Wall clock time and date at job start Mon Mar 30 2020 02:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00370 * 2 1 4 4 H 1.48501 * 109.47502 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46863 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.46846 * 59.99407 * 3 2 1 7 7 C 1.37884 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.38129 * 119.96008 * 265.25014 * 10 9 7 12 12 C 1.38888 * 119.91950 * 180.29338 * 11 10 9 13 13 N 1.39675 * 120.07517 * 179.70832 * 12 11 10 14 14 C 1.38939 * 119.85344 * 359.73004 * 12 11 10 15 15 C 1.38081 * 119.92438 * 359.97438 * 14 12 11 16 16 C 1.38262 * 119.96364 * 85.00065 * 10 9 7 17 17 C 1.50703 * 119.92356 * 359.97438 * 16 10 9 18 18 F 1.39904 * 109.46969 * 59.72548 * 17 16 10 19 19 F 1.39901 * 109.47086 * 299.72951 * 17 16 10 20 20 H 0.97009 * 119.99924 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.46988 * 59.99564 * 9 7 2 22 22 H 1.08999 * 109.46923 * 300.00099 * 9 7 2 23 23 H 1.07996 * 120.04264 * 0.02562 * 11 10 9 24 24 H 0.97000 * 120.00325 * 180.02562 * 13 12 11 25 25 H 0.96997 * 120.00006 * 0.02562 * 13 12 11 26 26 H 1.08001 * 120.03572 * 179.97438 * 14 12 11 27 27 H 1.07998 * 119.96422 * 179.97438 * 15 14 12 28 28 H 1.09002 * 109.47152 * 179.72619 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6032 -4.2333 -1.1921 12 6 3.5011 -5.2929 -1.1906 13 7 3.8757 -5.8946 -2.3941 14 6 4.0254 -5.7534 0.0108 15 6 3.6530 -5.1563 1.1988 16 6 2.7583 -4.1017 1.1938 17 6 2.3538 -3.4528 2.4924 18 9 0.9700 -3.5706 2.6614 19 9 2.7068 -2.0993 2.4673 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.1937 -3.8730 -2.1242 24 1 4.5026 -6.6348 -2.3919 25 1 3.5090 -5.5722 -3.2323 26 1 4.7236 -6.5774 0.0154 27 1 4.0599 -5.5140 2.1331 28 1 2.8642 -3.9462 3.3196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307022450.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:00 Heat of formation + Delta-G solvation = -85.549091 kcal Electronic energy + Delta-G solvation = -15691.693174 eV Core-core repulsion = 12763.660575 eV Total energy + Delta-G solvation = -2928.032598 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.96536 -45.88591 -38.92596 -34.71419 -33.06473 -31.11999 -29.41040 -27.25212 -24.47096 -23.22625 -21.55971 -20.04082 -17.05186 -16.54719 -16.26724 -16.12185 -15.93738 -15.86126 -14.39264 -13.77647 -13.41907 -13.02447 -12.89590 -12.63986 -12.34446 -12.23520 -11.89893 -11.49946 -11.12350 -11.00441 -10.62007 -10.42552 -10.20399 -9.86481 -9.45798 -9.26792 -8.28076 -7.99235 -7.20491 -5.90818 -3.90812 1.93700 2.09255 3.38318 3.45357 3.51149 4.10348 4.32766 4.58813 4.64034 4.94699 5.37131 5.43286 5.47350 5.60053 5.95003 6.01306 6.15469 6.26362 6.66868 6.75219 6.85597 7.11291 7.33744 7.66052 7.80599 7.89484 7.98316 8.04995 8.41763 9.10753 9.69995 11.20235 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.026438 B = 0.010241 C = 0.008530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.837822 B = 2733.530308 C = 3281.731515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.284 1.284 7 C -0.490 4.490 8 H 0.057 0.943 9 C 0.030 3.970 10 C 0.050 3.950 11 C -0.205 4.205 12 C 0.227 3.773 13 N -0.882 5.882 14 C -0.229 4.229 15 C -0.044 4.044 16 C -0.233 4.233 17 C 0.325 3.675 18 F -0.204 7.204 19 F -0.181 7.181 20 H 0.259 0.741 21 H 0.028 0.972 22 H 0.048 0.952 23 H 0.120 0.880 24 H 0.393 0.607 25 H 0.396 0.604 26 H 0.114 0.886 27 H 0.117 0.883 28 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.116 -11.209 0.385 13.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.142 4.142 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.210 1.210 7 C -0.529 4.529 8 H 0.075 0.925 9 C -0.006 4.006 10 C 0.049 3.951 11 C -0.227 4.227 12 C 0.123 3.877 13 N -0.421 5.421 14 C -0.252 4.252 15 C -0.063 4.063 16 C -0.236 4.236 17 C 0.271 3.729 18 F -0.186 7.186 19 F -0.162 7.162 20 H 0.069 0.931 21 H 0.046 0.954 22 H 0.066 0.934 23 H 0.138 0.862 24 H 0.220 0.780 25 H 0.224 0.776 26 H 0.132 0.868 27 H 0.135 0.865 28 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.929 -11.033 0.438 13.036 hybrid contribution 0.529 0.833 -0.398 1.064 sum 7.457 -10.200 0.040 12.635 Atomic orbital electron populations 1.69974 1.05961 1.26389 1.51287 1.24927 0.94794 0.99008 0.95506 0.86512 0.80201 0.83798 0.77391 1.19728 1.21229 1.21022 1.20915 0.92846 0.89296 1.49800 0.92477 1.18667 0.92884 0.89566 0.99528 1.20324 0.92147 0.92212 0.90414 1.20528 1.03878 0.99510 0.98826 1.17882 0.92221 0.91415 0.86192 1.42445 1.53453 1.40228 1.05955 1.20230 1.08050 1.05628 0.91278 1.20504 0.94758 0.93734 0.97327 1.20040 1.06182 1.02335 0.95000 1.19976 0.77062 0.79918 0.95910 1.92940 1.33332 1.95939 1.96352 1.93115 1.91292 1.34350 1.97461 0.93126 0.95382 0.93411 0.86157 0.78007 0.77592 0.86832 0.86494 0.88952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.41 13.29 55.43 0.74 -26.67 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 15 3 Si 0.89 22.48 29.54 -169.99 -5.02 17.46 15 4 H -0.27 -6.77 7.11 56.52 0.40 -6.37 15 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 15 6 H -0.28 -7.11 7.11 56.52 0.40 -6.71 15 7 C -0.49 -14.12 7.19 -34.44 -0.25 -14.37 15 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 15 9 C 0.03 0.81 4.46 -29.04 -0.13 0.68 15 10 C 0.05 1.12 5.04 -104.66 -0.53 0.60 15 11 C -0.20 -4.02 9.53 -39.38 -0.38 -4.40 15 12 C 0.23 3.67 6.75 -83.78 -0.57 3.11 15 13 N -0.88 -10.48 9.09 32.41 0.29 -10.18 15 14 C -0.23 -3.49 9.90 -39.38 -0.39 -3.88 15 15 C -0.04 -0.71 9.66 -39.61 -0.38 -1.10 15 16 C -0.23 -4.64 5.37 -104.59 -0.56 -5.20 15 17 C 0.33 6.39 4.97 36.01 0.18 6.57 15 18 F -0.20 -4.44 15.32 2.25 0.03 -4.41 15 19 F -0.18 -4.25 14.93 2.25 0.03 -4.21 15 20 H 0.26 7.48 8.31 -40.82 -0.34 7.14 15 21 H 0.03 0.78 8.05 -51.92 -0.42 0.36 15 22 H 0.05 1.37 5.72 -51.93 -0.30 1.07 15 23 H 0.12 2.30 8.06 -52.49 -0.42 1.88 15 24 H 0.39 3.61 8.84 -40.82 -0.36 3.25 15 25 H 0.40 4.18 8.84 -40.82 -0.36 3.81 15 26 H 0.11 1.38 8.06 -52.49 -0.42 0.96 15 27 H 0.12 1.46 7.94 -52.49 -0.42 1.05 15 28 H 0.09 1.35 7.87 -51.93 -0.41 0.94 15 LS Contribution 251.25 15.07 3.79 3.79 Total: -1.00 -32.75 251.25 -5.88 -38.63 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -2.65 Total: 1.98 kcal Atomic # 6 Polarization: -13.29 SS G_CDS: -3.10 Total: -16.39 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: 1.03 Total: -36.85 kcal Atomic # 9 Polarization: -8.69 SS G_CDS: 0.07 Total: -8.62 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -32.75 -5.88 -38.63 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307022450.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.915 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds