Wall clock time and date at job start Mon Mar 30 2020 03:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 5 5 H 1.08003 * 120.00271 * 120.00264 * 4 2 1 6 6 C 1.37879 * 120.00161 * 299.99763 * 4 2 1 7 7 N 1.31516 * 120.00079 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99984 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99475 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99550 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99718 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.33696 * 118.62524 * 299.73582 * 12 2 1 14 14 O 1.21280 * 118.37762 * 355.34635 * 13 12 2 15 15 C 1.50249 * 123.21003 * 175.07237 * 13 12 2 16 16 O 1.45471 * 109.91275 * 17.53533 * 15 13 12 17 17 C 1.35270 * 114.66311 * 316.82687 * 16 15 13 18 18 O 1.20826 * 121.43938 * 238.58044 * 17 16 15 19 19 C 1.46233 * 118.62559 * 119.99759 * 12 2 1 20 20 H 1.08997 * 109.53246 * 314.07321 * 19 12 2 21 21 C 1.53004 * 109.52894 * 74.29500 * 19 12 2 22 22 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 24 24 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 25 25 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 26 26 H 1.08997 * 109.58965 * 257.29478 * 15 13 12 27 27 H 1.09002 * 109.24074 * 137.56348 * 15 13 12 28 28 H 1.08990 * 109.47068 * 59.99687 * 21 19 12 29 29 H 1.08998 * 109.46804 * 179.97438 * 21 19 12 30 30 H 1.08998 * 109.46915 * 299.99267 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8728 2.6997 10 1 0.9759 1.9952 3.9068 11 1 0.8471 2.1766 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 1.6832 -1.9721 -1.3776 14 8 1.0600 -2.5344 -0.5022 15 6 2.0355 -2.7476 -2.6153 16 8 3.0972 -2.0673 -3.3407 17 6 2.9476 -0.7261 -3.4337 18 8 2.8893 -0.1713 -4.5055 19 6 2.8570 0.0488 -2.1387 20 1 2.4156 1.0270 -2.3294 21 6 4.2577 0.2241 -1.5485 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 0.5139 0.8900 25 1 1.9026 -0.5283 4.4376 26 1 1.1574 -2.8332 -3.2553 27 1 2.3727 -3.7443 -2.3308 28 1 4.6984 -0.7551 -1.3616 29 1 4.8820 0.7749 -2.2520 30 1 4.1905 0.7772 -0.6116 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261066690.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:42 Heat of formation + Delta-G solvation = -112.499860 kcal Electronic energy + Delta-G solvation = -16695.079981 eV Core-core repulsion = 13876.966225 eV Total energy + Delta-G solvation = -2818.113756 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.39429 -40.35266 -38.21879 -37.37352 -35.11189 -33.08324 -31.26040 -29.15302 -27.20824 -25.90380 -24.34562 -22.41702 -20.03848 -19.38548 -18.70398 -18.05783 -17.51012 -17.12311 -16.65180 -16.09927 -15.45094 -15.24829 -14.83804 -14.75235 -14.16481 -14.03284 -13.95677 -13.66951 -13.37878 -13.01299 -12.77398 -12.54146 -12.12666 -12.08042 -11.63190 -11.53675 -11.30305 -10.73582 -10.41533 -9.67943 -8.24697 -6.27022 0.30999 1.33813 1.36066 1.47186 1.52745 1.67249 2.07412 2.33063 2.80660 3.08915 3.37291 3.85243 3.97032 4.08664 4.24942 4.45773 4.49074 4.64072 4.72599 4.77425 4.83897 5.21513 5.27050 5.46247 5.55147 5.57467 5.95753 6.30172 6.47944 6.74525 7.13733 7.34727 8.92908 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.037577 B = 0.009967 C = 0.009379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.962698 B = 2808.459816 C = 2984.780051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.240 3.760 3 H 0.067 0.933 4 C -0.496 4.496 5 H 0.028 0.972 6 C 0.008 3.992 7 N -0.951 5.951 8 Si 0.947 3.053 9 H -0.276 1.276 10 H -0.299 1.299 11 H -0.230 1.230 12 N -0.589 5.589 13 C 0.465 3.535 14 O -0.545 6.545 15 C 0.079 3.921 16 O -0.376 6.376 17 C 0.502 3.498 18 O -0.454 6.454 19 C 0.102 3.898 20 H 0.140 0.860 21 C -0.153 4.153 22 H 0.053 0.947 23 H 0.065 0.935 24 H 0.043 0.957 25 H 0.264 0.736 26 H 0.138 0.862 27 H 0.163 0.837 28 H 0.055 0.945 29 H 0.099 0.901 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.142 3.254 -13.487 13.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.138 3.862 3 H 0.085 0.915 4 C -0.535 4.535 5 H 0.046 0.954 6 C -0.189 4.189 7 N -0.592 5.592 8 Si 0.774 3.226 9 H -0.203 1.203 10 H -0.227 1.227 11 H -0.154 1.154 12 N -0.323 5.323 13 C 0.252 3.748 14 O -0.423 6.423 15 C 0.004 3.996 16 O -0.297 6.297 17 C 0.342 3.658 18 O -0.333 6.333 19 C -0.003 4.003 20 H 0.158 0.842 21 C -0.211 4.211 22 H 0.072 0.928 23 H 0.084 0.916 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.155 0.845 27 H 0.180 0.820 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.055 3.127 -13.506 13.863 hybrid contribution -0.391 0.210 1.003 1.097 sum -0.446 3.338 -12.503 12.949 Atomic orbital electron populations 1.22422 0.97715 1.02034 1.00174 1.19149 0.91373 0.93349 0.82366 0.91516 1.21176 1.30385 1.11714 0.90192 0.95367 1.25784 0.97474 1.00375 0.95270 1.70050 1.48014 1.42607 0.98546 0.85902 0.78692 0.79898 0.78130 1.20268 1.22684 1.15352 1.47853 1.49784 1.11051 1.23620 1.21221 0.81104 0.82594 0.89890 1.90822 1.41383 1.67235 1.42811 1.23750 0.90858 0.96592 0.88389 1.86716 1.47090 1.20609 1.75259 1.23261 0.70241 0.82473 0.89856 1.90640 1.39760 1.70251 1.32651 1.22056 0.95326 0.97309 0.85608 0.84221 1.22087 0.92853 1.03486 1.02690 0.92774 0.91590 0.93826 0.92724 0.84456 0.81971 0.92570 0.88236 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.77 8.58 71.98 0.62 -6.15 16 2 C 0.24 10.27 1.94 44.24 0.09 10.35 16 3 H 0.07 2.62 6.90 -2.39 -0.02 2.60 16 4 C -0.50 -27.40 7.95 25.60 0.20 -27.20 16 5 H 0.03 1.81 7.52 -2.91 -0.02 1.78 16 6 C 0.01 0.43 5.45 84.65 0.46 0.89 16 7 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 8 Si 0.95 42.89 24.37 68.60 1.67 44.57 16 9 H -0.28 -12.35 6.87 99.48 0.68 -11.67 16 10 H -0.30 -13.62 7.11 99.48 0.71 -12.92 16 11 H -0.23 -8.94 6.53 99.48 0.65 -8.29 16 12 N -0.59 -21.28 2.45 -784.27 -1.92 -23.20 16 13 C 0.46 17.08 6.89 87.68 0.60 17.69 16 14 O -0.54 -25.54 13.55 -3.03 -0.04 -25.59 16 15 C 0.08 1.98 7.19 71.09 0.51 2.49 16 16 O -0.38 -10.11 10.72 -62.08 -0.67 -10.77 16 17 C 0.50 13.81 6.85 71.39 0.49 14.30 16 18 O -0.45 -13.71 17.96 21.81 0.39 -13.32 16 19 C 0.10 2.82 3.20 44.45 0.14 2.96 16 20 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 21 C -0.15 -4.02 9.36 71.98 0.67 -3.35 16 22 H 0.05 2.45 6.18 -2.39 -0.01 2.43 16 23 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 24 H 0.04 1.83 3.27 -2.38 -0.01 1.82 16 25 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 26 H 0.14 2.55 8.14 -2.39 -0.02 2.53 16 27 H 0.16 3.38 8.14 -2.39 -0.02 3.36 16 28 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.24 7.97 -2.39 -0.02 2.23 16 Total: -1.00 -72.67 249.89 4.60 -68.07 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: 1.07 Total: 7.53 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 3.79 Total: 11.98 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.62 Total: -82.46 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.31 Total: -49.68 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.67 Total: 44.57 kcal Total: -72.67 4.60 -68.07 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066690.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.432 kcal (2) G-P(sol) polarization free energy of solvation -72.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds