Wall clock time and date at job start Mon Mar 30 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47085 * 2 1 4 4 C 1.50704 * 109.47536 * 240.00431 * 2 1 3 5 5 H 1.07997 * 119.99719 * 240.00358 * 4 2 1 6 6 C 1.37880 * 119.99890 * 59.99304 * 4 2 1 7 7 N 1.31512 * 120.00283 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99900 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46985 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47097 * 119.99879 * 8 6 4 11 11 H 1.48504 * 109.47044 * 240.00292 * 8 6 4 12 12 N 1.46495 * 109.47324 * 120.00050 * 2 1 3 13 13 C 1.33690 * 118.62818 * 60.00314 * 12 2 1 14 14 O 1.21279 * 118.37972 * 4.67696 * 13 12 2 15 15 C 1.50216 * 123.24516 * 184.69534 * 13 12 2 16 16 O 1.45472 * 109.96096 * 342.92751 * 15 13 12 17 17 C 1.35273 * 114.66137 * 42.96198 * 16 15 13 18 18 O 1.20824 * 121.42615 * 121.37599 * 17 16 15 19 19 C 1.46233 * 118.62688 * 240.02077 * 12 2 1 20 20 H 1.09001 * 109.52868 * 45.91050 * 19 12 2 21 21 C 1.52998 * 109.53589 * 285.69244 * 19 12 2 22 22 H 1.08997 * 109.47412 * 299.99909 * 1 2 3 23 23 H 1.08997 * 109.47202 * 59.99916 * 1 2 3 24 24 H 1.09005 * 109.46658 * 179.97438 * 1 2 3 25 25 H 0.96994 * 120.00097 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.38467 * 103.07370 * 15 13 12 27 27 H 1.09000 * 109.39002 * 222.77611 * 15 13 12 28 28 H 1.08997 * 109.47346 * 59.99575 * 21 19 12 29 29 H 1.08997 * 109.47673 * 180.02562 * 21 19 12 30 30 H 1.09006 * 109.46990 * 300.00086 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 3.1467 -2.2867 -3.6039 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1870 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6788 -1.9705 1.3803 14 8 1.0520 -2.5320 0.5070 15 6 2.0348 -2.7473 2.6157 16 8 3.0962 -2.0670 3.3415 17 6 2.9468 -0.7257 3.4341 18 8 2.8872 -0.1710 4.5058 19 6 2.8566 0.0489 2.1389 20 1 2.4150 1.0271 2.3293 21 6 4.2574 0.2245 1.5493 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7094 1.1618 -3.4844 26 1 1.1562 -2.8325 3.2552 27 1 2.3719 -3.7442 2.3317 28 1 4.1906 0.7774 0.6123 29 1 4.8815 0.7754 2.2529 30 1 4.6984 -0.7548 1.3626 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261066694.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:46 Heat of formation + Delta-G solvation = -99.172210 kcal Electronic energy + Delta-G solvation = -16645.493685 eV Core-core repulsion = 13827.957860 eV Total energy + Delta-G solvation = -2817.535825 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.97870 -38.80230 -36.87763 -35.68566 -33.31184 -30.88540 -29.41954 -27.56709 -25.29970 -24.42790 -22.77556 -20.75964 -18.51306 -17.95551 -16.96481 -16.26545 -16.00921 -15.51323 -14.88145 -14.37503 -13.96214 -13.78039 -13.43345 -12.69503 -12.62865 -12.37433 -12.23008 -11.68314 -11.46503 -11.08349 -10.95241 -10.76769 -10.71706 -10.39964 -10.21822 -10.03152 -9.32681 -8.80644 -8.38834 -7.92076 -6.06874 -4.09694 1.58299 3.01521 3.08087 3.28680 3.36874 3.41820 3.56888 4.11435 4.42731 4.72495 5.03487 5.21015 5.25898 5.27770 5.35137 5.81692 5.98374 6.40647 6.57583 6.74753 6.84097 6.93209 7.01291 7.25222 7.58329 7.69546 7.99027 8.00881 8.35232 8.70972 8.91703 9.53906 10.99306 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.009326 C = 0.009016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.205012 B = 3001.668161 C = 3104.970710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.268 3.732 3 H 0.048 0.952 4 C -0.497 4.497 5 H 0.061 0.939 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.286 1.286 12 N -0.586 5.586 13 C 0.473 3.527 14 O -0.500 6.500 15 C 0.066 3.934 16 O -0.377 6.377 17 C 0.491 3.509 18 O -0.444 6.444 19 C 0.104 3.896 20 H 0.114 0.886 21 C -0.155 4.155 22 H 0.005 0.995 23 H 0.094 0.906 24 H 0.052 0.948 25 H 0.261 0.739 26 H 0.100 0.900 27 H 0.139 0.861 28 H 0.090 0.910 29 H 0.065 0.935 30 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.478 -2.118 8.259 9.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.169 3.831 3 H 0.066 0.934 4 C -0.536 4.536 5 H 0.079 0.921 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.728 3.272 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.212 1.212 12 N -0.322 5.322 13 C 0.257 3.743 14 O -0.375 6.375 15 C -0.011 4.011 16 O -0.298 6.298 17 C 0.329 3.671 18 O -0.322 6.322 19 C -0.002 4.002 20 H 0.132 0.868 21 C -0.213 4.213 22 H 0.024 0.976 23 H 0.112 0.888 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.118 0.882 27 H 0.156 0.844 28 H 0.108 0.892 29 H 0.084 0.916 30 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.173 -2.129 8.275 9.114 hybrid contribution 0.244 -0.366 -0.893 0.996 sum 3.417 -2.495 7.381 8.508 Atomic orbital electron populations 1.22158 0.97656 1.01362 1.00314 1.19006 0.91682 0.92286 0.80143 0.93428 1.21211 1.30708 1.12074 0.89558 0.92111 1.24843 0.95207 0.95085 0.98939 1.69863 1.37089 1.23079 1.23573 0.86404 0.78560 0.79553 0.82669 1.19850 1.21024 1.21192 1.48213 1.48919 1.10628 1.24450 1.20229 0.82352 0.82940 0.88757 1.90800 1.39275 1.66396 1.41033 1.23660 0.89572 0.97109 0.90730 1.86689 1.46752 1.20817 1.75520 1.23510 0.70721 0.82427 0.90409 1.90621 1.39009 1.70023 1.32562 1.21762 0.95299 0.96776 0.86397 0.86794 1.22092 0.92995 1.03649 1.02555 0.97597 0.88751 0.92949 0.92891 0.88182 0.84368 0.89159 0.91586 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.75 8.87 37.16 0.33 -3.42 16 2 C 0.27 6.31 2.35 -69.08 -0.16 6.15 16 3 H 0.05 1.15 7.84 -51.93 -0.41 0.74 16 4 C -0.50 -13.17 7.38 -34.44 -0.25 -13.42 16 5 H 0.06 1.68 7.29 -52.49 -0.38 1.30 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -24.64 11.32 55.43 0.63 -24.02 16 8 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 N -0.59 -11.57 2.45 -161.65 -0.40 -11.97 16 13 C 0.47 9.17 6.89 -11.70 -0.08 9.09 16 14 O -0.50 -11.66 13.55 5.56 0.08 -11.58 16 15 C 0.07 0.93 7.19 35.77 0.26 1.19 16 16 O -0.38 -5.80 10.72 -42.05 -0.45 -6.25 16 17 C 0.49 7.87 6.85 36.24 0.25 8.12 16 18 O -0.44 -7.80 17.96 -18.59 -0.33 -8.14 16 19 C 0.10 1.68 3.20 -68.99 -0.22 1.46 16 20 H 0.11 1.72 8.14 -51.93 -0.42 1.29 16 21 C -0.15 -2.26 9.36 37.16 0.35 -1.92 16 22 H 0.00 0.11 8.14 -51.93 -0.42 -0.31 16 23 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 24 H 0.05 1.31 6.16 -51.93 -0.32 0.99 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.10 1.20 8.14 -51.93 -0.42 0.77 16 27 H 0.14 1.64 8.14 -51.93 -0.42 1.21 16 28 H 0.09 1.43 7.97 -51.93 -0.41 1.02 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 256.72 15.07 3.87 3.87 Total: -1.00 -30.28 256.72 -4.77 -35.05 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -3.51 Total: -2.12 kcal Atomic # 6 Polarization: 8.41 SS G_CDS: 0.37 Total: 8.78 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.23 Total: -35.99 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.71 Total: -25.97 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.28 -4.77 -35.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066694.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.125 kcal (2) G-P(sol) polarization free energy of solvation -30.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds