Wall clock time and date at job start Mon Mar 30 2020 03:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.46909 * 2 1 4 4 C 1.50699 * 109.47463 * 119.99491 * 2 1 3 5 5 H 1.07997 * 119.99982 * 119.99921 * 4 2 1 6 6 C 1.37880 * 120.00158 * 300.00962 * 4 2 1 7 7 N 1.31513 * 119.99858 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 119.99827 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47041 * 90.00525 * 8 6 4 10 10 H 1.48504 * 109.47250 * 210.00469 * 8 6 4 11 11 H 1.48497 * 109.47370 * 330.00276 * 8 6 4 12 12 N 1.46500 * 109.47286 * 239.99956 * 2 1 3 13 13 C 1.46766 * 124.34988 * 119.99902 * 12 2 1 14 14 C 1.54480 * 105.47089 * 196.74972 * 13 12 2 15 15 H 1.09001 * 110.96971 * 92.74179 * 14 13 12 16 16 C 1.50699 * 110.96829 * 216.46309 * 14 13 12 17 17 O 1.20827 * 119.99964 * 0.02562 * 16 14 13 18 18 O 1.34226 * 120.00282 * 180.02562 * 16 14 13 19 19 C 1.54618 * 101.76574 * 334.58387 * 14 13 12 20 20 C 1.34413 * 124.34722 * 299.69694 * 12 2 1 21 21 O 1.21284 * 124.94565 * 359.83615 * 20 12 2 22 22 H 1.09004 * 109.47116 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47795 * 299.99802 * 1 2 3 24 24 H 1.09001 * 109.47654 * 60.00508 * 1 2 3 25 25 H 0.97003 * 119.99677 * 180.02562 * 7 6 4 26 26 H 1.09008 * 110.24439 * 315.74963 * 13 12 2 27 27 H 1.09001 * 110.24269 * 77.74734 * 13 12 2 28 28 H 0.96697 * 117.00500 * 180.02562 * 18 16 14 29 29 H 1.09008 * 110.48943 * 143.47618 * 19 14 13 30 30 H 1.09000 * 110.48637 * 265.98667 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6533 -1.5883 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 2.1381 -0.8589 3.5566 8 14 0.6256 1.2798 2.6541 9 1 -0.8023 0.8742 2.6993 10 1 0.9768 1.9955 3.9070 11 1 0.8487 2.1772 1.4922 12 7 2.0183 -0.6906 -1.1962 13 6 2.8656 -0.0712 -2.2221 14 6 2.7663 -0.9987 -3.4535 15 1 1.9737 -0.6707 -4.1260 16 6 4.0857 -1.0771 -4.1773 17 8 5.0379 -0.4570 -3.7666 18 8 4.2032 -1.8358 -5.2783 19 6 2.4125 -2.3543 -2.7995 20 6 1.7528 -1.9746 -1.4921 21 8 1.0823 -2.7204 -0.8100 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3635 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 1.9033 -0.5277 4.4376 26 1 2.4938 0.9236 -2.4681 27 1 3.8973 -0.0140 -1.8751 28 1 5.0693 -1.8549 -5.7080 29 1 1.7189 -2.9121 -3.4288 30 1 3.3153 -2.9376 -2.6183 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261170426.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:33 Heat of formation + Delta-G solvation = -113.595229 kcal Electronic energy + Delta-G solvation = -16090.604467 eV Core-core repulsion = 13272.443212 eV Total energy + Delta-G solvation = -2818.161255 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81205 -39.33919 -36.37775 -35.61420 -34.39642 -31.87939 -29.49641 -27.49513 -25.11924 -24.22145 -21.83639 -20.65680 -18.64389 -18.07698 -17.24257 -16.70669 -16.15339 -15.59706 -14.94029 -14.43516 -14.37845 -13.36875 -13.18655 -12.99900 -12.88158 -12.74760 -12.21684 -11.74513 -11.56265 -11.49578 -11.30931 -11.14445 -10.70479 -10.67258 -10.22178 -9.61818 -9.44208 -8.85966 -8.58763 -7.79678 -6.07862 -4.07432 2.02684 2.77104 3.25356 3.30473 3.30542 3.36169 3.79727 4.31046 4.35909 4.54322 4.86526 5.08530 5.21989 5.28432 5.64953 5.71706 5.78139 6.03056 6.24635 6.31674 6.32569 6.53859 6.61242 7.11926 7.44202 7.54743 7.72057 8.05072 8.48720 8.94998 8.99958 9.50857 11.05759 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.042455 B = 0.007636 C = 0.007392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.367052 B = 3666.007756 C = 3787.116524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.252 3.748 3 H 0.046 0.954 4 C -0.517 4.517 5 H 0.079 0.921 6 C 0.073 3.927 7 N -0.894 5.894 8 Si 0.886 3.114 9 H -0.277 1.277 10 H -0.295 1.295 11 H -0.267 1.267 12 N -0.596 5.596 13 C 0.114 3.886 14 C -0.098 4.098 15 H 0.126 0.874 16 C 0.493 3.507 17 O -0.506 6.506 18 O -0.514 6.514 19 C -0.143 4.143 20 C 0.515 3.485 21 O -0.512 6.512 22 H 0.069 0.931 23 H 0.049 0.951 24 H 0.030 0.970 25 H 0.265 0.735 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.410 0.590 29 H 0.107 0.893 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.408 1.770 -17.091 17.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.151 3.849 3 H 0.064 0.936 4 C -0.555 4.555 5 H 0.097 0.903 6 C -0.130 4.130 7 N -0.532 5.532 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.222 1.222 11 H -0.193 1.193 12 N -0.330 5.330 13 C -0.010 4.010 14 C -0.118 4.118 15 H 0.144 0.856 16 C 0.335 3.665 17 O -0.393 6.393 18 O -0.326 6.326 19 C -0.184 4.184 20 C 0.300 3.700 21 O -0.387 6.387 22 H 0.088 0.912 23 H 0.068 0.932 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.269 0.731 29 H 0.125 0.875 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.903 1.607 -16.121 16.226 hybrid contribution 0.095 0.825 -0.122 0.840 sum 0.998 2.432 -16.242 16.454 Atomic orbital electron populations 1.22501 0.98689 1.02496 0.98740 1.19152 0.90372 0.92934 0.82410 0.93630 1.21138 1.32283 1.13898 0.88223 0.90307 1.24881 0.95705 0.96757 0.95626 1.69880 1.45326 1.40094 0.97897 0.86902 0.80893 0.83465 0.77121 1.20367 1.22198 1.19255 1.48433 1.49828 1.11777 1.22954 1.21921 0.97676 0.95700 0.85680 1.21909 0.93333 0.99312 0.97218 0.85629 1.23004 0.90511 0.75032 0.77998 1.90753 1.40476 1.42755 1.65332 1.84530 1.41996 1.65273 1.40758 1.22366 1.03403 0.95604 0.96985 1.20293 0.80984 0.82356 0.86339 1.90725 1.39408 1.53895 1.54702 0.91157 0.93235 0.95099 0.92498 0.90016 0.89443 0.73097 0.87454 0.88012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.74 8.68 37.15 0.32 -3.42 16 2 C 0.25 5.96 2.45 -69.09 -0.17 5.79 16 3 H 0.05 1.04 7.12 -51.93 -0.37 0.67 16 4 C -0.52 -14.93 8.63 -34.44 -0.30 -15.23 16 5 H 0.08 2.57 7.92 -52.49 -0.42 2.15 16 6 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 7 N -0.89 -27.89 13.96 55.43 0.77 -27.11 16 8 Si 0.89 21.74 24.37 -169.99 -4.14 17.60 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.30 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 11 H -0.27 -6.08 6.53 56.52 0.37 -5.72 16 12 N -0.60 -12.02 2.82 -166.16 -0.47 -12.49 16 13 C 0.11 1.73 6.66 -3.12 -0.02 1.71 16 14 C -0.10 -1.15 3.66 -90.15 -0.33 -1.48 16 15 H 0.13 1.12 8.14 -51.93 -0.42 0.70 16 16 C 0.49 5.61 7.56 36.01 0.27 5.88 16 17 O -0.51 -7.36 16.26 -18.75 -0.30 -7.66 16 18 O -0.51 -4.25 13.42 -39.25 -0.53 -4.78 16 19 C -0.14 -1.97 6.41 -26.75 -0.17 -2.14 16 20 C 0.52 10.43 7.32 -10.86 -0.08 10.35 16 21 O -0.51 -12.77 15.98 5.55 0.09 -12.68 16 22 H 0.07 1.70 6.81 -51.93 -0.35 1.34 16 23 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 24 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 26 H 0.08 1.06 8.14 -51.92 -0.42 0.64 16 27 H 0.09 1.44 6.96 -51.93 -0.36 1.08 16 28 H 0.41 1.65 9.10 45.56 0.41 2.07 16 29 H 0.11 1.23 8.14 -51.92 -0.42 0.81 16 30 H 0.10 1.36 7.89 -51.93 -0.41 0.95 16 LS Contribution 254.10 15.07 3.83 3.83 Total: -1.00 -35.86 254.10 -3.86 -39.72 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -2.54 Total: 0.08 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -0.57 Total: 3.50 kcal Atomic # 7 Polarization: -39.91 SS G_CDS: 0.30 Total: -39.61 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: -0.74 Total: -25.12 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.14 Total: 17.60 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -35.86 -3.86 -39.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261170426.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.876 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds