Wall clock time and date at job start Mon Mar 30 2020 02:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48500 * 109.46986 * 270.00107 * 3 2 1 5 5 H 1.48496 * 109.47029 * 30.00124 * 3 2 1 6 6 H 1.48499 * 109.47352 * 149.99954 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99806 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99686 * 179.72339 * 7 2 1 10 10 C 1.50698 * 109.46993 * 179.97438 * 9 7 2 11 11 C 1.38126 * 120.03992 * 265.00526 * 10 9 7 12 12 C 1.38268 * 120.07598 * 179.97438 * 11 10 9 13 13 C 1.50703 * 119.92618 * 179.97438 * 12 11 10 14 14 F 1.39898 * 109.46472 * 299.99688 * 13 12 11 15 15 F 1.39895 * 109.47048 * 59.99507 * 13 12 11 16 16 C 1.38308 * 120.14699 * 359.94925 * 12 11 10 17 17 C 1.38078 * 120.07649 * 0.02935 * 16 12 11 18 18 C 1.38893 * 120.03718 * 84.72253 * 10 9 7 19 19 N 1.39667 * 120.07473 * 0.02591 * 18 10 9 20 20 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 21 21 H 1.08998 * 109.47683 * 300.00180 * 9 7 2 22 22 H 1.09001 * 109.47048 * 60.00389 * 9 7 2 23 23 H 1.07997 * 119.96565 * 359.96896 * 11 10 9 24 24 H 1.08993 * 109.46764 * 180.02562 * 13 12 11 25 25 H 1.08001 * 119.95990 * 180.02562 * 16 12 11 26 26 H 1.08009 * 120.03623 * 179.97438 * 17 16 12 27 27 H 0.97007 * 120.00216 * 0.02562 * 19 18 10 28 28 H 0.97002 * 120.00753 * 179.97438 * 19 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 -0.0058 10 6 4.0139 -2.6148 -0.0032 11 6 4.3476 -3.2281 1.1887 12 6 4.8081 -4.5318 1.1920 13 6 5.1717 -5.1974 2.4942 14 9 6.1949 -4.4749 3.1173 15 9 4.0499 -5.2320 3.3294 16 6 4.9353 -5.2266 0.0028 17 6 4.6031 -4.6197 -1.1921 18 6 4.1364 -3.3111 -1.1987 19 7 3.7949 -2.6959 -2.4051 20 1 -0.4850 0.8401 0.0004 21 1 3.8712 -0.6827 -0.8987 22 1 3.8785 -0.6777 0.8813 23 1 4.2487 -2.6887 2.1191 24 1 5.5120 -6.2144 2.2997 25 1 5.2949 -6.2449 0.0090 26 1 4.7031 -5.1627 -2.1204 27 1 3.4720 -1.7811 -2.4088 28 1 3.8812 -3.1830 -3.2396 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306599873.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:29 Heat of formation + Delta-G solvation = -109.875782 kcal Electronic energy + Delta-G solvation = -15237.732614 eV Core-core repulsion = 12308.645131 eV Total energy + Delta-G solvation = -2929.087483 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.79409 -47.80925 -40.43589 -35.90785 -35.10369 -33.23120 -30.78064 -29.53102 -26.06242 -24.95817 -22.93613 -21.43285 -18.97587 -18.47131 -18.05337 -18.02755 -17.56151 -17.29439 -16.31481 -15.20830 -14.92992 -14.78472 -14.65416 -14.34984 -14.25266 -14.21182 -13.78456 -13.52387 -13.12135 -12.75565 -12.46228 -11.99792 -11.72528 -11.66794 -11.52059 -11.40992 -10.79512 -9.56884 -8.34771 -8.28561 -6.35042 0.56371 0.62694 1.32805 1.37259 1.48284 2.33292 2.89529 3.01815 3.05062 3.18624 3.47503 3.80556 4.12285 4.21981 4.28451 4.50090 4.72422 4.82834 4.94423 5.12757 5.21008 5.43004 5.55844 5.58016 5.78166 6.03193 6.27123 6.64615 6.72085 7.10966 7.28463 8.86147 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.027786 B = 0.008281 C = 0.007218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.464033 B = 3380.252626 C = 3878.146401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.947 3.053 4 H -0.257 1.257 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.511 4.511 8 H 0.025 0.975 9 C 0.032 3.968 10 C -0.154 4.154 11 C -0.061 4.061 12 C -0.248 4.248 13 C 0.317 3.683 14 F -0.218 7.218 15 F -0.222 7.222 16 C -0.042 4.042 17 C -0.207 4.207 18 C 0.227 3.773 19 N -0.862 5.862 20 H 0.267 0.733 21 H 0.031 0.969 22 H 0.019 0.981 23 H 0.099 0.901 24 H 0.165 0.835 25 H 0.170 0.830 26 H 0.155 0.845 27 H 0.401 0.599 28 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.133 -10.197 -2.373 16.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.187 4.187 3 Si 0.770 3.230 4 H -0.182 1.182 5 H -0.212 1.212 6 H -0.178 1.178 7 C -0.549 4.549 8 H 0.043 0.957 9 C -0.005 4.005 10 C -0.159 4.159 11 C -0.080 4.080 12 C -0.251 4.251 13 C 0.264 3.736 14 F -0.200 7.200 15 F -0.204 7.204 16 C -0.061 4.061 17 C -0.230 4.230 18 C 0.120 3.880 19 N -0.400 5.400 20 H 0.076 0.924 21 H 0.049 0.951 22 H 0.037 0.963 23 H 0.117 0.883 24 H 0.182 0.818 25 H 0.187 0.813 26 H 0.172 0.828 27 H 0.230 0.770 28 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 12.983 -10.073 -2.337 16.598 hybrid contribution -0.604 1.385 0.069 1.512 sum 12.379 -8.688 -2.268 15.293 Atomic orbital electron populations 1.70062 1.08263 1.28145 1.52349 1.25944 0.95512 1.03135 0.94124 0.85706 0.79214 0.78441 0.79607 1.18187 1.21180 1.17751 1.21109 0.90668 0.92660 1.50485 0.95700 1.18405 0.94222 0.90929 0.96936 1.19634 1.05361 0.98261 0.92615 1.20600 0.95846 0.94750 0.96800 1.20210 1.12957 0.96177 0.95806 1.20787 0.73561 0.97365 0.81894 1.92951 1.60451 1.81828 1.84733 1.92963 1.55100 1.97567 1.74764 1.20935 0.95383 1.00104 0.89656 1.20838 1.08775 0.93307 1.00032 1.17984 0.91282 0.92380 0.86398 1.42593 1.73920 1.18086 1.05436 0.92437 0.95094 0.96311 0.88255 0.81783 0.81293 0.82774 0.76989 0.76241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.23 13.96 21.45 0.30 -58.93 15 2 C 0.01 0.58 5.47 84.66 0.46 1.04 15 3 Si 0.95 43.72 27.47 68.60 1.88 45.61 15 4 H -0.26 -11.03 7.11 99.48 0.71 -10.33 15 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 15 6 H -0.25 -11.16 6.54 99.48 0.65 -10.51 15 7 C -0.51 -29.44 9.65 25.60 0.25 -29.19 15 8 H 0.02 1.62 7.98 -2.92 -0.02 1.60 15 9 C 0.03 1.55 3.60 29.10 0.10 1.66 15 10 C -0.15 -6.55 5.09 -19.73 -0.10 -6.65 15 11 C -0.06 -2.45 9.22 22.25 0.21 -2.24 15 12 C -0.25 -7.82 5.37 -19.84 -0.11 -7.93 15 13 C 0.32 8.36 5.45 71.24 0.39 8.75 15 14 F -0.22 -6.51 17.25 44.97 0.78 -5.74 15 15 F -0.22 -7.22 17.25 44.97 0.78 -6.44 15 16 C -0.04 -1.06 9.66 22.25 0.21 -0.85 15 17 C -0.21 -5.66 9.90 22.40 0.22 -5.44 15 18 C 0.23 8.03 6.73 38.22 0.26 8.28 15 19 N -0.86 -26.86 8.99 -51.37 -0.46 -27.32 15 20 H 0.27 15.53 8.31 -92.71 -0.77 14.76 15 21 H 0.03 1.38 6.27 -2.39 -0.01 1.36 15 22 H 0.02 0.91 7.10 -2.39 -0.02 0.89 15 23 H 0.10 4.24 8.06 -2.91 -0.02 4.21 15 24 H 0.17 2.49 7.87 -2.39 -0.02 2.47 15 25 H 0.17 2.49 7.94 -2.91 -0.02 2.47 15 26 H 0.15 3.06 8.06 -2.91 -0.02 3.03 15 27 H 0.40 13.92 6.94 -92.70 -0.64 13.28 15 28 H 0.41 9.37 8.84 -92.71 -0.82 8.55 15 Total: -1.00 -70.88 253.19 4.86 -66.02 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -0.31 Total: 19.38 kcal Atomic # 6 Polarization: -34.47 SS G_CDS: 1.90 Total: -32.57 kcal Atomic # 7 Polarization: -86.10 SS G_CDS: -0.16 Total: -86.26 kcal Atomic # 9 Polarization: -13.73 SS G_CDS: 1.55 Total: -12.17 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 1.88 Total: 45.61 kcal Total: -70.88 4.86 -66.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306599873.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.855 kcal (2) G-P(sol) polarization free energy of solvation -70.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds