Wall clock time and date at job start Mon Mar 30 2020 03:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.46873 * 2 1 4 4 C 1.50694 * 109.47404 * 120.00165 * 2 1 3 5 5 H 1.07998 * 119.99990 * 84.93913 * 4 2 1 6 6 C 1.37881 * 120.00169 * 264.95078 * 4 2 1 7 7 N 1.31511 * 119.99936 * 176.63186 * 6 4 2 8 8 Si 1.86800 * 119.99912 * 356.62306 * 6 4 2 9 9 H 1.48497 * 109.47587 * 270.13565 * 8 6 4 10 10 H 1.48507 * 109.46892 * 30.13552 * 8 6 4 11 11 H 1.48498 * 109.47241 * 150.13258 * 8 6 4 12 12 N 1.46498 * 109.47019 * 240.00206 * 2 1 3 13 13 C 1.46758 * 119.93600 * 119.99701 * 12 2 1 14 14 C 1.53320 * 108.75497 * 249.83810 * 13 12 2 15 15 C 1.50550 * 109.29932 * 278.47120 * 14 13 12 16 16 O 1.20833 * 119.50062 * 240.60790 * 15 14 13 17 17 O 1.34326 * 120.99355 * 60.63561 * 15 14 13 18 18 C 1.45395 * 116.68259 * 298.75454 * 17 15 14 19 19 C 1.34333 * 119.93348 * 299.72696 * 12 2 1 20 20 O 1.21283 * 120.01795 * 2.16859 * 19 12 2 21 21 H 1.09003 * 109.47263 * 66.58605 * 1 2 3 22 22 H 1.08995 * 109.47247 * 186.58475 * 1 2 3 23 23 H 1.09005 * 109.46630 * 306.58707 * 1 2 3 24 24 H 0.97006 * 119.99499 * 179.97438 * 7 6 4 25 25 H 1.08998 * 109.58760 * 9.62593 * 13 12 2 26 26 H 1.09003 * 109.58432 * 130.05775 * 13 12 2 27 27 H 1.08995 * 109.49882 * 38.42190 * 14 13 12 28 28 H 1.09007 * 109.49475 * 158.49053 * 14 13 12 29 29 H 1.09000 * 109.53944 * 199.53076 * 18 17 15 30 30 H 1.08997 * 109.54104 * 319.70042 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.1346 -1.7855 1.2292 6 6 2.3613 0.0122 2.3577 7 7 2.7364 -0.6122 3.4527 8 14 2.2744 1.8779 2.3295 9 1 3.5832 2.4280 1.8943 10 1 1.2160 2.3098 1.3815 11 1 1.9546 2.3792 3.6903 12 7 2.0183 -0.6906 -1.1962 13 6 2.8619 0.0241 -2.1613 14 6 2.0593 0.2450 -3.4488 15 6 2.1008 -1.0081 -4.2823 16 8 2.5820 -0.9703 -5.3900 17 8 1.6105 -2.1674 -3.8132 18 6 2.2360 -2.7037 -2.6152 19 6 1.6975 -1.9782 -1.4047 20 8 0.9721 -2.5569 -0.6238 21 1 -0.3634 0.4084 -0.9431 22 1 -0.3633 -1.0208 0.1178 23 1 -0.3633 0.6126 0.8252 24 1 2.9682 -0.1038 4.2456 25 1 3.1579 0.9871 -1.7452 26 1 3.7492 -0.5698 -2.3810 27 1 1.0253 0.4805 -3.1971 28 1 2.4941 1.0713 -4.0113 29 1 2.0118 -3.7671 -2.5318 30 1 3.3152 -2.5620 -2.6728 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261048274.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:31 Heat of formation + Delta-G solvation = -125.896177 kcal Electronic energy + Delta-G solvation = -16510.631707 eV Core-core repulsion = 13691.937043 eV Total energy + Delta-G solvation = -2818.694664 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.06412 -40.36490 -38.01146 -37.20748 -35.07973 -33.16149 -31.36871 -29.01395 -27.25744 -25.93204 -23.30428 -22.18413 -20.18072 -19.50654 -18.39230 -18.07484 -17.97845 -17.03230 -16.51711 -15.80194 -15.61098 -15.11299 -14.78427 -14.57911 -14.11934 -13.76884 -13.69058 -13.44671 -13.16821 -12.98190 -12.62938 -12.58274 -12.40493 -12.28887 -11.74856 -11.38770 -11.17929 -10.72073 -10.36855 -9.49497 -8.25410 -6.32748 0.44880 1.37583 1.40760 1.47379 1.51123 2.10808 2.31322 2.36358 3.12080 3.16562 3.46136 3.77858 3.85600 4.14093 4.23533 4.39669 4.45266 4.62603 4.77422 4.84027 4.95610 4.97377 5.52781 5.57373 5.69082 5.87780 6.18614 6.32725 6.64572 6.79612 7.22601 7.38473 8.91826 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.039595 B = 0.009194 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.987835 B = 3044.641843 C = 3367.245199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.239 3.761 3 H 0.071 0.929 4 C -0.517 4.517 5 H 0.028 0.972 6 C 0.007 3.993 7 N -0.951 5.951 8 Si 0.943 3.057 9 H -0.255 1.255 10 H -0.231 1.231 11 H -0.293 1.293 12 N -0.596 5.596 13 C 0.100 3.900 14 C -0.172 4.172 15 C 0.490 3.510 16 O -0.485 6.485 17 O -0.385 6.385 18 C 0.079 3.921 19 C 0.476 3.524 20 O -0.561 6.561 21 H 0.054 0.946 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.266 0.734 25 H 0.127 0.873 26 H 0.093 0.907 27 H 0.115 0.885 28 H 0.148 0.852 29 H 0.151 0.849 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.234 5.707 -13.565 14.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.137 3.863 3 H 0.089 0.911 4 C -0.556 4.556 5 H 0.047 0.953 6 C -0.190 4.190 7 N -0.591 5.591 8 Si 0.765 3.235 9 H -0.179 1.179 10 H -0.154 1.154 11 H -0.220 1.220 12 N -0.329 5.329 13 C -0.022 4.022 14 C -0.211 4.211 15 C 0.332 3.668 16 O -0.366 6.366 17 O -0.306 6.306 18 C 0.003 3.997 19 C 0.262 3.738 20 O -0.439 6.439 21 H 0.073 0.927 22 H 0.058 0.942 23 H 0.068 0.932 24 H 0.075 0.925 25 H 0.145 0.855 26 H 0.111 0.889 27 H 0.133 0.867 28 H 0.166 0.834 29 H 0.169 0.831 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 1.012 5.357 -13.616 14.667 hybrid contribution -0.017 0.227 0.882 0.911 sum 0.995 5.584 -12.734 13.940 Atomic orbital electron populations 1.22193 0.97530 1.01128 0.99995 1.19172 0.91855 0.92837 0.82429 0.91125 1.21394 1.42662 0.94312 0.97240 0.95334 1.26054 0.93974 1.04406 0.94560 1.70093 1.47345 1.38342 1.03291 0.85814 0.80614 0.78768 0.78265 1.17927 1.15437 1.21957 1.48638 1.49911 1.10881 1.23424 1.22022 0.92630 1.00787 0.86773 1.22854 1.05779 0.95536 0.96905 1.23749 0.71008 0.85720 0.86311 1.90606 1.35287 1.87300 1.23432 1.86330 1.59465 1.40281 1.44486 1.23658 0.99176 0.99722 0.77100 1.21509 0.81576 0.82869 0.87818 1.90711 1.37538 1.66879 1.48789 0.92659 0.94173 0.93187 0.92548 0.85455 0.88922 0.86684 0.83358 0.83136 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.13 8.99 71.98 0.65 -5.48 16 2 C 0.24 9.99 2.29 44.24 0.10 10.09 16 3 H 0.07 2.62 4.69 -2.39 -0.01 2.61 16 4 C -0.52 -28.41 8.42 25.60 0.22 -28.20 16 5 H 0.03 1.86 6.83 -2.91 -0.02 1.84 16 6 C 0.01 0.40 5.47 84.66 0.46 0.87 16 7 N -0.95 -58.36 13.96 21.45 0.30 -58.06 16 8 Si 0.94 39.49 27.05 68.60 1.86 41.34 16 9 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 10 H -0.23 -8.44 6.59 99.48 0.66 -7.78 16 11 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 12 N -0.60 -20.56 2.47 -800.94 -1.98 -22.54 16 13 C 0.10 2.21 5.92 86.44 0.51 2.72 16 14 C -0.17 -3.19 6.01 29.91 0.18 -3.01 16 15 C 0.49 12.26 6.98 71.19 0.50 12.75 16 16 O -0.48 -14.33 17.89 21.97 0.39 -13.94 16 17 O -0.38 -10.73 10.32 -52.32 -0.54 -11.27 16 18 C 0.08 2.09 6.41 71.35 0.46 2.55 16 19 C 0.48 17.76 6.62 87.84 0.58 18.34 16 20 O -0.56 -27.13 13.73 -3.04 -0.04 -27.18 16 21 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.04 1.89 6.32 -2.39 -0.02 1.87 16 23 H 0.05 2.01 8.03 -2.38 -0.02 1.99 16 24 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 25 H 0.13 2.30 7.60 -2.39 -0.02 2.29 16 26 H 0.09 1.72 6.90 -2.39 -0.02 1.71 16 27 H 0.12 2.19 8.10 -2.39 -0.02 2.17 16 28 H 0.15 1.83 8.11 -2.38 -0.02 1.81 16 29 H 0.15 3.56 8.13 -2.39 -0.02 3.54 16 30 H 0.12 2.38 7.07 -2.39 -0.02 2.36 16 Total: -1.00 -76.15 251.56 4.75 -71.40 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 1.10 Total: 9.61 kcal Atomic # 6 Polarization: 6.98 SS G_CDS: 3.66 Total: 10.63 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -1.68 Total: -80.59 kcal Atomic # 8 Polarization: -52.20 SS G_CDS: -0.19 Total: -52.39 kcal Atomic # 14 Polarization: 39.49 SS G_CDS: 1.86 Total: 41.34 kcal Total: -76.15 4.75 -71.40 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261048274.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.494 kcal (2) G-P(sol) polarization free energy of solvation -76.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds