Wall clock time and date at job start Mon Mar 30 2020 03:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30669 * 1 3 3 Si 1.86803 * 120.00066 * 2 1 4 4 H 1.48500 * 109.46855 * 264.71279 * 3 2 1 5 5 H 1.48505 * 109.46909 * 24.71382 * 3 2 1 6 6 H 1.48500 * 109.47035 * 144.71360 * 3 2 1 7 7 C 1.40048 * 119.99681 * 179.72058 * 2 1 3 8 8 H 1.08004 * 119.99957 * 187.12609 * 7 2 1 9 9 C 1.46376 * 120.00484 * 7.12799 * 7 2 1 10 10 O 1.21691 * 119.99310 * 7.61122 * 9 7 2 11 11 N 1.34772 * 120.00212 * 187.61105 * 9 7 2 12 12 C 1.48110 * 122.64019 * 359.70971 * 11 9 7 13 13 C 1.54943 * 106.31974 * 238.85315 * 12 11 9 14 14 O 1.42904 * 108.92794 * 304.17539 * 13 12 11 15 15 C 1.42913 * 114.78456 * 61.25263 * 14 13 12 16 16 C 1.48104 * 122.63768 * 179.97438 * 11 9 7 17 17 C 1.53676 * 106.97598 * 237.88854 * 16 11 9 18 18 O 1.43429 * 109.03781 * 304.82974 * 17 16 11 19 19 C 1.42901 * 114.92433 * 60.62581 * 18 17 16 20 20 H 0.96998 * 120.00263 * 0.02562 * 1 2 3 21 21 H 1.09001 * 111.23145 * 359.51898 * 12 11 9 22 22 H 1.08999 * 109.36146 * 184.49908 * 13 12 11 23 23 H 1.08992 * 109.93141 * 64.19998 * 13 12 11 24 24 H 1.08996 * 109.54112 * 179.16261 * 15 14 13 25 25 H 1.08997 * 109.60347 * 58.95530 * 15 14 13 26 26 H 1.08997 * 111.24067 * 359.52041 * 16 11 9 27 27 H 1.09001 * 109.52722 * 64.59245 * 17 16 11 28 28 H 1.08996 * 109.52858 * 184.81761 * 17 16 11 29 29 H 1.09000 * 109.53511 * 179.43061 * 19 18 17 30 30 H 1.09005 * 109.59958 * 59.24104 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.5999 1.9819 -1.3941 5 1 1.3867 2.6824 0.5854 6 1 3.4779 1.4750 0.8088 7 6 2.0069 -1.2129 0.0059 8 1 3.0806 -1.2160 0.1220 9 6 1.2835 -2.4764 -0.1452 10 8 0.0967 -2.4695 -0.4140 11 7 1.9319 -3.6472 0.0133 12 6 3.3757 -3.7238 0.3344 13 6 4.0348 -4.5299 -0.8130 14 8 3.3792 -5.7945 -0.9270 15 6 1.9874 -5.7215 -1.2432 16 6 1.2579 -4.9587 -0.1256 17 6 1.4534 -5.7065 1.2026 18 8 2.8551 -5.7761 1.4984 19 6 3.5026 -4.5110 1.6475 20 1 -0.4850 0.8400 -0.0004 21 1 3.8163 -2.7297 0.4109 22 1 5.0895 -4.6853 -0.5859 23 1 3.9406 -3.9846 -1.7520 24 1 1.5785 -6.7287 -1.3238 25 1 1.8544 -5.1972 -2.1894 26 1 0.1999 -4.8364 -0.3573 27 1 0.9397 -5.1712 2.0011 28 1 1.0461 -6.7139 1.1169 29 1 4.5564 -4.6659 1.8793 30 1 3.0303 -3.9514 2.4549 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307191747.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:44 Heat of formation + Delta-G solvation = -109.805459 kcal Electronic energy + Delta-G solvation = -16908.793748 eV Core-core repulsion = 14090.796830 eV Total energy + Delta-G solvation = -2817.996918 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.05177 -36.62643 -36.27645 -33.15285 -32.76253 -32.13318 -27.76383 -26.53167 -26.02583 -24.26860 -22.38820 -20.83665 -18.31790 -16.98496 -16.11203 -15.80179 -15.40490 -14.98283 -14.93906 -14.67803 -14.16509 -13.84800 -13.68337 -12.68366 -12.49898 -11.85575 -11.65020 -11.47170 -11.24850 -10.98338 -10.87793 -10.72979 -10.37140 -10.14346 -10.05850 -9.48375 -9.13436 -8.90078 -7.71126 -7.21602 -6.33515 -4.75523 3.07542 3.14192 3.16339 3.91675 4.11779 4.27686 4.43724 4.46696 5.18749 5.23487 5.42038 5.43823 5.55914 5.77601 5.85297 5.89097 6.02605 6.04234 6.04726 6.10054 6.12053 6.33940 6.35038 7.29188 7.33627 7.62611 7.66478 7.96732 8.22077 8.90874 9.29321 10.44643 10.62783 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.039254 B = 0.009576 C = 0.008963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.131367 B = 2923.370331 C = 3123.257896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.090 3.910 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.071 0.929 9 C 0.566 3.434 10 O -0.578 6.578 11 N -0.641 5.641 12 C 0.079 3.921 13 C 0.057 3.943 14 O -0.371 6.371 15 C 0.061 3.939 16 C 0.075 3.925 17 C 0.062 3.938 18 O -0.372 6.372 19 C 0.061 3.939 20 H 0.271 0.729 21 H 0.118 0.882 22 H 0.091 0.909 23 H 0.050 0.950 24 H 0.091 0.909 25 H 0.048 0.952 26 H 0.109 0.891 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.784 -6.753 1.023 9.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.089 0.911 9 C 0.373 3.627 10 O -0.460 6.460 11 N -0.382 5.382 12 C -0.026 4.026 13 C -0.021 4.021 14 O -0.289 6.289 15 C -0.017 4.017 16 C -0.030 4.030 17 C -0.016 4.016 18 O -0.290 6.290 19 C -0.017 4.017 20 H 0.081 0.919 21 H 0.135 0.865 22 H 0.109 0.891 23 H 0.069 0.931 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.127 0.873 27 H 0.067 0.933 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.099 -6.942 0.920 9.287 hybrid contribution 0.158 1.424 -0.071 1.434 sum 6.258 -5.518 0.849 8.386 Atomic orbital electron populations 1.69967 1.07180 1.27670 1.34805 1.25707 0.94606 1.00346 0.92397 0.86381 0.80062 0.81173 0.79140 1.19532 1.20429 1.18883 1.20861 0.94164 0.89216 1.53881 0.91078 1.18252 0.86347 0.81701 0.76444 1.90592 1.16109 1.85854 1.53475 1.48995 1.07791 1.04603 1.76762 1.23103 0.84639 1.00520 0.94355 1.23171 0.96033 0.85350 0.97554 1.87817 1.21417 1.28215 1.91411 1.22870 0.82325 1.00083 0.96387 1.22619 0.99556 0.85698 0.95169 1.22941 0.82741 1.00121 0.95812 1.87897 1.21606 1.28142 1.91360 1.22841 0.97416 0.85349 0.96136 0.91861 0.86459 0.89137 0.93132 0.89140 0.93397 0.87297 0.93274 0.89096 0.89050 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.56 11.92 55.55 0.66 -21.89 16 2 C 0.09 2.44 5.48 -17.37 -0.10 2.34 16 3 Si 0.91 19.61 29.56 -169.99 -5.03 14.58 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 6 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.54 -14.90 8.92 -35.63 -0.32 -15.22 16 8 H 0.07 1.76 5.87 -52.48 -0.31 1.45 16 9 C 0.57 15.86 7.67 -12.99 -0.10 15.76 16 10 O -0.58 -18.41 14.80 5.20 0.08 -18.34 16 11 N -0.64 -14.52 2.52 -155.50 -0.39 -14.92 16 12 C 0.08 1.48 3.63 -65.70 -0.24 1.24 16 13 C 0.06 0.95 6.51 38.18 0.25 1.20 16 14 O -0.37 -6.63 9.13 -57.43 -0.52 -7.16 16 15 C 0.06 1.06 6.44 37.53 0.24 1.31 16 16 C 0.07 1.47 3.68 -66.32 -0.24 1.23 16 17 C 0.06 1.08 6.47 37.51 0.24 1.32 16 18 O -0.37 -6.69 9.15 -57.43 -0.53 -7.22 16 19 C 0.06 1.02 6.47 37.48 0.24 1.27 16 20 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 21 H 0.12 2.19 5.73 -51.93 -0.30 1.89 16 22 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 24 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 26 H 0.11 2.31 7.31 -51.93 -0.38 1.93 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 246.02 15.07 3.71 3.71 Total: -1.00 -33.73 246.02 -5.54 -39.28 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -3.50 Total: 1.51 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -0.02 Total: 10.44 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.27 Total: -36.81 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -0.97 Total: -32.71 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -33.73 -5.54 -39.28 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307191747.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.530 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds