22 H 0.023 0.977 23 H 0.109 0.891 24 H 0.072 0.928 25 H 0.087 0.913 26 H 0.125 0.875 27 H 0.131 0.869 28 H 0.131 0.869 29 H 0.154 0.846 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.579 -0.890 8.841 9.579 hybrid contribution 0.369 -0.283 -0.892 1.006 sum 3.948 -1.173 7.949 8.952 Atomic orbital electron populations 1.22162 0.97703 1.01526 1.00052 1.18999 0.91802 0.92074 0.80109 0.93571 1.21225 1.31119 1.12299 0.89943 0.92390 1.24843 0.95072 0.95034 0.98955 1.69861 1.36845 1.22933 1.23726 0.86462 0.79167 0.79327 0.82230 1.20570 1.21271 1.20056 1.48620 1.49207 1.10828 1.24237 1.21697 0.92283 0.99940 0.87333 1.22982 1.05661 0.95938 0.98070 1.23299 0.71871 0.85389 0.86453 1.90596 1.34262 1.87113 1.22389 1.86331 1.59054 1.39327 1.44636 1.23749 0.97739 0.99893 0.79779 1.20629 0.82810 0.82903 0.87052 1.90728 1.34547 1.65662 1.46550 0.92756 0.97667 0.89056 0.92782 0.91281 0.87466 0.86861 0.86931 0.84621 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.89 37.16 0.33 -3.42 16 2 C 0.27 6.28 2.68 -69.08 -0.18 6.10 16 3 H 0.05 1.10 7.58 -51.93 -0.39 0.70 16 4 C -0.51 -13.46 7.61 -34.44 -0.26 -13.72 16 5 H 0.06 1.59 7.51 -52.48 -0.39 1.19 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -24.59 11.32 55.43 0.63 -23.96 16 8 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.59 -11.23 2.46 -166.69 -0.41 -11.64 16 13 C 0.11 1.53 5.96 -3.47 -0.02 1.51 16 14 C -0.19 -2.31 6.02 -27.53 -0.17 -2.48 16 15 C 0.49 7.20 6.98 35.93 0.25 7.45 16 16 O -0.46 -7.75 17.89 -18.78 -0.34 -8.08 16 17 O -0.37 -5.84 10.31 -39.55 -0.41 -6.25 16 18 C 0.06 0.93 6.42 36.18 0.23 1.16 16 19 C 0.48 9.32 6.54 -11.01 -0.07 9.25 16 20 O -0.50 -11.90 14.20 5.55 0.08 -11.83 16 21 H 0.05 1.40 6.08 -51.93 -0.32 1.08 16 22 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 23 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 24 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 25 H 0.07 0.80 6.89 -51.93 -0.36 0.45 16 26 H 0.11 1.34 7.60 -51.93 -0.39 0.94 16 27 H 0.11 1.49 8.10 -51.93 -0.42 1.06 16 28 H 0.11 1.11 8.11 -51.93 -0.42 0.69 16 29 H 0.14 1.70 8.13 -51.93 -0.42 1.28 16 30 H 0.08 0.98 7.05 -51.93 -0.37 0.62 16 LS Contribution 253.02 15.07 3.81 3.81 Total: -1.00 -31.52 253.02 -5.00 -36.52 By element: Atomic # 1 Polarization: 1.09 SS G_CDS: -3.36 Total: -2.26 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: 0.01 Total: 7.43 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: 0.22 Total: -35.60 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.66 Total: -26.16 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.52 -5.00 -36.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048272.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.461 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds