Wall clock time and date at job start Mon Mar 30 2020 03:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46849 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99798 * 2 1 3 5 5 C 1.50708 * 109.47120 * 174.99799 * 4 2 1 6 6 N 1.30250 * 121.05483 * 89.97248 * 5 4 2 7 7 S 1.69944 * 105.75885 * 180.02562 * 6 5 4 8 8 C 1.72309 * 94.56256 * 0.02562 * 7 6 5 9 9 N 1.38110 * 127.50484 * 179.97438 * 8 7 6 10 10 C 1.36908 * 119.99942 * 0.03182 * 9 8 7 11 11 H 1.08002 * 120.00481 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99569 * 179.71914 * 10 9 8 13 13 N 1.31564 * 120.00361 * 0.27496 * 12 10 9 14 14 Si 1.86803 * 119.99794 * 180.27663 * 12 10 9 15 15 H 1.48506 * 109.47253 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 120.00004 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00050 * 14 12 10 18 18 N 1.31113 * 121.05813 * 270.26289 * 5 4 2 19 19 H 1.09003 * 109.46665 * 299.99955 * 1 2 3 20 20 H 1.08999 * 109.47191 * 59.99904 * 1 2 3 21 21 H 1.09001 * 109.47029 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46989 * 240.00319 * 2 1 3 23 23 H 1.08997 * 109.47065 * 60.00365 * 3 2 1 24 24 H 1.08996 * 109.46969 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47302 * 300.00027 * 3 2 1 26 26 H 1.09003 * 109.47336 * 55.00465 * 4 2 1 27 27 H 1.08994 * 109.47407 * 294.99871 * 4 2 1 28 28 H 0.97000 * 119.99595 * 180.02562 * 9 8 7 29 29 H 0.96996 * 120.00423 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.8294 1.1888 6 7 4.3034 0.1015 1.6891 7 16 5.9002 -0.4092 1.4110 8 6 5.4412 -1.8712 0.6231 9 7 6.2733 -2.8406 0.0982 10 6 7.6320 -2.6919 0.1763 11 1 8.0533 -1.8164 0.6480 12 6 8.4681 -3.6689 -0.3460 13 7 7.9550 -4.7353 -0.9209 14 14 10.3220 -3.4697 -0.2326 15 1 10.6416 -2.1925 0.4544 16 1 10.8955 -4.6030 0.5368 17 1 10.9028 -3.4550 -1.5992 18 7 4.1238 -1.8608 0.6261 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6055 -1.7198 1.2952 27 1 1.7517 -0.1583 2.1369 28 1 5.8949 -3.6268 -0.3256 29 1 8.5394 -5.4179 -1.2862 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307257479.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:57 Heat of formation + Delta-G solvation = 23.634572 kcal Electronic energy + Delta-G solvation = -13258.303544 eV Core-core repulsion = 10921.138642 eV Total energy + Delta-G solvation = -2337.164902 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.94003 -36.34449 -35.23519 -32.39604 -29.86790 -27.80201 -26.84766 -25.40940 -22.33451 -20.23870 -19.41116 -18.11943 -16.84986 -16.09462 -14.85300 -14.69405 -14.53652 -14.02590 -13.69212 -13.26686 -12.24702 -12.06922 -11.91755 -11.82660 -11.64077 -11.18363 -11.03043 -10.88051 -10.62777 -10.49959 -10.36588 -10.26930 -10.08836 -9.33004 -8.34210 -8.27113 -7.33095 -7.06674 -4.27624 1.99562 2.50473 2.95052 2.96488 3.02926 3.23320 3.68986 3.87816 4.49319 4.66830 5.18782 5.22818 5.24526 5.67857 5.81744 5.86680 5.94760 6.08691 6.14628 6.27233 6.35001 6.63491 6.65919 6.79731 6.86216 7.19661 7.37845 8.18081 8.60930 8.77008 9.27090 10.06727 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.053293 B = 0.006257 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.273490 B = 4474.027436 C = 4767.870643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.144 4.144 4 C -0.022 4.022 5 C 0.314 3.686 6 N -0.561 5.561 7 S 0.080 5.920 8 C 0.276 3.724 9 N -0.453 5.453 10 C -0.305 4.305 11 H 0.114 0.886 12 C 0.037 3.963 13 N -0.858 5.858 14 Si 0.945 3.055 15 H -0.259 1.259 16 H -0.272 1.272 17 H -0.272 1.272 18 N -0.639 5.639 19 H 0.053 0.947 20 H 0.052 0.948 21 H 0.054 0.946 22 H 0.072 0.928 23 H 0.052 0.948 24 H 0.064 0.936 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.413 0.587 29 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.440 4.322 0.563 6.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 C -0.201 4.201 4 C -0.064 4.064 5 C 0.025 3.975 6 N -0.402 5.402 7 S 0.212 5.788 8 C -0.099 4.099 9 N -0.065 5.065 10 C -0.439 4.439 11 H 0.132 0.868 12 C -0.173 4.173 13 N -0.492 5.492 14 Si 0.769 3.231 15 H -0.183 1.183 16 H -0.198 1.198 17 H -0.198 1.198 18 N -0.384 5.384 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.073 0.927 22 H 0.091 0.909 23 H 0.071 0.929 24 H 0.083 0.917 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.251 0.749 29 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.725 5.071 0.974 6.999 hybrid contribution 0.217 -1.224 -0.629 1.393 sum -4.508 3.847 0.345 5.936 Atomic orbital electron populations 1.21814 0.95181 1.01554 1.01452 1.21012 0.95058 0.96625 0.98114 1.21830 1.02375 0.95316 1.00598 1.20121 0.86390 1.01366 0.98559 1.22544 0.97817 0.85792 0.91329 1.77378 0.96075 1.28659 1.38062 1.84246 1.16008 1.17168 1.61392 1.24469 0.89983 0.95576 0.99841 1.40237 1.04463 1.16457 1.45360 1.20056 0.78922 1.07808 1.37158 0.86820 1.25546 1.02535 0.94320 0.94894 1.69688 1.38065 1.08428 1.33030 0.85540 0.79191 0.79486 0.78859 1.18264 1.19766 1.19766 1.67071 1.05708 1.29547 1.36093 0.92783 0.92863 0.92696 0.90934 0.92891 0.91746 0.93625 0.90125 0.90393 0.74864 0.90300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 37.16 0.34 -1.30 15 2 C -0.09 -1.31 2.91 -90.62 -0.26 -1.58 15 3 C -0.14 -2.16 8.94 37.16 0.33 -1.83 15 4 C -0.02 -0.37 5.22 -27.88 -0.15 -0.51 15 5 C 0.31 6.79 6.13 -159.08 -0.98 5.82 15 6 N -0.56 -12.65 11.19 29.60 0.33 -12.32 15 7 S 0.08 1.85 22.57 -107.50 -2.43 -0.58 15 8 C 0.28 6.71 8.50 -86.46 -0.74 5.98 15 9 N -0.45 -11.11 5.41 -12.20 -0.07 -11.17 15 10 C -0.31 -7.39 9.74 -15.08 -0.15 -7.54 15 11 H 0.11 2.68 6.90 -52.49 -0.36 2.32 15 12 C 0.04 0.87 5.50 -17.46 -0.10 0.78 15 13 N -0.86 -20.82 13.05 55.49 0.72 -20.09 15 14 Si 0.95 17.96 29.55 -169.99 -5.02 12.94 15 15 H -0.26 -4.83 7.11 56.52 0.40 -4.43 15 16 H -0.27 -5.13 7.11 56.52 0.40 -4.73 15 17 H -0.27 -5.13 7.11 56.52 0.40 -4.72 15 18 N -0.64 -15.15 10.60 -14.53 -0.15 -15.31 15 19 H 0.05 0.57 8.14 -51.93 -0.42 0.15 15 20 H 0.05 0.56 8.14 -51.93 -0.42 0.13 15 21 H 0.05 0.60 8.14 -51.93 -0.42 0.17 15 22 H 0.07 1.20 8.14 -51.93 -0.42 0.77 15 23 H 0.05 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.06 1.16 6.70 -51.93 -0.35 0.81 15 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 15 26 H 0.08 1.29 8.14 -51.93 -0.42 0.86 15 27 H 0.08 1.22 8.14 -51.93 -0.42 0.79 15 28 H 0.41 10.24 8.01 -40.82 -0.33 9.91 15 29 H 0.29 6.42 8.31 -40.82 -0.34 6.08 15 LS Contribution 264.92 15.07 3.99 3.99 Total: -1.00 -26.24 264.92 -7.87 -34.11 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -3.55 Total: 8.63 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.69 Total: -0.19 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: 0.84 Total: -58.90 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.02 Total: 12.94 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.43 Total: -0.58 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -26.24 -7.87 -34.11 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307257479.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.742 kcal (2) G-P(sol) polarization free energy of solvation -26.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds