Wall clock time and date at job start Mon Mar 30 2020 03:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47515 * 2 1 4 4 N 1.46496 * 109.47329 * 240.00050 * 2 1 3 5 5 C 1.36935 * 120.00105 * 87.12238 * 4 2 1 6 6 H 1.07993 * 120.00120 * 0.02562 * 5 4 2 7 7 C 1.38819 * 120.00162 * 180.02562 * 5 4 2 8 8 N 1.31617 * 120.00061 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99719 * 359.97438 * 7 5 4 10 10 H 1.48509 * 109.46889 * 90.00240 * 9 7 5 11 11 H 1.48503 * 109.47266 * 209.99693 * 9 7 5 12 12 H 1.48499 * 109.47304 * 330.00090 * 9 7 5 13 13 C 1.50704 * 109.47043 * 119.99792 * 2 1 3 14 14 C 1.38206 * 119.99721 * 92.75130 * 13 2 1 15 15 C 1.38429 * 119.99905 * 180.29169 * 14 13 2 16 16 F 1.35099 * 120.00359 * 179.69670 * 15 14 13 17 17 C 1.38472 * 119.99780 * 359.72956 * 15 14 13 18 18 C 1.38161 * 120.00035 * 0.02562 * 17 15 14 19 19 C 1.38420 * 120.00018 * 272.51338 * 13 2 1 20 20 F 1.35103 * 120.00393 * 359.97438 * 19 13 2 21 21 H 1.09003 * 109.46941 * 60.00273 * 1 2 3 22 22 H 1.08999 * 109.47105 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.47319 * 300.00376 * 1 2 3 24 24 H 0.97008 * 120.00417 * 267.11991 * 4 2 1 25 25 H 0.97002 * 120.00111 * 180.02562 * 8 7 5 26 26 H 1.08003 * 120.00031 * 0.02562 * 14 13 2 27 27 H 1.07999 * 119.99910 * 179.97438 * 17 15 14 28 28 H 1.08005 * 119.99926 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1905 0.0025 -2.3645 6 1 1.9666 1.0582 -2.4042 7 6 2.6527 -0.6520 -3.4981 8 7 2.8187 0.0142 -4.6210 9 14 3.0406 -2.4780 -3.4294 10 1 1.8249 -3.2558 -3.7792 11 1 4.1235 -2.7908 -4.3963 12 1 3.4818 -2.8391 -2.0582 13 6 2.0323 -0.7104 1.2305 14 6 2.3168 -2.0619 1.1804 15 6 2.7724 -2.7158 2.3123 16 9 3.0447 -4.0382 2.2650 17 6 2.9485 -2.0144 3.4932 18 6 2.6689 -0.6623 3.5419 19 6 2.2134 -0.0082 2.4096 20 9 1.9404 1.3141 2.4572 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 2.2199 -1.6388 -1.1605 25 1 3.1413 -0.4432 -5.4133 26 1 2.1795 -2.6089 0.2593 27 1 3.3036 -2.5246 4.3764 28 1 2.8059 -0.1154 4.4631 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306450052.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:09:34 Heat of formation + Delta-G solvation = -52.030863 kcal Electronic energy + Delta-G solvation = -15409.751796 eV Core-core repulsion = 12483.172657 eV Total energy + Delta-G solvation = -2926.579139 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.86478 -48.77325 -39.04660 -35.73351 -32.40837 -30.46331 -30.03824 -28.53213 -24.28919 -23.47348 -22.15409 -20.24009 -18.40589 -17.31668 -17.01320 -16.74879 -15.78025 -15.23526 -14.69072 -14.37511 -14.27821 -14.18758 -13.51117 -13.02185 -12.86112 -12.46861 -12.34629 -12.03726 -11.58992 -11.38357 -10.97731 -10.87737 -10.45679 -10.16040 -9.63626 -9.16707 -8.94076 -8.42285 -7.39566 -5.83143 -3.20496 1.01375 1.10357 3.32306 3.34455 3.41103 3.43504 4.20256 4.26539 4.52797 4.62840 4.73909 4.97240 5.18930 5.36171 5.47276 5.65600 5.92044 5.96248 6.04976 6.08834 6.10647 6.17473 6.37988 6.66057 6.79906 6.90173 7.90470 8.34636 9.10633 9.83032 10.00997 11.34721 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.026469 B = 0.009667 C = 0.007626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.603023 B = 2895.827819 C = 3670.747676 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.212 3.788 3 H 0.076 0.924 4 N -0.745 5.745 5 C -0.248 4.248 6 H 0.094 0.906 7 C 0.009 3.991 8 N -0.930 5.930 9 Si 0.879 3.121 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.277 1.277 13 C -0.073 4.073 14 C -0.120 4.120 15 C 0.089 3.911 16 F -0.139 7.139 17 C -0.139 4.139 18 C -0.125 4.125 19 C 0.090 3.910 20 F -0.132 7.132 21 H 0.067 0.933 22 H 0.049 0.951 23 H 0.044 0.956 24 H 0.361 0.639 25 H 0.261 0.739 26 H 0.144 0.856 27 H 0.141 0.859 28 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.520 -3.567 16.683 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.102 3.898 3 H 0.094 0.906 4 N -0.390 5.390 5 C -0.377 4.377 6 H 0.111 0.889 7 C -0.187 4.187 8 N -0.577 5.577 9 Si 0.709 3.291 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.204 1.204 13 C -0.076 4.076 14 C -0.139 4.139 15 C 0.070 3.930 16 F -0.117 7.117 17 C -0.158 4.158 18 C -0.144 4.144 19 C 0.070 3.930 20 F -0.111 7.111 21 H 0.087 0.913 22 H 0.068 0.932 23 H 0.063 0.937 24 H 0.196 0.804 25 H 0.071 0.929 26 H 0.161 0.839 27 H 0.159 0.841 28 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.494 -3.382 16.463 16.873 hybrid contribution 0.381 -1.389 -0.112 1.445 sum -1.113 -4.771 16.352 17.070 Atomic orbital electron populations 1.22368 0.96929 1.01405 1.01228 1.19142 0.92743 0.95521 0.82369 0.90597 1.42889 1.80214 1.08240 1.07630 1.19060 1.37717 0.95041 0.85902 0.88859 1.24645 1.01063 0.97389 0.95594 1.69689 1.51948 1.35215 1.00833 0.86653 0.78258 0.87016 0.77213 1.20804 1.21426 1.20370 1.20453 0.97795 0.93600 0.95702 1.20910 1.00417 0.94429 0.98132 1.17673 1.02150 0.78165 0.95032 1.91498 1.91577 1.31550 1.97103 1.20852 1.03440 0.94111 0.97382 1.20899 1.01175 0.94367 0.97996 1.17480 1.02695 0.78352 0.94457 1.91500 1.91470 1.31187 1.96930 0.91349 0.93225 0.93726 0.80385 0.92903 0.83887 0.84119 0.83953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.77 9.49 37.16 0.35 -2.42 15 2 C 0.21 4.12 2.91 -69.08 -0.20 3.92 15 3 H 0.08 1.55 7.63 -51.93 -0.40 1.15 15 4 N -0.75 -17.44 4.83 -54.55 -0.26 -17.70 15 5 C -0.25 -6.89 10.42 -15.06 -0.16 -7.04 15 6 H 0.09 2.76 8.06 -52.49 -0.42 2.34 15 7 C 0.01 0.27 5.50 -17.43 -0.10 0.18 15 8 N -0.93 -28.90 13.97 55.49 0.78 -28.12 15 9 Si 0.88 21.85 27.73 -169.99 -4.71 17.14 15 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 15 12 H -0.28 -6.49 6.52 56.52 0.37 -6.12 15 13 C -0.07 -1.24 5.05 -104.56 -0.53 -1.77 15 14 C -0.12 -1.96 9.20 -39.52 -0.36 -2.33 15 15 C 0.09 1.28 7.30 -39.42 -0.29 1.00 15 16 F -0.14 -2.03 17.27 2.25 0.04 -2.00 15 17 C -0.14 -1.64 10.02 -39.52 -0.40 -2.03 15 18 C -0.13 -1.49 10.02 -39.52 -0.40 -1.88 15 19 C 0.09 1.33 7.24 -39.43 -0.29 1.05 15 20 F -0.13 -2.01 16.52 2.25 0.04 -1.97 15 21 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 22 H 0.05 0.83 8.14 -51.93 -0.42 0.41 15 23 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 24 H 0.36 8.23 3.37 -40.82 -0.14 8.10 15 25 H 0.26 7.72 8.31 -40.82 -0.34 7.38 15 26 H 0.14 2.47 6.17 -52.48 -0.32 2.15 15 27 H 0.14 1.24 8.06 -52.49 -0.42 0.82 15 28 H 0.14 1.26 8.06 -52.48 -0.42 0.83 15 LS Contribution 252.29 15.07 3.80 3.80 Total: -1.00 -30.18 252.29 -5.25 -35.42 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -2.56 Total: 4.77 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -2.36 Total: -11.34 kcal Atomic # 7 Polarization: -46.33 SS G_CDS: 0.51 Total: -45.82 kcal Atomic # 9 Polarization: -4.04 SS G_CDS: 0.08 Total: -3.97 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.14 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.18 -5.25 -35.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306450052.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.610 kcal (2) G-P(sol) polarization free energy of solvation -30.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds