Wall clock time and date at job start Mon Mar 30 2020 03:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53003 * 109.46849 * 2 1 4 4 C 1.52996 * 109.47131 * 119.99798 * 2 1 3 5 5 C 1.50708 * 109.47120 * 174.99799 * 4 2 1 6 6 N 1.30250 * 121.05483 * 89.97248 * 5 4 2 7 7 S 1.69944 * 105.75885 * 180.02562 * 6 5 4 8 8 C 1.72309 * 94.56256 * 0.02562 * 7 6 5 9 9 N 1.38110 * 127.50484 * 179.97438 * 8 7 6 10 10 C 1.36908 * 119.99942 * 0.03182 * 9 8 7 11 11 H 1.08002 * 120.00481 * 359.97438 * 10 9 8 12 12 C 1.38795 * 119.99569 * 179.71914 * 10 9 8 13 13 N 1.31564 * 120.00361 * 0.27496 * 12 10 9 14 14 Si 1.86803 * 119.99794 * 180.27663 * 12 10 9 15 15 H 1.48506 * 109.47253 * 359.97438 * 14 12 10 16 16 H 1.48494 * 109.47141 * 120.00004 * 14 12 10 17 17 H 1.48498 * 109.47018 * 240.00050 * 14 12 10 18 18 N 1.31113 * 121.05813 * 270.26289 * 5 4 2 19 19 H 1.09003 * 109.46665 * 299.99955 * 1 2 3 20 20 H 1.08999 * 109.47191 * 59.99904 * 1 2 3 21 21 H 1.09001 * 109.47029 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.46989 * 240.00319 * 2 1 3 23 23 H 1.08997 * 109.47065 * 60.00365 * 3 2 1 24 24 H 1.08996 * 109.46969 * 180.02562 * 3 2 1 25 25 H 1.08999 * 109.47302 * 300.00027 * 3 2 1 26 26 H 1.09003 * 109.47336 * 55.00465 * 4 2 1 27 27 H 1.08994 * 109.47407 * 294.99871 * 4 2 1 28 28 H 0.97000 * 119.99595 * 180.02562 * 9 8 7 29 29 H 0.96996 * 120.00423 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5420 -0.8294 1.1888 6 7 4.3034 0.1015 1.6891 7 16 5.9002 -0.4092 1.4110 8 6 5.4412 -1.8712 0.6231 9 7 6.2733 -2.8406 0.0982 10 6 7.6320 -2.6919 0.1763 11 1 8.0533 -1.8164 0.6480 12 6 8.4681 -3.6689 -0.3460 13 7 7.9550 -4.7353 -0.9209 14 14 10.3220 -3.4697 -0.2326 15 1 10.6416 -2.1925 0.4544 16 1 10.8955 -4.6030 0.5368 17 1 10.9028 -3.4550 -1.5992 18 7 4.1238 -1.8608 0.6261 19 1 -0.3633 0.5139 0.8900 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 1.8933 -0.5138 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9564 -0.8900 26 1 1.6055 -1.7198 1.2952 27 1 1.7517 -0.1583 2.1369 28 1 5.8949 -3.6268 -0.3256 29 1 8.5394 -5.4179 -1.2862 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307257479.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:57 Heat of formation + Delta-G solvation = 8.987863 kcal Electronic energy + Delta-G solvation = -13258.938673 eV Core-core repulsion = 10921.138642 eV Total energy + Delta-G solvation = -2337.800031 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.66890 -38.04780 -36.63713 -34.19983 -31.64842 -29.22201 -27.91099 -27.22433 -24.07634 -21.69522 -21.04777 -19.78971 -18.66234 -17.89268 -16.54433 -16.17552 -16.09572 -15.58436 -15.07130 -14.69518 -13.77396 -13.44574 -13.40739 -13.16853 -12.97602 -12.79782 -12.55830 -12.29462 -12.10656 -12.07262 -11.71301 -11.65063 -11.53152 -11.08488 -10.16891 -10.11275 -9.16221 -8.85355 -6.15129 0.18039 0.65014 1.39214 1.45425 1.47589 1.57937 2.09259 2.14178 2.72942 2.86349 3.74502 4.00150 4.08291 4.31661 4.61280 4.73797 4.83729 4.91458 4.99079 5.05735 5.09384 5.12634 5.28833 5.40975 5.50188 5.51631 5.66116 6.34075 6.76969 6.90675 7.44928 8.29787 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.053293 B = 0.006257 C = 0.005871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.273490 B = 4474.027436 C = 4767.870643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.022 4.022 5 C 0.310 3.690 6 N -0.568 5.568 7 S 0.079 5.921 8 C 0.260 3.740 9 N -0.459 5.459 10 C -0.329 4.329 11 H 0.116 0.884 12 C 0.003 3.997 13 N -0.886 5.886 14 Si 1.012 2.988 15 H -0.254 1.254 16 H -0.266 1.266 17 H -0.266 1.266 18 N -0.656 5.656 19 H 0.068 0.932 20 H 0.066 0.934 21 H 0.061 0.939 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.028 0.972 25 H 0.063 0.937 26 H 0.090 0.910 27 H 0.094 0.906 28 H 0.408 0.592 29 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 4.818 0.704 7.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.104 4.104 3 C -0.197 4.197 4 C -0.064 4.064 5 C 0.022 3.978 6 N -0.408 5.408 7 S 0.211 5.789 8 C -0.115 4.115 9 N -0.071 5.071 10 C -0.463 4.463 11 H 0.133 0.867 12 C -0.205 4.205 13 N -0.521 5.521 14 Si 0.832 3.168 15 H -0.177 1.177 16 H -0.191 1.191 17 H -0.191 1.191 18 N -0.402 5.402 19 H 0.087 0.913 20 H 0.085 0.915 21 H 0.080 0.920 22 H 0.069 0.931 23 H 0.082 0.918 24 H 0.047 0.953 25 H 0.082 0.918 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.245 0.755 29 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.139 5.580 1.122 7.669 hybrid contribution 0.269 -1.374 -0.679 1.556 sum -4.870 4.206 0.443 6.450 Atomic orbital electron populations 1.21749 0.92003 1.02553 1.02863 1.20995 0.97563 0.95842 0.96048 1.21787 0.99972 0.95848 1.02092 1.20367 0.83157 1.02593 1.00303 1.23335 0.99834 0.84743 0.89884 1.77415 0.95737 1.29017 1.38621 1.84127 1.16819 1.16642 1.61357 1.24751 0.90525 0.96013 1.00197 1.40312 1.04790 1.16372 1.45593 1.20353 0.78980 1.08605 1.38323 0.86662 1.26497 1.06713 0.93510 0.93752 1.69752 1.39880 1.09111 1.33310 0.84583 0.73482 0.79682 0.79074 1.17702 1.19100 1.19107 1.67160 1.05609 1.30585 1.36825 0.91327 0.91513 0.91962 0.93060 0.91780 0.95316 0.91780 0.89183 0.88782 0.75532 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 9.19 71.98 0.66 -2.02 15 2 C -0.08 -2.38 2.91 -10.79 -0.03 -2.41 15 3 C -0.14 -3.98 8.94 71.98 0.64 -3.34 15 4 C -0.02 -0.70 5.22 29.85 0.16 -0.55 15 5 C 0.31 13.33 6.13 139.41 0.86 14.18 15 6 N -0.57 -25.48 11.19 -60.28 -0.67 -26.16 15 7 S 0.08 3.67 22.57 -56.49 -1.28 2.39 15 8 C 0.26 12.81 8.50 178.89 1.52 14.33 15 9 N -0.46 -22.95 5.41 -192.52 -1.04 -23.99 15 10 C -0.33 -16.06 9.74 84.03 0.82 -15.24 15 11 H 0.12 5.47 6.90 -2.91 -0.02 5.45 15 12 C 0.00 0.13 5.50 84.87 0.47 0.60 15 13 N -0.89 -42.96 13.05 21.64 0.28 -42.67 15 14 Si 1.01 35.89 29.55 68.60 2.03 37.92 15 15 H -0.25 -8.71 7.11 99.48 0.71 -8.01 15 16 H -0.27 -9.15 7.11 99.48 0.71 -8.44 15 17 H -0.27 -9.15 7.11 99.48 0.71 -8.45 15 18 N -0.66 -31.36 10.60 -199.90 -2.12 -33.48 15 19 H 0.07 1.19 8.14 -2.39 -0.02 1.17 15 20 H 0.07 1.18 8.14 -2.39 -0.02 1.16 15 21 H 0.06 1.17 8.14 -2.39 -0.02 1.15 15 22 H 0.05 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.06 1.66 8.14 -2.39 -0.02 1.64 15 24 H 0.03 1.01 6.70 -2.39 -0.02 0.99 15 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 15 26 H 0.09 2.73 8.14 -2.39 -0.02 2.71 15 27 H 0.09 2.72 8.14 -2.39 -0.02 2.70 15 28 H 0.41 20.76 8.01 -92.71 -0.74 20.02 15 29 H 0.29 13.03 8.31 -92.71 -0.77 12.26 15 Total: -1.00 -55.60 264.92 2.71 -52.89 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.42 Total: 27.53 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 5.09 Total: 5.56 kcal Atomic # 7 Polarization: -122.74 SS G_CDS: -3.55 Total: -126.30 kcal Atomic # 14 Polarization: 35.89 SS G_CDS: 2.03 Total: 37.92 kcal Atomic # 16 Polarization: 3.67 SS G_CDS: -1.28 Total: 2.39 kcal Total: -55.60 2.71 -52.89 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307257479.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.881 kcal (2) G-P(sol) polarization free energy of solvation -55.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds