Wall clock time and date at job start Mon Mar 30 2020 03:30:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09002 * 109.47153 * 2 1
4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3
5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1
6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1
7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2
8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2
9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4
10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4
11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4
12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3
13 13 C 1.33696 * 118.62524 * 299.73582 * 12 2 1
14 14 O 1.21280 * 118.37762 * 355.34635 * 13 12 2
15 15 C 1.50249 * 123.21003 * 175.07237 * 13 12 2
16 16 O 1.45471 * 109.91275 * 17.53533 * 15 13 12
17 17 C 1.35270 * 114.66311 * 316.82687 * 16 15 13
18 18 O 1.20826 * 121.43938 * 238.58044 * 17 16 15
19 19 C 1.46233 * 118.62559 * 119.99759 * 12 2 1
20 20 H 1.08997 * 109.53246 * 314.07321 * 19 12 2
21 21 C 1.53004 * 109.52894 * 74.29500 * 19 12 2
22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3
24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3
25 25 H 0.96999 * 119.99874 * 180.02562 * 7 6 4
26 26 H 1.08997 * 109.58965 * 257.29478 * 15 13 12
27 27 H 1.09002 * 109.24074 * 137.56348 * 15 13 12
28 28 H 1.08990 * 109.47068 * 59.99687 * 21 19 12
29 29 H 1.08998 * 109.46804 * 179.97438 * 21 19 12
30 30 H 1.08998 * 109.46915 * 299.99267 * 21 19 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.6533 -1.5885 1.1315
6 6 1.6993 -0.2393 2.4828
7 7 2.1372 -0.8595 3.5566
8 14 0.6248 1.2791 2.6541
9 1 -0.8028 0.8728 2.6997
10 1 0.9759 1.9952 3.9068
11 1 0.8471 2.1766 1.4920
12 7 2.0184 -0.6906 -1.1961
13 6 1.6832 -1.9721 -1.3776
14 8 1.0600 -2.5344 -0.5022
15 6 2.0355 -2.7476 -2.6153
16 8 3.0972 -2.0673 -3.3407
17 6 2.9476 -0.7261 -3.4337
18 8 2.8893 -0.1713 -4.5055
19 6 2.8570 0.0488 -2.1387
20 1 2.4156 1.0270 -2.3294
21 6 4.2577 0.2241 -1.5485
22 1 -0.3633 -1.0277 0.0005
23 1 -0.3633 0.5138 -0.8900
24 1 -0.3634 0.5139 0.8900
25 1 1.9026 -0.5283 4.4376
26 1 1.1574 -2.8332 -3.2553
27 1 2.3727 -3.7443 -2.3308
28 1 4.6984 -0.7551 -1.3616
29 1 4.8820 0.7749 -2.2520
30 1 4.1905 0.7772 -0.6116
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261066690.mol2 30
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:30:42
Heat of formation + Delta-G solvation = -112.499860 kcal
Electronic energy + Delta-G solvation = -16695.079981 eV
Core-core repulsion = 13876.966225 eV
Total energy + Delta-G solvation = -2818.113756 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 227.099 amu
Computer time = 0.22 seconds
Orbital eigenvalues (eV)
-42.39429 -40.35266 -38.21879 -37.37352 -35.11189 -33.08324 -31.26040 -29.15302
-27.20824 -25.90380 -24.34562 -22.41702 -20.03848 -19.38548 -18.70398 -18.05783
-17.51012 -17.12311 -16.65180 -16.09927 -15.45094 -15.24829 -14.83804 -14.75235
-14.16481 -14.03284 -13.95677 -13.66951 -13.37878 -13.01299 -12.77398 -12.54146
-12.12666 -12.08042 -11.63190 -11.53675 -11.30305 -10.73582 -10.41533 -9.67943
-8.24697 -6.27022 0.30999 1.33813 1.36066 1.47186 1.52745 1.67249
2.07412 2.33063 2.80660 3.08915 3.37291 3.85243 3.97032 4.08664
4.24942 4.45773 4.49074 4.64072 4.72599 4.77425 4.83897 5.21513
5.27050 5.46247 5.55147 5.57467 5.95753 6.30172 6.47944 6.74525
7.13733 7.34727 8.92908
Molecular weight = 227.10amu
Principal moments of inertia in cm(-1)
A = 0.037577 B = 0.009967 C = 0.009379
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 744.962698 B = 2808.459816 C = 2984.780051
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.240 3.760
3 H 0.067 0.933
4 C -0.496 4.496
5 H 0.028 0.972
6 C 0.008 3.992
7 N -0.951 5.951
8 Si 0.947 3.053
9 H -0.276 1.276
10 H -0.299 1.299
11 H -0.230 1.230
12 N -0.589 5.589
13 C 0.465 3.535
14 O -0.545 6.545
15 C 0.079 3.921
16 O -0.376 6.376
17 C 0.502 3.498
18 O -0.454 6.454
19 C 0.102 3.898
20 H 0.140 0.860
21 C -0.153 4.153
22 H 0.053 0.947
23 H 0.065 0.935
24 H 0.043 0.957
25 H 0.264 0.736
26 H 0.138 0.862
27 H 0.163 0.837
28 H 0.055 0.945
29 H 0.099 0.901
30 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.142 3.254 -13.487 13.875
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.223 4.223
2 C 0.138 3.862
3 H 0.085 0.915
4 C -0.535 4.535
5 H 0.046 0.954
6 C -0.189 4.189
7 N -0.592 5.592
8 Si 0.774 3.226
9 H -0.203 1.203
10 H -0.227 1.227
11 H -0.154 1.154
12 N -0.323 5.323
13 C 0.252 3.748
14 O -0.423 6.423
15 C 0.004 3.996
16 O -0.297 6.297
17 C 0.342 3.658
18 O -0.333 6.333
19 C -0.003 4.003
20 H 0.158 0.842
21 C -0.211 4.211
22 H 0.072 0.928
23 H 0.084 0.916
24 H 0.062 0.938
25 H 0.073 0.927
26 H 0.155 0.845
27 H 0.180 0.820
28 H 0.074 0.926
29 H 0.118 0.882
30 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -0.055 3.127 -13.506 13.863
hybrid contribution -0.391 0.210 1.003 1.097
sum -0.446 3.338 -12.503 12.949
Atomic orbital electron populations
1.22422 0.97715 1.02034 1.00174 1.19149 0.91373 0.93349 0.82366
0.91516 1.21176 1.30385 1.11714 0.90192 0.95367 1.25784 0.97474
1.00375 0.95270 1.70050 1.48014 1.42607 0.98546 0.85902 0.78692
0.79898 0.78130 1.20268 1.22684 1.15352 1.47853 1.49784 1.11051
1.23620 1.21221 0.81104 0.82594 0.89890 1.90822 1.41383 1.67235
1.42811 1.23750 0.90858 0.96592 0.88389 1.86716 1.47090 1.20609
1.75259 1.23261 0.70241 0.82473 0.89856 1.90640 1.39760 1.70251
1.32651 1.22056 0.95326 0.97309 0.85608 0.84221 1.22087 0.92853
1.03486 1.02690 0.92774 0.91590 0.93826 0.92724 0.84456 0.81971
0.92570 0.88236 0.90473
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -6.77 8.58 71.98 0.62 -6.15 16
2 C 0.24 10.27 1.94 44.24 0.09 10.35 16
3 H 0.07 2.62 6.90 -2.39 -0.02 2.60 16
4 C -0.50 -27.40 7.95 25.60 0.20 -27.20 16
5 H 0.03 1.81 7.52 -2.91 -0.02 1.78 16
6 C 0.01 0.43 5.45 84.65 0.46 0.89 16
7 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16
8 Si 0.95 42.89 24.37 68.60 1.67 44.57 16
9 H -0.28 -12.35 6.87 99.48 0.68 -11.67 16
10 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16
11 H -0.23 -8.94 6.53 99.48 0.65 -8.29 16
12 N -0.59 -21.28 2.45 -784.27 -1.92 -23.20 16
13 C 0.46 17.08 6.89 87.68 0.60 17.69 16
14 O -0.54 -25.54 13.55 -3.03 -0.04 -25.59 16
15 C 0.08 1.98 7.19 71.09 0.51 2.49 16
16 O -0.38 -10.11 10.72 -62.08 -0.67 -10.77 16
17 C 0.50 13.81 6.85 71.39 0.49 14.30 16
18 O -0.45 -13.71 17.96 21.81 0.39 -13.32 16
19 C 0.10 2.82 3.20 44.45 0.14 2.96 16
20 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16
21 C -0.15 -4.02 9.36 71.98 0.67 -3.35 16
22 H 0.05 2.45 6.18 -2.39 -0.01 2.43 16
23 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16
24 H 0.04 1.83 3.27 -2.38 -0.01 1.82 16
25 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16
26 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16
27 H 0.16 3.38 8.14 -2.39 -0.02 3.36 16
28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16
29 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16
30 H 0.08 2.24 7.97 -2.39 -0.02 2.23 16
Total: -1.00 -72.67 249.89 4.60 -68.07
By element:
Atomic # 1 Polarization: 6.46 SS G_CDS: 1.07 Total: 7.53 kcal
Atomic # 6 Polarization: 8.19 SS G_CDS: 3.79 Total: 11.98 kcal
Atomic # 7 Polarization: -80.84 SS G_CDS: -1.62 Total: -82.46 kcal
Atomic # 8 Polarization: -49.37 SS G_CDS: -0.31 Total: -49.68 kcal
Atomic # 14 Polarization: 42.89 SS G_CDS: 1.67 Total: 44.57 kcal
Total: -72.67 4.60 -68.07 kcal
The number of atoms in the molecule is 30
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261066690.mol2 30
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.432 kcal
(2) G-P(sol) polarization free energy of solvation -72.668 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.099 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.068 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.500 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.22 seconds