Wall clock time and date at job start Mon Mar 30 2020 03:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46955 * 2 1 4 4 C 1.50698 * 109.46800 * 240.00144 * 2 1 3 5 5 H 1.08005 * 119.99570 * 239.99484 * 4 2 1 6 6 C 1.37875 * 120.00242 * 60.00377 * 4 2 1 7 7 N 1.31511 * 120.00286 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00091 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47282 * 59.99389 * 8 6 4 10 10 H 1.48493 * 109.47299 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47053 * 299.99983 * 8 6 4 12 12 N 1.46500 * 109.47234 * 119.99964 * 2 1 3 13 13 C 1.33695 * 118.62442 * 59.99717 * 12 2 1 14 14 O 1.21280 * 118.38441 * 355.61008 * 13 12 2 15 15 C 1.50216 * 123.23947 * 175.32294 * 13 12 2 16 16 O 1.45471 * 109.96105 * 17.05489 * 15 13 12 17 17 C 1.35268 * 114.66479 * 317.03590 * 16 15 13 18 18 O 1.20830 * 121.44308 * 238.62858 * 17 16 15 19 19 C 1.46229 * 118.62942 * 239.97880 * 12 2 1 20 20 H 1.09002 * 109.53086 * 314.09465 * 19 12 2 21 21 C 1.53001 * 109.59043 * 74.27318 * 19 12 2 22 22 H 1.09005 * 109.47005 * 300.00288 * 1 2 3 23 23 H 1.08997 * 109.47218 * 59.99995 * 1 2 3 24 24 H 1.08995 * 109.47094 * 179.97438 * 1 2 3 25 25 H 0.96997 * 120.00779 * 180.02562 * 7 6 4 26 26 H 1.09003 * 109.38425 * 137.20570 * 15 13 12 27 27 H 1.09003 * 109.39034 * 257.00366 * 15 13 12 28 28 H 1.09003 * 109.46912 * 179.67050 * 21 19 12 29 29 H 1.08998 * 109.47391 * 299.67219 * 21 19 12 30 30 H 1.08998 * 109.47222 * 59.67294 * 21 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6035 8 14 2.3224 -1.1195 -4.0080 9 1 1.8280 -2.5197 -4.0082 10 1 1.8269 -0.4199 -5.2204 11 1 3.8074 -1.1190 -4.0077 12 7 2.0184 -0.6906 1.1962 13 6 1.6786 -1.9705 1.3804 14 8 0.9139 -2.4833 0.5911 15 6 2.2022 -2.8065 2.5132 16 8 2.7618 -1.9486 3.5463 17 6 3.5196 -0.9283 3.0833 18 8 4.6761 -0.8033 3.4103 19 6 2.8574 0.0486 2.1385 20 1 3.6211 0.6007 1.5908 21 6 1.9931 1.0265 2.9370 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 0.7082 1.1610 -3.4844 26 1 1.3878 -3.3961 2.9343 27 1 2.9782 -3.4753 2.1408 28 1 2.6194 1.5722 3.6428 29 1 1.5161 1.7303 2.2550 30 1 1.2281 0.4737 3.4822 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261066695.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:48 Heat of formation + Delta-G solvation = -118.907442 kcal Electronic energy + Delta-G solvation = -16629.026893 eV Core-core repulsion = 13810.635284 eV Total energy + Delta-G solvation = -2818.391609 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.35673 -40.30290 -38.19508 -37.28670 -35.20100 -32.48723 -31.05787 -28.99369 -27.25640 -25.78475 -24.31184 -22.43930 -20.02326 -19.35545 -18.54351 -17.90817 -17.46547 -16.90346 -16.60031 -16.02904 -15.54884 -15.25989 -14.84836 -14.45718 -14.11550 -13.73905 -13.55977 -13.36435 -13.24524 -12.77254 -12.73985 -12.52850 -12.33439 -12.17124 -11.98334 -11.64837 -11.14430 -10.62623 -10.22987 -9.60447 -8.14650 -6.24920 0.30901 1.38449 1.41439 1.46844 1.56695 1.74954 2.11959 2.43295 2.81754 3.14357 3.40335 3.87102 3.98314 4.11707 4.27952 4.65750 4.71940 4.77546 4.97553 5.09766 5.15618 5.16592 5.49808 5.57044 5.81858 5.93902 6.01160 6.13399 6.60174 6.77819 7.18411 7.43374 8.89231 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.033879 B = 0.009416 C = 0.009109 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.277168 B = 2972.937075 C = 3073.059155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.275 3.725 3 H 0.039 0.961 4 C -0.522 4.522 5 H 0.040 0.960 6 C 0.020 3.980 7 N -0.913 5.913 8 Si 0.952 3.048 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.271 1.271 12 N -0.591 5.591 13 C 0.465 3.535 14 O -0.549 6.549 15 C 0.078 3.922 16 O -0.372 6.372 17 C 0.501 3.499 18 O -0.459 6.459 19 C 0.099 3.901 20 H 0.119 0.881 21 C -0.150 4.150 22 H 0.029 0.971 23 H 0.065 0.935 24 H 0.041 0.959 25 H 0.264 0.736 26 H 0.174 0.826 27 H 0.125 0.875 28 H 0.097 0.903 29 H 0.076 0.924 30 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.077 -1.808 10.510 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.174 3.826 3 H 0.056 0.944 4 C -0.561 4.561 5 H 0.059 0.941 6 C -0.179 4.179 7 N -0.552 5.552 8 Si 0.778 3.222 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.196 1.196 12 N -0.325 5.325 13 C 0.253 3.747 14 O -0.428 6.428 15 C 0.003 3.997 16 O -0.293 6.293 17 C 0.341 3.659 18 O -0.338 6.338 19 C -0.006 4.006 20 H 0.136 0.864 21 C -0.208 4.208 22 H 0.048 0.952 23 H 0.084 0.916 24 H 0.060 0.940 25 H 0.074 0.926 26 H 0.191 0.809 27 H 0.142 0.858 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.163 -1.930 10.323 10.722 hybrid contribution 0.170 -0.266 -1.233 1.272 sum 2.333 -2.196 9.090 9.638 Atomic orbital electron populations 1.21976 0.97621 1.00550 0.99912 1.18635 0.91764 0.91704 0.80483 0.94356 1.21376 1.31154 1.11965 0.91607 0.94127 1.25484 0.95370 0.95763 1.01301 1.69933 1.37235 1.23697 1.24342 0.85707 0.78786 0.78474 0.79223 1.20863 1.20363 1.19594 1.48123 1.49479 1.11272 1.23674 1.21133 0.82562 0.83029 0.88023 1.90745 1.35649 1.70289 1.46067 1.23772 1.01842 0.90246 0.83849 1.86702 1.64716 1.41945 1.35886 1.23311 0.83685 0.81571 0.77356 1.90634 1.15152 1.74407 1.53601 1.21965 0.95214 0.93399 0.90021 0.86374 1.22099 0.99977 0.98351 1.00369 0.95226 0.91638 0.94040 0.92645 0.80868 0.85763 0.88432 0.90466 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.85 8.87 71.98 0.64 -6.21 16 2 C 0.27 13.10 2.36 44.25 0.10 13.20 16 3 H 0.04 1.88 7.84 -2.38 -0.02 1.86 16 4 C -0.52 -28.43 7.51 25.60 0.19 -28.24 16 5 H 0.04 2.28 7.48 -2.91 -0.02 2.26 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -50.82 11.32 21.45 0.24 -50.58 16 8 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 9 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 10 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.59 -22.96 2.45 -784.32 -1.92 -24.88 16 13 C 0.47 17.58 6.86 87.67 0.60 18.18 16 14 O -0.55 -25.51 13.60 -3.03 -0.04 -25.56 16 15 C 0.08 2.01 7.19 71.08 0.51 2.52 16 16 O -0.37 -10.18 10.72 -62.06 -0.67 -10.85 16 17 C 0.50 15.12 6.85 71.39 0.49 15.61 16 18 O -0.46 -15.54 17.96 21.80 0.39 -15.15 16 19 C 0.10 3.06 3.20 44.45 0.14 3.20 16 20 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 21 C -0.15 -3.70 9.36 71.98 0.67 -3.03 16 22 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.06 3.48 6.07 -2.39 -0.01 3.47 16 24 H 0.04 2.12 5.83 -2.39 -0.01 2.11 16 25 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 26 H 0.17 3.29 8.14 -2.39 -0.02 3.27 16 27 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.08 2.03 7.98 -2.39 -0.02 2.01 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -65.44 256.76 4.98 -60.46 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: 1.15 Total: 3.60 kcal Atomic # 6 Polarization: 13.00 SS G_CDS: 3.80 Total: 16.80 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: -1.68 Total: -75.46 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -0.31 Total: -51.55 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -65.44 4.98 -60.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261066695.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.445 kcal (2) G-P(sol) polarization free energy of solvation -65.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds