Wall clock time and date at job start Mon Mar 30 2020 03:31:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 H 1.09000 * 109.46873 * 2 1
4 4 C 1.50694 * 109.47404 * 120.00165 * 2 1 3
5 5 H 1.07998 * 119.99990 * 84.93913 * 4 2 1
6 6 C 1.37881 * 120.00169 * 264.95078 * 4 2 1
7 7 N 1.31511 * 119.99936 * 176.63186 * 6 4 2
8 8 Si 1.86800 * 119.99912 * 356.62306 * 6 4 2
9 9 H 1.48497 * 109.47587 * 270.13565 * 8 6 4
10 10 H 1.48507 * 109.46892 * 30.13552 * 8 6 4
11 11 H 1.48498 * 109.47241 * 150.13258 * 8 6 4
12 12 N 1.46498 * 109.47019 * 240.00206 * 2 1 3
13 13 C 1.46758 * 119.93600 * 119.99701 * 12 2 1
14 14 C 1.53320 * 108.75497 * 249.83810 * 13 12 2
15 15 C 1.50550 * 109.29932 * 278.47120 * 14 13 12
16 16 O 1.20833 * 119.50062 * 240.60790 * 15 14 13
17 17 O 1.34326 * 120.99355 * 60.63561 * 15 14 13
18 18 C 1.45395 * 116.68259 * 298.75454 * 17 15 14
19 19 C 1.34333 * 119.93348 * 299.72696 * 12 2 1
20 20 O 1.21283 * 120.01795 * 2.16859 * 19 12 2
21 21 H 1.09003 * 109.47263 * 66.58605 * 1 2 3
22 22 H 1.08995 * 109.47247 * 186.58475 * 1 2 3
23 23 H 1.09005 * 109.46630 * 306.58707 * 1 2 3
24 24 H 0.97006 * 119.99499 * 179.97438 * 7 6 4
25 25 H 1.08998 * 109.58760 * 9.62593 * 13 12 2
26 26 H 1.09003 * 109.58432 * 130.05775 * 13 12 2
27 27 H 1.08995 * 109.49882 * 38.42190 * 14 13 12
28 28 H 1.09007 * 109.49475 * 158.49053 * 14 13 12
29 29 H 1.09000 * 109.53944 * 199.53076 * 18 17 15
30 30 H 1.08997 * 109.54104 * 319.70042 * 18 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2304
5 1 2.1346 -1.7855 1.2292
6 6 2.3613 0.0122 2.3577
7 7 2.7364 -0.6122 3.4527
8 14 2.2744 1.8779 2.3295
9 1 3.5832 2.4280 1.8943
10 1 1.2160 2.3098 1.3815
11 1 1.9546 2.3792 3.6903
12 7 2.0183 -0.6906 -1.1962
13 6 2.8619 0.0241 -2.1613
14 6 2.0593 0.2450 -3.4488
15 6 2.1008 -1.0081 -4.2823
16 8 2.5820 -0.9703 -5.3900
17 8 1.6105 -2.1674 -3.8132
18 6 2.2360 -2.7037 -2.6152
19 6 1.6975 -1.9782 -1.4047
20 8 0.9721 -2.5569 -0.6238
21 1 -0.3634 0.4084 -0.9431
22 1 -0.3633 -1.0208 0.1178
23 1 -0.3633 0.6126 0.8252
24 1 2.9682 -0.1038 4.2456
25 1 3.1579 0.9871 -1.7452
26 1 3.7492 -0.5698 -2.3810
27 1 1.0253 0.4805 -3.1971
28 1 2.4941 1.0713 -4.0113
29 1 2.0118 -3.7671 -2.5318
30 1 3.3152 -2.5620 -2.6728
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261048274.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:31:31
Heat of formation + Delta-G solvation = -125.896177 kcal
Electronic energy + Delta-G solvation = -16510.631707 eV
Core-core repulsion = 13691.937043 eV
Total energy + Delta-G solvation = -2818.694664 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.21 seconds
Orbital eigenvalues (eV)
-42.06412 -40.36490 -38.01146 -37.20748 -35.07973 -33.16149 -31.36871 -29.01395
-27.25744 -25.93204 -23.30428 -22.18413 -20.18072 -19.50654 -18.39230 -18.07484
-17.97845 -17.03230 -16.51711 -15.80194 -15.61098 -15.11299 -14.78427 -14.57911
-14.11934 -13.76884 -13.69058 -13.44671 -13.16821 -12.98190 -12.62938 -12.58274
-12.40493 -12.28887 -11.74856 -11.38770 -11.17929 -10.72073 -10.36855 -9.49497
-8.25410 -6.32748 0.44880 1.37583 1.40760 1.47379 1.51123 2.10808
2.31322 2.36358 3.12080 3.16562 3.46136 3.77858 3.85600 4.14093
4.23533 4.39669 4.45266 4.62603 4.77422 4.84027 4.95610 4.97377
5.52781 5.57373 5.69082 5.87780 6.18614 6.32725 6.64572 6.79612
7.22601 7.38473 8.91826
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.039595 B = 0.009194 C = 0.008313
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 706.987835 B = 3044.641843 C = 3367.245199
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.239 3.761
3 H 0.071 0.929
4 C -0.517 4.517
5 H 0.028 0.972
6 C 0.007 3.993
7 N -0.951 5.951
8 Si 0.943 3.057
9 H -0.255 1.255
10 H -0.231 1.231
11 H -0.293 1.293
12 N -0.596 5.596
13 C 0.100 3.900
14 C -0.172 4.172
15 C 0.490 3.510
16 O -0.485 6.485
17 O -0.385 6.385
18 C 0.079 3.921
19 C 0.476 3.524
20 O -0.561 6.561
21 H 0.054 0.946
22 H 0.039 0.961
23 H 0.049 0.951
24 H 0.266 0.734
25 H 0.127 0.873
26 H 0.093 0.907
27 H 0.115 0.885
28 H 0.148 0.852
29 H 0.151 0.849
30 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.234 5.707 -13.565 14.768
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.137 3.863
3 H 0.089 0.911
4 C -0.556 4.556
5 H 0.047 0.953
6 C -0.190 4.190
7 N -0.591 5.591
8 Si 0.765 3.235
9 H -0.179 1.179
10 H -0.154 1.154
11 H -0.220 1.220
12 N -0.329 5.329
13 C -0.022 4.022
14 C -0.211 4.211
15 C 0.332 3.668
16 O -0.366 6.366
17 O -0.306 6.306
18 C 0.003 3.997
19 C 0.262 3.738
20 O -0.439 6.439
21 H 0.073 0.927
22 H 0.058 0.942
23 H 0.068 0.932
24 H 0.075 0.925
25 H 0.145 0.855
26 H 0.111 0.889
27 H 0.133 0.867
28 H 0.166 0.834
29 H 0.169 0.831
30 H 0.136 0.864
Dipole moment (debyes) X Y Z Total
from point charges 1.012 5.357 -13.616 14.667
hybrid contribution -0.017 0.227 0.882 0.911
sum 0.995 5.584 -12.734 13.940
Atomic orbital electron populations
1.22193 0.97530 1.01128 0.99995 1.19172 0.91855 0.92837 0.82429
0.91125 1.21394 1.42662 0.94312 0.97240 0.95334 1.26054 0.93974
1.04406 0.94560 1.70093 1.47345 1.38342 1.03291 0.85814 0.80614
0.78768 0.78265 1.17927 1.15437 1.21957 1.48638 1.49911 1.10881
1.23424 1.22022 0.92630 1.00787 0.86773 1.22854 1.05779 0.95536
0.96905 1.23749 0.71008 0.85720 0.86311 1.90606 1.35287 1.87300
1.23432 1.86330 1.59465 1.40281 1.44486 1.23658 0.99176 0.99722
0.77100 1.21509 0.81576 0.82869 0.87818 1.90711 1.37538 1.66879
1.48789 0.92659 0.94173 0.93187 0.92548 0.85455 0.88922 0.86684
0.83358 0.83136 0.86364
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -6.13 8.99 71.98 0.65 -5.48 16
2 C 0.24 9.99 2.29 44.24 0.10 10.09 16
3 H 0.07 2.62 4.69 -2.39 -0.01 2.61 16
4 C -0.52 -28.41 8.42 25.60 0.22 -28.20 16
5 H 0.03 1.86 6.83 -2.91 -0.02 1.84 16
6 C 0.01 0.40 5.47 84.66 0.46 0.87 16
7 N -0.95 -58.36 13.96 21.45 0.30 -58.06 16
8 Si 0.94 39.49 27.05 68.60 1.86 41.34 16
9 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16
10 H -0.23 -8.44 6.59 99.48 0.66 -7.78 16
11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16
12 N -0.60 -20.56 2.47 -800.94 -1.98 -22.54 16
13 C 0.10 2.21 5.92 86.44 0.51 2.72 16
14 C -0.17 -3.19 6.01 29.91 0.18 -3.01 16
15 C 0.49 12.26 6.98 71.19 0.50 12.75 16
16 O -0.48 -14.33 17.89 21.97 0.39 -13.94 16
17 O -0.38 -10.73 10.32 -52.32 -0.54 -11.27 16
18 C 0.08 2.09 6.41 71.35 0.46 2.55 16
19 C 0.48 17.76 6.62 87.84 0.58 18.34 16
20 O -0.56 -27.13 13.73 -3.04 -0.04 -27.18 16
21 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16
22 H 0.04 1.89 6.32 -2.39 -0.02 1.87 16
23 H 0.05 2.01 8.03 -2.38 -0.02 1.99 16
24 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16
25 H 0.13 2.30 7.60 -2.39 -0.02 2.29 16
26 H 0.09 1.72 6.90 -2.39 -0.02 1.71 16
27 H 0.12 2.19 8.10 -2.39 -0.02 2.17 16
28 H 0.15 1.83 8.11 -2.38 -0.02 1.81 16
29 H 0.15 3.56 8.13 -2.39 -0.02 3.54 16
30 H 0.12 2.38 7.07 -2.39 -0.02 2.36 16
Total: -1.00 -76.15 251.56 4.75 -71.40
By element:
Atomic # 1 Polarization: 8.50 SS G_CDS: 1.10 Total: 9.61 kcal
Atomic # 6 Polarization: 6.98 SS G_CDS: 3.66 Total: 10.63 kcal
Atomic # 7 Polarization: -78.92 SS G_CDS: -1.68 Total: -80.59 kcal
Atomic # 8 Polarization: -52.20 SS G_CDS: -0.19 Total: -52.39 kcal
Atomic # 14 Polarization: 39.49 SS G_CDS: 1.86 Total: 41.34 kcal
Total: -76.15 4.75 -71.40 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261048274.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.494 kcal
(2) G-P(sol) polarization free energy of solvation -76.153 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.647 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.402 kcal
(6) G-S(sol) free energy of system = (1) + (5) -125.896 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.21 seconds