Wall clock time and date at job start Mon Mar 30 2020 02:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86805 * 120.00370 * 2 1 4 4 H 1.48501 * 109.47502 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46863 * 300.00087 * 3 2 1 6 6 H 1.48498 * 109.46846 * 59.99407 * 3 2 1 7 7 C 1.37884 * 120.00053 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00036 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99797 * 0.02562 * 7 2 1 10 10 C 1.50695 * 109.47060 * 179.97438 * 9 7 2 11 11 C 1.38129 * 119.96008 * 265.25014 * 10 9 7 12 12 C 1.38888 * 119.91950 * 180.29338 * 11 10 9 13 13 N 1.39675 * 120.07517 * 179.70832 * 12 11 10 14 14 C 1.38939 * 119.85344 * 359.73004 * 12 11 10 15 15 C 1.38081 * 119.92438 * 359.97438 * 14 12 11 16 16 C 1.38262 * 119.96364 * 85.00065 * 10 9 7 17 17 C 1.50703 * 119.92356 * 359.97438 * 16 10 9 18 18 F 1.39904 * 109.46969 * 59.72548 * 17 16 10 19 19 F 1.39901 * 109.47086 * 299.72951 * 17 16 10 20 20 H 0.97009 * 119.99924 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.46988 * 59.99564 * 9 7 2 22 22 H 1.08999 * 109.46923 * 300.00099 * 9 7 2 23 23 H 1.07996 * 120.04264 * 0.02562 * 11 10 9 24 24 H 0.97000 * 120.00325 * 180.02562 * 13 12 11 25 25 H 0.96997 * 120.00006 * 0.02562 * 13 12 11 26 26 H 1.08001 * 120.03572 * 179.97438 * 14 12 11 27 27 H 1.07998 * 119.96422 * 179.97438 * 15 14 12 28 28 H 1.09002 * 109.47152 * 179.72619 * 17 16 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6446 0.0005 11 6 2.6032 -4.2333 -1.1921 12 6 3.5011 -5.2929 -1.1906 13 7 3.8757 -5.8946 -2.3941 14 6 4.0254 -5.7534 0.0108 15 6 3.6530 -5.1563 1.1988 16 6 2.7583 -4.1017 1.1938 17 6 2.3538 -3.4528 2.4924 18 9 0.9700 -3.5706 2.6614 19 9 2.7068 -2.0993 2.4673 20 1 -0.4850 0.8401 -0.0004 21 1 0.6246 -2.5571 -0.8897 22 1 0.6240 -2.5567 0.8903 23 1 2.1937 -3.8730 -2.1242 24 1 4.5026 -6.6348 -2.3919 25 1 3.5090 -5.5722 -3.2323 26 1 4.7236 -6.5774 0.0154 27 1 4.0599 -5.5140 2.1331 28 1 2.8642 -3.9462 3.3196 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307022450.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:00 Heat of formation + Delta-G solvation = -107.755284 kcal Electronic energy + Delta-G solvation = -15692.656106 eV Core-core repulsion = 12763.660575 eV Total energy + Delta-G solvation = -2928.995531 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.082 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.57969 -47.54464 -40.29520 -36.14474 -34.96481 -32.85586 -30.72607 -29.12148 -26.04589 -25.03960 -23.04296 -21.53402 -18.49430 -18.42302 -17.97115 -17.76710 -17.33749 -17.13813 -16.39869 -15.18401 -14.87207 -14.76280 -14.32733 -14.21886 -14.05399 -13.92651 -13.68736 -13.26994 -12.89734 -12.78514 -12.56049 -12.27015 -11.71383 -11.51028 -11.22268 -11.18411 -10.53824 -9.52716 -8.43028 -8.14115 -6.22468 0.59109 0.66835 1.37349 1.39404 1.52214 2.43074 2.95951 3.03545 3.17801 3.27479 3.59860 3.96909 4.21393 4.25124 4.46904 4.55922 4.83268 4.88698 5.19589 5.28901 5.39712 5.45816 5.55342 5.80212 5.94033 6.10569 6.22172 6.62446 6.85870 7.07553 7.42263 8.96730 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.026438 B = 0.010241 C = 0.008530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.837822 B = 2733.530308 C = 3281.731515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.495 4.495 8 H 0.050 0.950 9 C 0.041 3.959 10 C 0.011 3.989 11 C -0.229 4.229 12 C 0.236 3.764 13 N -0.863 5.863 14 C -0.219 4.219 15 C -0.031 4.031 16 C -0.257 4.257 17 C 0.309 3.691 18 F -0.224 7.224 19 F -0.211 7.211 20 H 0.262 0.738 21 H -0.005 1.005 22 H 0.018 0.982 23 H 0.108 0.892 24 H 0.411 0.589 25 H 0.404 0.596 26 H 0.159 0.841 27 H 0.164 0.836 28 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.905 -12.997 0.637 16.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.205 1.205 7 C -0.533 4.533 8 H 0.068 0.932 9 C 0.004 3.996 10 C 0.010 3.990 11 C -0.252 4.252 12 C 0.130 3.870 13 N -0.402 5.402 14 C -0.241 4.241 15 C -0.049 4.049 16 C -0.260 4.260 17 C 0.256 3.744 18 F -0.206 7.206 19 F -0.192 7.192 20 H 0.071 0.929 21 H 0.013 0.987 22 H 0.037 0.963 23 H 0.126 0.874 24 H 0.242 0.758 25 H 0.232 0.768 26 H 0.176 0.824 27 H 0.182 0.818 28 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.742 -12.855 0.652 16.143 hybrid contribution -0.295 1.233 -0.539 1.378 sum 9.447 -11.622 0.113 14.978 Atomic orbital electron populations 1.70103 1.07606 1.27419 1.52518 1.25834 0.95677 1.02852 0.95207 0.85471 0.79047 0.79249 0.77765 1.18958 1.20085 1.20516 1.21132 0.92506 0.90641 1.49016 0.93217 1.18330 0.93314 0.91522 0.96386 1.20023 0.93389 0.92490 0.93059 1.20455 1.05824 1.01452 0.97486 1.17909 0.90770 0.90072 0.88288 1.42402 1.52909 1.39935 1.04976 1.20767 1.07403 1.05812 0.90152 1.20967 0.92588 0.91553 0.99814 1.20186 1.07835 1.04164 0.93806 1.20782 0.76433 0.78802 0.98380 1.92891 1.35296 1.95896 1.96511 1.93038 1.91444 1.37009 1.97714 0.92931 0.98680 0.96342 0.87380 0.75814 0.76757 0.82390 0.81841 0.82815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.58 13.29 21.45 0.28 -59.30 15 2 C 0.00 0.07 5.46 84.66 0.46 0.53 15 3 Si 0.96 47.11 29.54 68.60 2.03 49.13 15 4 H -0.27 -12.58 7.11 99.48 0.71 -11.88 15 5 H -0.28 -12.94 7.11 99.48 0.71 -12.23 15 6 H -0.28 -13.42 7.11 99.48 0.71 -12.71 15 7 C -0.49 -29.71 7.19 25.60 0.18 -29.53 15 8 H 0.05 2.98 7.74 -2.91 -0.02 2.96 15 9 C 0.04 2.36 4.46 29.10 0.13 2.49 15 10 C 0.01 0.52 5.04 -19.89 -0.10 0.42 15 11 C -0.23 -9.09 9.53 22.40 0.21 -8.88 15 12 C 0.24 7.00 6.75 38.22 0.26 7.26 15 13 N -0.86 -17.49 9.09 -51.37 -0.47 -17.95 15 14 C -0.22 -5.60 9.90 22.40 0.22 -5.38 15 15 C -0.03 -0.86 9.66 22.25 0.21 -0.65 15 16 C -0.26 -9.99 5.37 -19.84 -0.11 -10.09 15 17 C 0.31 11.96 4.97 71.24 0.35 12.32 15 18 F -0.22 -10.05 15.32 44.97 0.69 -9.36 15 19 F -0.21 -10.06 14.93 44.97 0.67 -9.38 15 20 H 0.26 15.63 8.31 -92.70 -0.77 14.86 15 21 H -0.01 -0.31 8.05 -2.38 -0.02 -0.33 15 22 H 0.02 1.14 5.72 -2.39 -0.01 1.12 15 23 H 0.11 4.35 8.06 -2.91 -0.02 4.33 15 24 H 0.41 5.60 8.84 -92.71 -0.82 4.78 15 25 H 0.40 7.47 8.84 -92.71 -0.82 6.65 15 26 H 0.16 2.70 8.06 -2.91 -0.02 2.68 15 27 H 0.16 3.03 7.94 -2.91 -0.02 3.00 15 28 H 0.15 3.97 7.87 -2.39 -0.02 3.95 15 Total: -1.00 -75.80 251.25 4.60 -71.19 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -0.43 Total: 7.18 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 1.83 Total: -31.51 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -0.18 Total: -77.25 kcal Atomic # 9 Polarization: -20.10 SS G_CDS: 1.36 Total: -18.74 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.13 kcal Total: -75.80 4.60 -71.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307022450.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.561 kcal (2) G-P(sol) polarization free energy of solvation -75.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds