Wall clock time and date at job start Mon Mar 30 2020 03:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46922 * 2 1 4 4 C 1.50698 * 109.47342 * 239.99987 * 2 1 3 5 5 H 1.08005 * 119.99819 * 240.00324 * 4 2 1 6 6 C 1.37875 * 120.00046 * 59.99665 * 4 2 1 7 7 N 1.31518 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 2 9 9 H 1.48510 * 109.46866 * 90.00390 * 8 6 4 10 10 H 1.48502 * 109.47245 * 210.00175 * 8 6 4 11 11 H 1.48494 * 109.47271 * 330.00312 * 8 6 4 12 12 N 1.46506 * 109.46940 * 119.99690 * 2 1 3 13 13 C 1.46755 * 119.94180 * 239.72065 * 12 2 1 14 14 C 1.53823 * 108.46538 * 110.21172 * 13 12 2 15 15 C 1.50547 * 109.25725 * 81.67118 * 14 13 12 16 16 O 1.20826 * 119.50400 * 119.28123 * 15 14 13 17 17 O 1.34327 * 120.99182 * 299.29715 * 15 14 13 18 18 C 1.45394 * 116.67707 * 61.20835 * 17 15 14 19 19 C 1.34331 * 119.93813 * 60.00375 * 12 2 1 20 20 O 1.21283 * 120.01151 * 357.78070 * 19 12 2 21 21 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47140 * 300.00300 * 1 2 3 23 23 H 1.09001 * 109.47230 * 59.99444 * 1 2 3 24 24 H 0.96997 * 119.99752 * 179.97438 * 7 6 4 25 25 H 1.08991 * 109.59573 * 229.96261 * 13 12 2 26 26 H 1.09006 * 109.59084 * 350.40684 * 13 12 2 27 27 H 1.09000 * 109.59316 * 321.69668 * 14 13 12 28 28 H 1.08997 * 109.48529 * 201.57675 * 14 13 12 29 29 H 1.09004 * 109.54561 * 160.47821 * 18 17 15 30 30 H 1.09001 * 109.53955 * 40.22814 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3427 -2.1618 -4.4118 10 1 2.4866 -0.1415 -5.1122 11 1 3.6293 -1.7584 -3.7121 12 7 2.0183 -0.6906 1.1963 13 6 2.8670 0.0221 2.1583 14 6 2.0599 0.2444 3.4488 15 6 2.1014 -1.0086 4.2824 16 8 2.5831 -0.9708 5.3898 17 8 1.6112 -2.1679 3.8134 18 6 2.2364 -2.7038 2.6151 19 6 1.6930 -1.9767 1.4076 20 8 0.9630 -2.5535 0.6297 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 0.7095 1.1617 -3.4844 25 1 3.7525 -0.5746 2.3768 26 1 3.1655 0.9835 1.7403 27 1 1.0258 0.4798 3.1972 28 1 2.4946 1.0703 4.0118 29 1 2.0125 -3.7673 2.5313 30 1 3.3155 -2.5607 2.6717 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261048272.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:29 Heat of formation + Delta-G solvation = -123.845770 kcal Electronic energy + Delta-G solvation = -16482.422922 eV Core-core repulsion = 13663.817170 eV Total energy + Delta-G solvation = -2818.605751 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.03753 -40.31811 -37.99737 -37.13746 -35.23638 -32.63088 -31.12557 -28.83031 -27.23191 -25.91205 -23.44369 -22.20535 -20.22600 -19.11659 -18.27745 -18.05941 -17.85417 -16.93715 -16.54037 -15.91478 -15.57989 -15.01511 -14.73290 -14.58946 -13.84459 -13.59398 -13.44511 -13.30508 -13.17623 -12.86982 -12.71818 -12.53435 -12.32404 -12.23707 -12.08021 -11.27518 -11.14051 -10.62316 -10.24136 -9.47347 -8.12194 -6.21849 0.45465 1.39380 1.43025 1.48339 1.51640 2.17443 2.31177 2.46088 3.15620 3.21190 3.49085 3.79823 3.84612 4.16784 4.25152 4.42124 4.65637 4.76873 4.91004 4.99735 5.15317 5.27728 5.62275 5.82900 5.88814 6.04232 6.16790 6.18454 6.68101 6.83911 7.30077 7.49120 8.91712 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.046753 B = 0.008198 C = 0.007753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.749939 B = 3414.736014 C = 3610.612564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.273 3.727 3 H 0.045 0.955 4 C -0.517 4.517 5 H 0.043 0.957 6 C 0.017 3.983 7 N -0.915 5.915 8 Si 0.951 3.049 9 H -0.288 1.288 10 H -0.278 1.278 11 H -0.270 1.270 12 N -0.598 5.598 13 C 0.106 3.894 14 C -0.173 4.173 15 C 0.492 3.508 16 O -0.484 6.484 17 O -0.386 6.386 18 C 0.079 3.921 19 C 0.472 3.528 20 O -0.557 6.557 21 H 0.030 0.970 22 H 0.027 0.973 23 H 0.065 0.935 24 H 0.263 0.737 25 H 0.097 0.903 26 H 0.122 0.878 27 H 0.107 0.893 28 H 0.145 0.855 29 H 0.154 0.846 30 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.340 -0.425 9.814 11.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.171 3.829 3 H 0.063 0.937 4 C -0.556 4.556 5 H 0.062 0.938 6 C -0.182 4.182 7 N -0.555 5.555 8 Si 0.778 3.222 9 H -0.214 1.214 10 H -0.203 1.203 11 H -0.194 1.194 12 N -0.330 5.330 13 C -0.016 4.016 14 C -0.212 4.212 15 C 0.335 3.665 16 O -0.366 6.366 17 O -0.307 6.307 18 C 0.003 3.997 19 C 0.258 3.742 20 O -0.435 6.435 21 H 0.049 0.951 22 H 0.046 0.954 23 H 0.084 0.916 24 H 0.072 0.928 25 H 0.115 0.885 26 H 0.140 0.860 27 H 0.125 0.875 28 H 0.163 0.837 29 H 0.171 0.829 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.992 -0.671 9.895 11.103 hybrid contribution -0.074 -0.338 -1.161 1.212 sum 4.918 -1.009 8.733 10.074 Atomic orbital electron populations 1.21967 0.98610 0.99800 0.99859 1.18665 0.91093 0.91947 0.81159 0.93744 1.21458 1.30767 1.11791 0.91538 0.93827 1.25509 0.95499 0.95786 1.01399 1.69949 1.37603 1.23838 1.24156 0.85659 0.78587 0.78293 0.79657 1.21419 1.20312 1.19433 1.48579 1.49503 1.11101 1.23861 1.22042 0.92402 1.00679 0.86517 1.22922 1.05397 0.95655 0.97244 1.23658 0.70990 0.85635 0.86256 1.90598 1.35378 1.87288 1.23325 1.86328 1.59559 1.40134 1.44674 1.23726 0.99229 0.99785 0.76951 1.21534 0.81868 0.82845 0.87908 1.90701 1.36998 1.66915 1.48904 0.95106 0.95415 0.91603 0.92790 0.88515 0.86023 0.87491 0.83656 0.82878 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.98 8.89 71.98 0.64 -6.34 16 2 C 0.27 12.62 2.68 44.24 0.12 12.74 16 3 H 0.04 2.07 7.58 -2.39 -0.02 2.06 16 4 C -0.52 -27.52 7.61 25.60 0.19 -27.32 16 5 H 0.04 2.40 7.51 -2.91 -0.02 2.37 16 6 C 0.02 0.92 5.30 84.65 0.45 1.37 16 7 N -0.92 -50.69 11.32 21.45 0.24 -50.44 16 8 Si 0.95 43.71 29.54 68.60 2.03 45.73 16 9 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 12 N -0.60 -21.63 2.46 -799.94 -1.97 -23.60 16 13 C 0.11 2.53 5.96 86.61 0.52 3.05 16 14 C -0.17 -3.69 6.02 30.08 0.18 -3.51 16 15 C 0.49 13.03 6.98 71.19 0.50 13.52 16 16 O -0.48 -14.84 17.89 21.99 0.39 -14.45 16 17 O -0.39 -11.13 10.31 -52.33 -0.54 -11.67 16 18 C 0.08 2.05 6.42 71.35 0.46 2.51 16 19 C 0.47 17.73 6.54 87.84 0.57 18.30 16 20 O -0.56 -26.78 14.20 -3.04 -0.04 -26.83 16 21 H 0.03 1.60 6.08 -2.39 -0.01 1.59 16 22 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.07 3.52 6.07 -2.39 -0.01 3.50 16 24 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 25 H 0.10 1.82 6.89 -2.39 -0.02 1.81 16 26 H 0.12 2.61 7.60 -2.38 -0.02 2.59 16 27 H 0.11 2.51 8.10 -2.39 -0.02 2.49 16 28 H 0.15 2.21 8.11 -2.39 -0.02 2.19 16 29 H 0.15 3.47 8.13 -2.38 -0.02 3.45 16 30 H 0.12 2.30 7.05 -2.39 -0.02 2.28 16 Total: -1.00 -68.82 253.02 4.89 -63.93 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: 1.15 Total: 2.99 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: 3.63 Total: 14.33 kcal Atomic # 7 Polarization: -72.32 SS G_CDS: -1.73 Total: -74.04 kcal Atomic # 8 Polarization: -52.75 SS G_CDS: -0.19 Total: -52.94 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Total: -68.82 4.89 -63.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048272.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.915 kcal (2) G-P(sol) polarization free energy of solvation -68.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds