Wall clock time and date at job start Mon Mar 30 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 C 1.50694 * 109.47404 * 120.00165 * 2 1 3 5 5 H 1.07998 * 119.99990 * 84.93913 * 4 2 1 6 6 C 1.37881 * 120.00169 * 264.95078 * 4 2 1 7 7 N 1.31511 * 119.99936 * 176.63186 * 6 4 2 8 8 Si 1.86800 * 119.99912 * 356.62306 * 6 4 2 9 9 H 1.48497 * 109.47587 * 270.13565 * 8 6 4 10 10 H 1.48507 * 109.46892 * 30.13552 * 8 6 4 11 11 H 1.48498 * 109.47241 * 150.13258 * 8 6 4 12 12 N 1.46498 * 109.47019 * 240.00206 * 2 1 3 13 13 C 1.46758 * 119.93600 * 119.99701 * 12 2 1 14 14 C 1.53320 * 108.75497 * 249.83810 * 13 12 2 15 15 C 1.50550 * 109.29932 * 278.47120 * 14 13 12 16 16 O 1.20833 * 119.50062 * 240.60790 * 15 14 13 17 17 O 1.34326 * 120.99355 * 60.63561 * 15 14 13 18 18 C 1.45395 * 116.68259 * 298.75454 * 17 15 14 19 19 C 1.34333 * 119.93348 * 299.72696 * 12 2 1 20 20 O 1.21283 * 120.01795 * 2.16859 * 19 12 2 21 21 H 1.09003 * 109.47263 * 66.58605 * 1 2 3 22 22 H 1.08995 * 109.47247 * 186.58475 * 1 2 3 23 23 H 1.09005 * 109.46630 * 306.58707 * 1 2 3 24 24 H 0.97006 * 119.99499 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.58760 * 9.62593 * 13 12 2 26 26 H 1.09003 * 109.58432 * 130.05775 * 13 12 2 27 27 H 1.08995 * 109.49882 * 38.42190 * 14 13 12 28 28 H 1.09007 * 109.49475 * 158.49053 * 14 13 12 29 29 H 1.09000 * 109.53944 * 199.53076 * 18 17 15 30 30 H 1.08997 * 109.54104 * 319.70042 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.1346 -1.7855 1.2292 6 6 2.3613 0.0122 2.3577 7 7 2.7364 -0.6122 3.4527 8 14 2.2744 1.8779 2.3295 9 1 3.5832 2.4280 1.8943 10 1 1.2160 2.3098 1.3815 11 1 1.9546 2.3792 3.6903 12 7 2.0183 -0.6906 -1.1962 13 6 2.8619 0.0241 -2.1613 14 6 2.0593 0.2450 -3.4488 15 6 2.1008 -1.0081 -4.2823 16 8 2.5820 -0.9703 -5.3900 17 8 1.6105 -2.1674 -3.8132 18 6 2.2360 -2.7037 -2.6152 19 6 1.6975 -1.9782 -1.4047 20 8 0.9721 -2.5569 -0.6238 21 1 -0.3634 0.4084 -0.9431 22 1 -0.3633 -1.0208 0.1178 23 1 -0.3633 0.6126 0.8252 24 1 2.9682 -0.1038 4.2456 25 1 3.1579 0.9871 -1.7452 26 1 3.7492 -0.5698 -2.3810 27 1 1.0253 0.4805 -3.1971 28 1 2.4941 1.0713 -4.0113 29 1 2.0118 -3.7671 -2.5318 30 1 3.3152 -2.5620 -2.6728 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261048274.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:31 Heat of formation + Delta-G solvation = -102.270134 kcal Electronic energy + Delta-G solvation = -16509.607205 eV Core-core repulsion = 13691.937043 eV Total energy + Delta-G solvation = -2817.670162 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.84483 -38.97222 -36.80204 -35.71343 -33.33688 -31.48735 -30.01753 -27.71405 -25.29656 -24.75849 -21.76462 -20.98633 -18.72712 -17.88036 -17.12904 -16.85735 -16.53172 -15.47046 -15.20178 -14.24338 -14.06082 -13.86410 -13.53085 -12.78451 -12.57908 -12.44185 -12.33489 -12.16344 -11.96498 -11.38499 -11.26499 -11.14452 -10.72148 -10.61187 -10.13026 -9.84475 -9.57292 -8.80358 -8.67181 -7.94352 -6.18363 -4.18909 1.55871 2.78419 3.12293 3.21569 3.24908 3.47062 3.48988 4.26263 4.28060 4.64287 4.80754 4.84009 5.13303 5.15582 5.20823 5.40940 5.56745 5.80682 6.16716 6.39117 6.59164 6.62430 6.96697 7.18382 7.27484 7.34057 7.48454 8.01882 8.43528 8.73795 8.98411 9.41030 10.94374 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.039595 B = 0.009194 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.987835 B = 3044.641843 C = 3367.245199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.236 3.764 3 H 0.046 0.954 4 C -0.514 4.514 5 H 0.088 0.912 6 C 0.073 3.927 7 N -0.890 5.890 8 Si 0.869 3.131 9 H -0.275 1.275 10 H -0.263 1.263 11 H -0.284 1.284 12 N -0.592 5.592 13 C 0.109 3.891 14 C -0.187 4.187 15 C 0.489 3.511 16 O -0.462 6.462 17 O -0.372 6.372 18 C 0.065 3.935 19 C 0.487 3.513 20 O -0.503 6.503 21 H 0.020 0.980 22 H 0.071 0.929 23 H 0.051 0.949 24 H 0.266 0.734 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.138 0.862 30 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.720 3.001 -11.364 11.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.136 3.864 3 H 0.064 0.936 4 C -0.553 4.553 5 H 0.106 0.894 6 C -0.130 4.130 7 N -0.527 5.527 8 Si 0.696 3.304 9 H -0.201 1.201 10 H -0.188 1.188 11 H -0.210 1.210 12 N -0.326 5.326 13 C -0.016 4.016 14 C -0.227 4.227 15 C 0.329 3.671 16 O -0.342 6.342 17 O -0.293 6.293 18 C -0.011 4.011 19 C 0.271 3.729 20 O -0.377 6.377 21 H 0.039 0.961 22 H 0.090 0.910 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.123 0.877 26 H 0.091 0.909 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.156 0.844 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.482 2.639 -11.347 11.660 hybrid contribution 0.149 1.191 0.231 1.223 sum 0.631 3.831 -11.116 11.775 Atomic orbital electron populations 1.22304 0.97869 1.02840 0.98262 1.19384 0.91597 0.92254 0.83136 0.93585 1.21237 1.42899 0.96624 0.94515 0.89442 1.25029 0.94454 0.98051 0.95440 1.69892 1.44902 1.35783 1.02163 0.87000 0.78859 0.86612 0.77978 1.20102 1.18759 1.21015 1.48759 1.49623 1.10680 1.23565 1.21635 0.92676 0.99897 0.87348 1.22903 1.05555 0.96139 0.98089 1.23261 0.71964 0.85370 0.86458 1.90604 1.34148 1.87101 1.22334 1.86338 1.59027 1.39257 1.44653 1.23728 0.97914 0.99899 0.79569 1.20640 0.82450 0.82724 0.87064 1.90730 1.34980 1.65559 1.46471 0.96067 0.90979 0.93038 0.92437 0.87742 0.90889 0.86959 0.86843 0.84449 0.89501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.99 37.16 0.33 -2.92 16 2 C 0.24 5.14 2.29 -69.09 -0.16 4.98 16 3 H 0.05 0.95 4.69 -51.93 -0.24 0.71 16 4 C -0.51 -13.81 8.42 -34.44 -0.29 -14.10 16 5 H 0.09 2.69 6.83 -52.49 -0.36 2.33 16 6 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 7 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 8 Si 0.87 19.70 27.05 -169.99 -4.60 15.10 16 9 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.26 -5.57 6.59 56.52 0.37 -5.20 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 12 N -0.59 -10.83 2.47 -167.01 -0.41 -11.24 16 13 C 0.11 1.44 5.92 -3.74 -0.02 1.42 16 14 C -0.19 -2.18 6.01 -27.79 -0.17 -2.34 16 15 C 0.49 6.92 6.98 35.93 0.25 7.18 16 16 O -0.46 -7.52 17.89 -18.78 -0.34 -7.85 16 17 O -0.37 -5.62 10.32 -39.54 -0.41 -6.03 16 18 C 0.07 0.92 6.41 36.18 0.23 1.15 16 19 C 0.49 9.19 6.62 -11.01 -0.07 9.12 16 20 O -0.50 -11.69 13.73 5.56 0.08 -11.62 16 21 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 22 H 0.07 1.67 6.32 -51.93 -0.33 1.35 16 23 H 0.05 1.08 8.03 -51.93 -0.42 0.66 16 24 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.10 1.24 7.60 -51.93 -0.39 0.85 16 26 H 0.07 0.84 6.90 -51.93 -0.36 0.48 16 27 H 0.11 1.33 8.10 -51.93 -0.42 0.91 16 28 H 0.11 1.04 8.11 -51.93 -0.42 0.62 16 29 H 0.14 1.70 8.13 -51.93 -0.42 1.28 16 30 H 0.09 1.00 7.07 -51.93 -0.37 0.64 16 LS Contribution 251.56 15.07 3.79 3.79 Total: -1.00 -32.77 251.56 -4.42 -37.20 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -3.32 Total: -0.21 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: 0.01 Total: 6.39 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.36 Total: -36.76 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: -0.67 Total: -25.50 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -4.60 Total: 15.10 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.77 -4.42 -37.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048274.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.074 kcal (2) G-P(sol) polarization free energy of solvation -32.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds