Wall clock time and date at job start Mon Mar 30 2020 03:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47018 * 2 1 4 4 C 1.50696 * 109.47164 * 120.00464 * 2 1 3 5 5 H 1.08000 * 120.00457 * 119.99764 * 4 2 1 6 6 C 1.37878 * 119.99983 * 299.99195 * 4 2 1 7 7 N 1.31519 * 119.99893 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00291 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47204 * 60.00525 * 8 6 4 10 10 H 1.48500 * 109.47567 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47323 * 300.00469 * 8 6 4 12 12 N 1.46504 * 109.46641 * 239.99947 * 2 1 3 13 13 C 1.33695 * 118.62647 * 299.99789 * 12 2 1 14 14 O 1.21280 * 118.38441 * 4.91504 * 13 12 2 15 15 C 1.50216 * 123.23947 * 184.62790 * 13 12 2 16 16 O 1.45475 * 109.96158 * 342.95377 * 15 13 12 17 17 C 1.35264 * 114.66122 * 42.96625 * 16 15 13 18 18 O 1.20826 * 121.44487 * 121.37734 * 17 16 15 19 19 C 1.46228 * 118.62588 * 119.97968 * 12 2 1 20 20 H 1.09003 * 109.59443 * 45.91588 * 19 12 2 21 21 C 1.53001 * 109.53043 * 285.73415 * 19 12 2 22 22 H 1.08997 * 109.47641 * 59.99852 * 1 2 3 23 23 H 1.08999 * 109.47423 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.46866 * 299.99704 * 1 2 3 25 25 H 0.96994 * 120.00292 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.38328 * 103.10621 * 15 13 12 27 27 H 1.09001 * 109.38815 * 222.89996 * 15 13 12 28 28 H 1.09001 * 109.46951 * 300.36443 * 21 19 12 29 29 H 1.09002 * 109.47260 * 60.37038 * 21 19 12 30 30 H 1.09003 * 109.46751 * 180.36608 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4827 7 7 0.9430 0.8297 2.6034 8 14 2.3226 -1.1196 4.0078 9 1 3.8077 -1.1191 4.0076 10 1 1.8272 -0.4200 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0183 -0.6907 -1.1962 13 6 1.6785 -1.9705 -1.3804 14 8 0.9063 -2.4806 -0.5966 15 6 2.2012 -2.8063 -2.5139 16 8 2.7598 -1.9481 -3.5472 17 6 3.5181 -0.9279 -3.0846 18 8 4.6742 -0.8028 -3.4126 19 6 2.8564 0.0488 -2.1391 20 1 3.6207 0.6018 -1.5929 21 6 1.9900 1.0257 -2.9365 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 0.7084 1.1609 3.4844 26 1 2.9762 -3.4764 -2.1419 27 1 1.3862 -3.3945 -2.9356 28 1 1.2246 0.4720 -3.4802 29 1 1.5135 1.7294 -2.2539 30 1 2.6147 1.5717 -3.6434 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261066693.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:44 Heat of formation + Delta-G solvation = -99.063191 kcal Electronic energy + Delta-G solvation = -16628.247046 eV Core-core repulsion = 13810.715948 eV Total energy + Delta-G solvation = -2817.531098 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.97709 -38.80129 -36.87201 -35.70182 -33.33525 -30.84452 -29.50042 -27.62915 -25.19776 -24.46005 -22.80885 -20.77634 -18.55194 -17.95416 -16.89421 -16.38627 -16.00456 -15.37505 -14.85312 -14.51080 -13.99971 -13.81498 -13.43928 -12.80172 -12.59321 -12.36023 -12.27119 -11.74906 -11.48759 -11.08528 -10.96146 -10.77583 -10.71391 -10.40768 -10.23428 -10.05332 -9.33554 -8.77124 -8.37252 -7.93298 -6.08783 -4.13355 1.59646 2.98281 3.13519 3.30301 3.34186 3.38241 3.56241 4.11061 4.40322 4.71810 5.02960 5.18749 5.24188 5.26466 5.35220 5.71998 5.85793 6.20161 6.59557 6.75841 6.88754 6.95509 7.04564 7.26964 7.61564 7.70930 7.98368 8.01108 8.36474 8.69970 8.87232 9.50900 10.96970 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.033880 B = 0.009413 C = 0.009109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.253547 B = 2973.757565 C = 3073.020894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.270 3.730 3 H 0.047 0.953 4 C -0.509 4.509 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.900 3.100 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.276 1.276 12 N -0.586 5.586 13 C 0.475 3.525 14 O -0.503 6.503 15 C 0.065 3.935 16 O -0.378 6.378 17 C 0.491 3.509 18 O -0.442 6.442 19 C 0.103 3.897 20 H 0.119 0.881 21 C -0.157 4.157 22 H 0.005 0.995 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.263 0.737 26 H 0.102 0.898 27 H 0.138 0.862 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.556 -1.422 -9.395 9.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.171 3.829 3 H 0.065 0.935 4 C -0.547 4.547 5 H 0.074 0.926 6 C -0.137 4.137 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.321 5.321 13 C 0.260 3.740 14 O -0.379 6.379 15 C -0.011 4.011 16 O -0.299 6.299 17 C 0.330 3.670 18 O -0.319 6.319 19 C -0.004 4.004 20 H 0.137 0.863 21 C -0.215 4.215 22 H 0.024 0.976 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.073 0.927 26 H 0.120 0.880 27 H 0.156 0.844 28 H 0.085 0.915 29 H 0.102 0.898 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 1.619 -1.551 -9.179 9.448 hybrid contribution 0.342 -0.388 0.925 1.060 sum 1.961 -1.939 -8.254 8.702 Atomic orbital electron populations 1.22194 0.97336 1.01901 1.00043 1.18986 0.92061 0.92171 0.79680 0.93530 1.21152 1.31269 1.12373 0.89956 0.92572 1.24821 0.95011 0.95030 0.98887 1.69847 1.36639 1.22897 1.23862 0.86526 0.78970 0.79929 0.81824 1.20354 1.21213 1.20147 1.48192 1.49225 1.10616 1.24078 1.20213 0.83444 0.83200 0.87151 1.90763 1.33209 1.69573 1.44314 1.23667 1.00238 0.91545 0.85652 1.86686 1.65073 1.42158 1.36004 1.23463 0.84030 0.81628 0.77920 1.90626 1.14528 1.74082 1.52701 1.21773 0.95192 0.93135 0.90282 0.86346 1.22125 0.99907 0.99033 1.00410 0.97577 0.92236 0.89125 0.92696 0.88045 0.84409 0.91539 0.89843 0.91167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.87 37.16 0.33 -3.42 16 2 C 0.27 6.41 2.35 -69.08 -0.16 6.25 16 3 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 4 C -0.51 -13.71 7.52 -34.44 -0.26 -13.97 16 5 H 0.06 1.56 7.49 -52.49 -0.39 1.17 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -24.67 11.32 55.43 0.63 -24.05 16 8 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 N -0.59 -11.63 2.45 -161.64 -0.40 -12.02 16 13 C 0.48 9.27 6.85 -11.70 -0.08 9.19 16 14 O -0.50 -11.72 13.61 5.56 0.08 -11.65 16 15 C 0.07 0.94 7.19 35.77 0.26 1.19 16 16 O -0.38 -5.78 10.72 -42.02 -0.45 -6.23 16 17 C 0.49 7.99 6.85 36.25 0.25 8.23 16 18 O -0.44 -7.95 17.96 -18.59 -0.33 -8.28 16 19 C 0.10 1.66 3.20 -68.99 -0.22 1.44 16 20 H 0.12 1.89 8.14 -51.93 -0.42 1.47 16 21 C -0.16 -2.11 9.35 37.16 0.35 -1.76 16 22 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 23 H 0.06 1.51 5.82 -51.93 -0.30 1.21 16 24 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 25 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 26 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.14 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.08 1.17 7.98 -51.93 -0.41 0.75 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 256.75 15.07 3.87 3.87 Total: -1.00 -30.52 256.75 -4.77 -35.29 By element: Atomic # 1 Polarization: 1.34 SS G_CDS: -3.50 Total: -2.16 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 0.37 Total: 8.80 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.23 Total: -36.07 kcal Atomic # 8 Polarization: -25.45 SS G_CDS: -0.71 Total: -26.16 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.52 -4.77 -35.29 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066693.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.774 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds