Wall clock time and date at job start Mon Mar 30 2020 03:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.47085 * 2 1 4 4 C 1.50704 * 109.47536 * 240.00431 * 2 1 3 5 5 H 1.07997 * 119.99719 * 240.00358 * 4 2 1 6 6 C 1.37880 * 119.99890 * 59.99304 * 4 2 1 7 7 N 1.31512 * 120.00283 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99900 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46985 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47097 * 119.99879 * 8 6 4 11 11 H 1.48504 * 109.47044 * 240.00292 * 8 6 4 12 12 N 1.46495 * 109.47324 * 120.00050 * 2 1 3 13 13 C 1.33690 * 118.62818 * 60.00314 * 12 2 1 14 14 O 1.21279 * 118.37972 * 4.67696 * 13 12 2 15 15 C 1.50216 * 123.24516 * 184.69534 * 13 12 2 16 16 O 1.45472 * 109.96096 * 342.92751 * 15 13 12 17 17 C 1.35273 * 114.66137 * 42.96198 * 16 15 13 18 18 O 1.20824 * 121.42615 * 121.37599 * 17 16 15 19 19 C 1.46233 * 118.62688 * 240.02077 * 12 2 1 20 20 H 1.09001 * 109.52868 * 45.91050 * 19 12 2 21 21 C 1.52998 * 109.53589 * 285.69244 * 19 12 2 22 22 H 1.08997 * 109.47412 * 299.99909 * 1 2 3 23 23 H 1.08997 * 109.47202 * 59.99916 * 1 2 3 24 24 H 1.09005 * 109.46658 * 179.97438 * 1 2 3 25 25 H 0.96994 * 120.00097 * 179.97438 * 7 6 4 26 26 H 1.09000 * 109.38467 * 103.07370 * 15 13 12 27 27 H 1.09000 * 109.39002 * 222.77611 * 15 13 12 28 28 H 1.08997 * 109.47346 * 59.99575 * 21 19 12 29 29 H 1.08997 * 109.47673 * 180.02562 * 21 19 12 30 30 H 1.09006 * 109.46990 * 300.00086 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3215 -1.1201 -4.0080 9 1 3.1467 -2.2867 -3.6039 10 1 1.1662 -1.5866 -4.8161 11 1 3.1467 -0.1870 -4.8165 12 7 2.0183 -0.6906 1.1961 13 6 1.6788 -1.9705 1.3803 14 8 1.0520 -2.5320 0.5070 15 6 2.0348 -2.7473 2.6157 16 8 3.0962 -2.0670 3.3415 17 6 2.9468 -0.7257 3.4341 18 8 2.8872 -0.1710 4.5058 19 6 2.8566 0.0489 2.1389 20 1 2.4150 1.0271 2.3293 21 6 4.2574 0.2245 1.5493 22 1 -0.3634 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 0.7094 1.1618 -3.4844 26 1 1.1562 -2.8325 3.2552 27 1 2.3719 -3.7442 2.3317 28 1 4.1906 0.7774 0.6123 29 1 4.8815 0.7754 2.2529 30 1 4.6984 -0.7548 1.3626 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261066694.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:46 Heat of formation + Delta-G solvation = -118.672205 kcal Electronic energy + Delta-G solvation = -16646.339269 eV Core-core repulsion = 13827.957860 eV Total energy + Delta-G solvation = -2818.381409 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.34898 -40.29110 -38.18797 -37.27338 -35.16728 -32.54926 -30.96792 -28.94821 -27.29624 -25.83679 -24.26444 -22.41189 -19.97056 -19.34507 -18.60248 -17.80220 -17.45991 -16.97119 -16.62427 -15.92591 -15.56563 -15.22440 -14.71999 -14.52707 -14.07437 -13.84942 -13.58833 -13.34729 -13.02753 -12.92301 -12.73083 -12.51534 -12.25947 -12.15573 -12.01986 -11.58787 -11.16537 -10.60363 -10.25984 -9.59384 -8.11448 -6.19294 0.31577 1.38638 1.42385 1.51502 1.58935 1.72395 2.12713 2.45630 2.83755 3.17784 3.41448 3.87421 3.99546 4.11201 4.28050 4.66240 4.74395 4.76253 4.91882 5.09399 5.13881 5.21978 5.50974 5.60660 5.77321 5.95506 5.99574 6.15930 6.60570 6.82986 7.19777 7.47687 8.93217 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.037314 B = 0.009326 C = 0.009016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.205012 B = 3001.668161 C = 3104.970710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.272 3.728 3 H 0.041 0.959 4 C -0.502 4.502 5 H 0.043 0.957 6 C 0.016 3.984 7 N -0.917 5.917 8 Si 0.952 3.048 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.592 5.592 13 C 0.464 3.536 14 O -0.547 6.547 15 C 0.078 3.922 16 O -0.374 6.374 17 C 0.503 3.497 18 O -0.457 6.457 19 C 0.101 3.899 20 H 0.126 0.874 21 C -0.149 4.149 22 H 0.027 0.973 23 H 0.069 0.931 24 H 0.035 0.965 25 H 0.262 0.738 26 H 0.132 0.868 27 H 0.168 0.832 28 H 0.074 0.926 29 H 0.096 0.904 30 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.255 -2.570 9.346 10.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.172 3.828 3 H 0.058 0.942 4 C -0.541 4.541 5 H 0.062 0.938 6 C -0.183 4.183 7 N -0.557 5.557 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 N -0.326 5.326 13 C 0.251 3.749 14 O -0.426 6.426 15 C 0.003 3.997 16 O -0.295 6.295 17 C 0.342 3.658 18 O -0.336 6.336 19 C -0.004 4.004 20 H 0.144 0.856 21 C -0.207 4.207 22 H 0.046 0.954 23 H 0.088 0.912 24 H 0.054 0.946 25 H 0.072 0.928 26 H 0.150 0.850 27 H 0.185 0.815 28 H 0.092 0.908 29 H 0.114 0.886 30 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.975 -2.576 9.390 10.518 hybrid contribution 0.004 -0.227 -1.196 1.217 sum 3.980 -2.803 8.195 9.531 Atomic orbital electron populations 1.21966 0.98096 1.00124 1.00123 1.18663 0.91280 0.91912 0.80994 0.94162 1.21341 1.30315 1.11426 0.91022 0.93830 1.25487 0.95636 0.95831 1.01309 1.69950 1.37821 1.23929 1.24043 0.85596 0.77960 0.78607 0.79943 1.20165 1.21228 1.20086 1.48145 1.49322 1.11179 1.23987 1.21159 0.81215 0.82664 0.89902 1.90779 1.41343 1.67341 1.43101 1.23766 0.90704 0.96735 0.88503 1.86707 1.47091 1.20366 1.75320 1.23280 0.70139 0.82571 0.89815 1.90632 1.39849 1.70354 1.32767 1.21969 0.95579 0.96960 0.85887 0.85607 1.22046 0.92512 1.03626 1.02506 0.95446 0.91201 0.94566 0.92837 0.85026 0.81475 0.90752 0.88555 0.91873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.97 8.87 71.98 0.64 -6.34 16 2 C 0.27 12.86 2.35 44.25 0.10 12.97 16 3 H 0.04 1.96 7.84 -2.39 -0.02 1.94 16 4 C -0.50 -26.87 7.38 25.60 0.19 -26.68 16 5 H 0.04 2.44 7.29 -2.91 -0.02 2.42 16 6 C 0.02 0.86 5.30 84.66 0.45 1.31 16 7 N -0.92 -50.87 11.32 21.45 0.24 -50.62 16 8 Si 0.95 44.07 29.54 68.60 2.03 46.10 16 9 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 10 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 N -0.59 -22.79 2.45 -784.33 -1.92 -24.71 16 13 C 0.46 17.40 6.89 87.67 0.60 18.00 16 14 O -0.55 -25.44 13.55 -3.02 -0.04 -25.48 16 15 C 0.08 1.98 7.19 71.08 0.51 2.49 16 16 O -0.37 -10.31 10.72 -62.11 -0.67 -10.97 16 17 C 0.50 14.78 6.85 71.39 0.49 15.26 16 18 O -0.46 -14.82 17.96 21.82 0.39 -14.42 16 19 C 0.10 3.09 3.20 44.45 0.14 3.23 16 20 H 0.13 3.55 8.14 -2.39 -0.02 3.53 16 21 C -0.15 -4.10 9.36 71.98 0.67 -3.42 16 22 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 23 H 0.07 3.71 6.07 -2.39 -0.01 3.70 16 24 H 0.04 1.83 6.16 -2.38 -0.01 1.81 16 25 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 26 H 0.13 2.63 8.14 -2.39 -0.02 2.61 16 27 H 0.17 3.35 8.14 -2.39 -0.02 3.33 16 28 H 0.07 2.30 7.97 -2.39 -0.02 2.29 16 29 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 Total: -1.00 -64.73 256.72 4.98 -59.75 By element: Atomic # 1 Polarization: 2.39 SS G_CDS: 1.15 Total: 3.53 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: 3.80 Total: 16.83 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -1.68 Total: -75.33 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.31 Total: -50.88 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -64.73 4.98 -59.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066694.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.920 kcal (2) G-P(sol) polarization free energy of solvation -64.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds